Literature DB >> 23061027

Quantitative Glycomics of Cultured Cells Using Isotopic Detection of Aminosugars with Glutamine (IDAWG).

Meng Fang1, Jae-Min Lim, Lance Wells.   

Abstract

IDAWG (Isotopic Detection of Aminosugars With Glutamine) is a newly reported, in vivo, stable isotopic labeling strategy for quantitative glycomics of cultured cells. Detailed procedures are provided for glycan analysis using IDAWG including labeling, release of both N- and O-linked glycans, permethylation, and mass spectrometry analysis. The methods for data processing and calculations are also introduced here but have not yet been automated.

Entities:  

Year:  2010        PMID: 23061027      PMCID: PMC3467102          DOI: 10.1002/9780470559277.ch090207

Source DB:  PubMed          Journal:  Curr Protoc Chem Biol        ISSN: 2160-4762


  17 in total

1.  Informatics platform for global proteomic profiling and biomarker discovery using liquid chromatography-tandem mass spectrometry.

Authors:  Dragan Radulovic; Salomeh Jelveh; Soyoung Ryu; T Guy Hamilton; Eric Foss; Yongyi Mao; Andrew Emili
Journal:  Mol Cell Proteomics       Date:  2004-07-21       Impact factor: 5.911

Review 2.  A genetic approach to Mammalian glycan function.

Authors:  John B Lowe; Jamey D Marth
Journal:  Annu Rev Biochem       Date:  2003-03-27       Impact factor: 23.643

3.  Tools for glycomics: relative quantitation of glycans by isotopic permethylation using 13CH3I.

Authors:  Gerardo Alvarez-Manilla; Nicole Lynn Warren; Trina Abney; James Atwood; Parastoo Azadi; Will S York; Michael Pierce; Ron Orlando
Journal:  Glycobiology       Date:  2007-03-23       Impact factor: 4.313

4.  IDAWG: Metabolic incorporation of stable isotope labels for quantitative glycomics of cultured cells.

Authors:  Ron Orlando; Jae-Min Lim; James A Atwood; Peggi M Angel; Meng Fang; Kazuhiro Aoki; Gerardo Alvarez-Manilla; Kelley W Moremen; William S York; Michael Tiemeyer; Michael Pierce; Stephen Dalton; Lance Wells
Journal:  J Proteome Res       Date:  2009-08       Impact factor: 4.466

Review 5.  Analysis of N- and O-linked glycans from glycoproteins using MALDI-TOF mass spectrometry.

Authors:  Willy Morelle; Valegh Faid; Frédéric Chirat; Jean-Claude Michalski
Journal:  Methods Mol Biol       Date:  2009

6.  The prevalence and nature of glycan alterations on specific proteins in pancreatic cancer patients revealed using antibody-lectin sandwich arrays.

Authors:  Tingting Yue; Irwin J Goldstein; Michael A Hollingsworth; Karen Kaul; Randall E Brand; Brian B Haab
Journal:  Mol Cell Proteomics       Date:  2009-04-17       Impact factor: 5.911

7.  GlycoWorkbench: a tool for the computer-assisted annotation of mass spectra of glycans.

Authors:  Alessio Ceroni; Kai Maass; Hildegard Geyer; Rudolf Geyer; Anne Dell; Stuart M Haslam
Journal:  J Proteome Res       Date:  2008-03-01       Impact factor: 4.466

8.  Quantitation by isobaric labeling: applications to glycomics.

Authors:  James A Atwood; Lei Cheng; Gerardo Alvarez-Manilla; Nicole L Warren; William S York; Ron Orlando
Journal:  J Proteome Res       Date:  2007-11-30       Impact factor: 4.466

9.  Comparative glycomic mapping through quantitative permethylation and stable-isotope labeling.

Authors:  Pilsoo Kang; Yehia Mechref; Zuzana Kyselova; John A Goetz; Milos V Novotny
Journal:  Anal Chem       Date:  2007-07-14       Impact factor: 6.986

Review 10.  An introduction to bioinformatics for glycomics research.

Authors:  Kiyoko F Aoki-Kinoshita
Journal:  PLoS Comput Biol       Date:  2008-05-30       Impact factor: 4.475

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  4 in total

Review 1.  The challenge and promise of glycomics.

Authors:  Richard D Cummings; J Michael Pierce
Journal:  Chem Biol       Date:  2014-01-16

2.  A Rapid Array-Based Approach to N-Glycan Profiling of Cultured Cells.

Authors:  Peggi M Angel; Janet Saunders; Cassandra L Clift; Shai White-Gilbertson; Christina Voelkel-Johnson; Elizabeth Yeh; Anand Mehta; Richard R Drake
Journal:  J Proteome Res       Date:  2019-09-19       Impact factor: 4.466

3.  Array-Based N-Glycan Profiling of Cells in Culture.

Authors:  Peggi M Angel; Anand S Mehta; Richard R Drake
Journal:  Methods Mol Biol       Date:  2021

4.  Discovery of specific metastasis-related N-glycan alterations in epithelial ovarian cancer based on quantitative glycomics.

Authors:  Xingwang Zhang; Yisheng Wang; Yifan Qian; Xin Wu; Zejian Zhang; Xijun Liu; Ran Zhao; Lei Zhou; Yuanyuan Ruan; Jiejie Xu; Haiou Liu; Shifang Ren; Congjian Xu; Jianxin Gu
Journal:  PLoS One       Date:  2014-02-06       Impact factor: 3.240

  4 in total

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