Literature DB >> 23059551

Quantitation of HIV-1 DNA with a sensitive TaqMan assay that has broad subtype specificity.

Renée M van der Sluis1, Thijs van Montfort, Mireille Centlivre, Nick C T Schopman, Marion Cornelissen, Rogier W Sanders, Ben Berkhout, Rienk E Jeeninga, William A Paxton, Georgios Pollakis.   

Abstract

The increasing diversity of HIV-1 isolates makes virus quantitation challenging, especially when diverse isolates co-circulate in a geographical area. Measuring the HIV-1 DNA levels in cells has become a valuable practical tool for fundamental and clinical research. A quantitative HIV-1 DNA assay was developed based on TaqMan(®) technology. Primers that target the highly conserved LTR region were designed to detect a broad array of HIV-1 variants, including viral isolates from many subtypes, with high sensitivity. Introduction of a pre-amplification step prior to the TaqMan(®) reaction allowed the specific amplification of fully reverse transcribed viral DNA. Execution of the pre-amplification step with a second primer set enables for the exclusive quantitation of the 2-LTR circular HIV-1 DNA form.
Copyright © 2012 Elsevier B.V. All rights reserved.

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Year:  2012        PMID: 23059551     DOI: 10.1016/j.jviromet.2012.09.019

Source DB:  PubMed          Journal:  J Virol Methods        ISSN: 0166-0934            Impact factor:   2.014


  7 in total

1.  The Use of Ultra-Sensitive Molecular Assays in HIV Cure-Related Research.

Authors:  Catherine Kibirige
Journal:  J AIDS Clin Res       Date:  2013-05-27

2.  In-depth validation of total HIV-1 DNA assays for quantification of various HIV-1 subtypes.

Authors:  Sofie Rutsaert; Ward De Spiegelaere; Clarissa Van Hecke; Marie-Angélique De Scheerder; Maja Kiselinova; Karen Vervisch; Wim Trypsteen; Linos Vandekerckhove
Journal:  Sci Rep       Date:  2018-11-22       Impact factor: 4.379

Review 3.  Measuring the Success of HIV-1 Cure Strategies.

Authors:  Jordan Thomas; Alessandra Ruggiero; William A Paxton; Georgios Pollakis
Journal:  Front Cell Infect Microbiol       Date:  2020-04-07       Impact factor: 5.293

4.  Development of a sensitive, quantitative assay with broad subtype specificity for detection of total HIV-1 nucleic acids in plasma and PBMC.

Authors:  C N Kibirige; M Manak; D King; B Abel; H Hack; D Wooding; Y Liu; N Fernandez; J Dalel; Steve Kaye; N Imami; L Jagodzinski; J Gilmour
Journal:  Sci Rep       Date:  2022-01-28       Impact factor: 4.996

Review 5.  Cell-associated HIV RNA: a dynamic biomarker of viral persistence.

Authors:  Alexander O Pasternak; Vladimir V Lukashov; Ben Berkhout
Journal:  Retrovirology       Date:  2013-04-15       Impact factor: 4.602

6.  Dendritic cell-induced activation of latent HIV-1 provirus in actively proliferating primary T lymphocytes.

Authors:  Renée M van der Sluis; Thijs van Montfort; Georgios Pollakis; Rogier W Sanders; Dave Speijer; Ben Berkhout; Rienk E Jeeninga
Journal:  PLoS Pathog       Date:  2013-03-21       Impact factor: 6.823

7.  Measuring Proviral HIV-1 DNA: Hurdles and Improvements to an Assay Monitoring Integration Events Utilising Human Alu Repeat Sequences.

Authors:  Eva Malatinkova; Jordan Thomas; Ward De Spiegelaere; Sofie Rutsaert; Anna Maria Geretti; Georgios Pollakis; William A Paxton; Linos Vandekerckhove; Alessandra Ruggiero
Journal:  Life (Basel)       Date:  2021-12-16
  7 in total

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