Literature DB >> 23052212

A SAXS-based ensemble model of the native and phosphorylated regulatory domain of the CFTR.

Carlotta Marasini1, Lauretta Galeno, Oscar Moran.   

Abstract

The cystic fibrosis transmembrane conductance regulator (CFTR), the defective protein in cystic fibrosis, is an anion channel activated by protein kinase A phosphorylation. The regulatory domain (RD) of CFTR has multiple phosphorylation sites, and is responsible for channel activation. This domain is intrinsically disordered, rendering the structural analysis a difficult task, as high-resolution techniques are barely applicable. In this work, we obtained a biophysical characterization of the native and phosphorylated RD in solution by employing complementary structural methods. The native RD has a gyration radius of 3.25 nm, and a maximum molecular dimension of 11.4 nm, larger than expected for a globular protein of the same molecular mass. Phosphorylation causes compaction of the structure, yielding a significant reduction of the gyration radius, to 2.92 nm, and on the maximum molecular dimension to 10.2 nm. Using an ensemble optimization method, we were able to generate a low-resolution, three-dimensional model of the native and the phosphorylated RD based on small-angle X-ray scattering data. We have obtained the first experiment-based model of the CFTR regulatory domain, which will be useful to understand the molecular mechanisms of normal and pathological CFTR functioning.

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Year:  2012        PMID: 23052212     DOI: 10.1007/s00018-012-1172-5

Source DB:  PubMed          Journal:  Cell Mol Life Sci        ISSN: 1420-682X            Impact factor:   9.261


  35 in total

Review 1.  Regulation of the cystic fibrosis transmembrane conductance regulator Cl- channel by its R domain.

Authors:  L S Ostedgaard; O Baldursson; M J Welsh
Journal:  J Biol Chem       Date:  2001-01-23       Impact factor: 5.157

2.  Domain location within the cystic fibrosis transmembrane conductance regulator protein investigated by electron microscopy and gold labelling.

Authors:  Liang Zhang; Luba A Aleksandrov; John R Riordan; Robert C Ford
Journal:  Biochim Biophys Acta       Date:  2010-08-19

3.  Structural characterization of flexible proteins using small-angle X-ray scattering.

Authors:  Pau Bernadó; Efstratios Mylonas; Maxim V Petoukhov; Martin Blackledge; Dmitri I Svergun
Journal:  J Am Chem Soc       Date:  2007-04-06       Impact factor: 15.419

4.  Mutation of potential phosphorylation sites in the recombinant R domain of the cystic fibrosis transmembrane conductance regulator has significant effects on domain conformation.

Authors:  A M Dulhanty; X B Chang; J R Riordan
Journal:  Biochem Biophys Res Commun       Date:  1995-01-05       Impact factor: 3.575

5.  The molten globule is a third thermodynamical state of protein molecules.

Authors:  O B Ptitsyn; V N Uversky
Journal:  FEBS Lett       Date:  1994-03-14       Impact factor: 4.124

6.  A short segment of the R domain of cystic fibrosis transmembrane conductance regulator contains channel stimulatory and inhibitory activities that are separable by sequence modification.

Authors:  Junxia Xie; Lynn M Adams; Jiying Zhao; Thomas A Gerken; Pamela B Davis; Jianjie Ma
Journal:  J Biol Chem       Date:  2002-04-11       Impact factor: 5.157

7.  Structural diversity in free and bound states of intrinsically disordered protein phosphatase 1 regulators.

Authors:  Joseph A Marsh; Barbara Dancheck; Michael J Ragusa; Marc Allaire; Julie D Forman-Kay; Wolfgang Peti
Journal:  Structure       Date:  2010-09-08       Impact factor: 5.006

8.  Cystic fibrosis transmembrane conductance regulator: a molecular model defines the architecture of the anion conduction path and locates a "bottleneck" in the pore.

Authors:  Yohei Norimatsu; Anthony Ivetac; Christopher Alexander; John Kirkham; Nicolette O'Donnell; David C Dawson; Mark S P Sansom
Journal:  Biochemistry       Date:  2012-03-07       Impact factor: 3.162

9.  Atomic model of human cystic fibrosis transmembrane conductance regulator: membrane-spanning domains and coupling interfaces.

Authors:  J-P Mornon; P Lehn; I Callebaut
Journal:  Cell Mol Life Sci       Date:  2008-08       Impact factor: 9.261

10.  Phenylalanine-508 mediates a cytoplasmic-membrane domain contact in the CFTR 3D structure crucial to assembly and channel function.

Authors:  Adrian W R Serohijos; Tamás Hegedus; Andrei A Aleksandrov; Lihua He; Liying Cui; Nikolay V Dokholyan; John R Riordan
Journal:  Proc Natl Acad Sci U S A       Date:  2008-02-27       Impact factor: 11.205

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  6 in total

1.  Functional and pharmacological induced structural changes of the cystic fibrosis transmembrane conductance regulator in the membrane solved using SAXS.

Authors:  Debora Baroni; Olga Zegarra-Moran; Oscar Moran
Journal:  Cell Mol Life Sci       Date:  2014-10-02       Impact factor: 9.261

Review 2.  Molecular modelling and molecular dynamics of CFTR.

Authors:  Isabelle Callebaut; Brice Hoffmann; Pierre Lehn; Jean-Paul Mornon
Journal:  Cell Mol Life Sci       Date:  2016-10-07       Impact factor: 9.261

Review 3.  The gating of the CFTR channel.

Authors:  Oscar Moran
Journal:  Cell Mol Life Sci       Date:  2016-10-01       Impact factor: 9.261

4.  Predicting Conformational Properties of Intrinsically Disordered Proteins from Sequence.

Authors:  Kiersten M Ruff
Journal:  Methods Mol Biol       Date:  2020

Review 5.  Structural changes of CFTR R region upon phosphorylation: a plastic platform for intramolecular and intermolecular interactions.

Authors:  Zoltan Bozoky; Mickael Krzeminski; P Andrew Chong; Julie D Forman-Kay
Journal:  FEBS J       Date:  2013-07-25       Impact factor: 5.542

Review 6.  Digested disorder: Quarterly intrinsic disorder digest (January/February/March, 2013).

Authors:  Vladimir N Uversky
Journal:  Intrinsically Disord Proteins       Date:  2013-04-01
  6 in total

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