| Literature DB >> 23052037 |
Karin Engström1, Shegufta Ameer, Ludovic Bernaudat, Gustav Drasch, Jennifer Baeuml, Staffan Skerfving, Stephan Bose-O'Reilly, Karin Broberg.
Abstract
BACKGROUND: Elemental mercury (Hg0) is widely used in small-scale gold mining. Persons working or living in mining areas have high urinary concentrations of Hg (U-Hg). Differences in genes encoding potential Hg-transporters may affect uptake and elimination of Hg.Entities:
Mesh:
Substances:
Year: 2012 PMID: 23052037 PMCID: PMC3553430 DOI: 10.1289/ehp.1204951
Source DB: PubMed Journal: Environ Health Perspect ISSN: 0091-6765 Impact factor: 9.031
Characteristics of the SNPsa under study in different countries.
| Gene | ID of SNPb | Type of SNPa | Allele frequenciesa | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Indonesia | Philippines | Tanzania | Zimbabwe | |||||||||
| MDR1 (ABCB1) | rs1045642 | Synonymous, C > A > T | 63/0/37 | 64/0/36 | 88/0/12 | 85/0/15 | ||||||
| MDR1 | rs2032582 | Non-synonymous, Ala > Thr > Ser | 52/5/43 | 43/9/48 | 98/0/2 | 100/0/0 | ||||||
| MRP1 (ABCC1) | rs11075290 | Intronic, C > T | 57/43 | 69/31 | 71/29 | 74/26 | ||||||
| MRP1 | rs41395947 | Non-synonymous, Cys > Ser | c | c | c | c | ||||||
| MRP2 (ABCC2) | rs1885301 | 5´ UTR/near gene, G > A | 76/24 | 78/22 | 63/37 | 66/34 | ||||||
| MRP2 | rs717620 | 5´ UTR/near gene, G > A | 80/20 | 85/15 | 99/1 | 99/1 | ||||||
| MRP2 | rs2273697 | Non-synonymous, Val > Ile, G > A | 97/3 | 89/11 | 79/21 | 83/17 | ||||||
| MRP2 | rs3740066 | Synonymous, G > A | 79/21 | 79/21 | 82/18 | 85/15 | ||||||
| OAT1 (SLC22A6) | rs4149170 | 5´ UTR, G > A | 80/20 | 88/12 | 62/38 | 53/47 | ||||||
| OAT1 | rs11568626 | Non-synonymous, Pro > His > Arg > Leu | 100/0/0/0 | 100/0/0/0 | 91/0/0/9 | 90/0/0/10 | ||||||
| OAT3 (SLC22A8) | rs4149182 | Intronic, G > C | 76/24 | 79/21 | 63/37 | 62/38 | ||||||
| OAT3 | rs45566039 | Non-synonymous, Arg > Ser | 100/0c | 100/0c | 100/0c | 100/0c | ||||||
| SLC3A2 | rs2282477 | 3´ UTR, C > T | c | c | c | c | ||||||
| SLC3A2 | rs77030286 | 5´ near gene, C > A | 100/0 | 100/0 | 100/0 | 100/0 | ||||||
| LAT1 (SLC7A5) | rs3815559 | Intronic, G > C | 89/11 | 90/10 | 65/35 | 72/28 | ||||||
| LAT1 | rs33916661 | 5´ UTR/near gene, A > G | 79/21 | 82/18 | 67/33 | 65/35 | ||||||
| LAT2 | rs12879346 | 5´ UTR/near gene, A > T | 64/36 | 66/34 | 63/37 | 67/33 | ||||||
| LAT2 | rs12588118 | Intronic, G > C | 89/11 | 87/13 | 84/16 | 82/18 | ||||||
| UTR, untranslated region. aThe most common allele in all four populations is given first. bRs (reference SNP ID) numbers are from the National Center for Biotechnology Information (2006). cData are missing due to genotyping failure. | ||||||||||||
Characteristics of the study populations.
| Characteristic | Indonesia | Philippines | Tanzania | Zimbabwe | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| n | Value | n | Value | n | Value | n | Value | |||||||||
| Age (years)a | 330 | 33 (13–58) | 245 | 37 (23–51) | 226 | 33 (16–51) | 216 | 28 (14–46) | ||||||||
| Sex | 330 | 245 | 226 | 215 | ||||||||||||
| Percent female | 46 | 38 | 38 | 35 | ||||||||||||
| Storage of Hg (%) | 325 | 243 | 224 | 215 | ||||||||||||
| Never | 35 | 60 | 36 | 30 | ||||||||||||
| At home | 39 | 24 | 42 | 63 | ||||||||||||
| At work | 25 | 16 | 21 | 7 | ||||||||||||
| BMI (kg/m2)b | 310 | 23 (18–31) | 245 | 24 (19–30) | 223 | 22 (17–31) | 211 | 21 (16–26) | ||||||||
| Alcohol consumption | 329 | 240 | 226 | 216 | ||||||||||||
| Percent no | 86 | 35 | 74 | 65 | ||||||||||||
| U-Hg (µg/g creatinine)b | ||||||||||||||||
| All | 330 | 4.2 (0.047–95) | 244 | 2.9 (0.40–44) | 221 | 1.0 (0.09–15) | 216 | 7.7 (0.91–160) | ||||||||
| Controls | 21 | 0.38 (0.094–1.3) | 40 | 2.0 (0.66–8.5) | 32 | 0.17 (0.047–0.63) | 45 | 0.12 (0.030–2.1) | ||||||||
| Low exposure | 106 | 2.8 (0.60–15) | 113 | 1.3 (0.28–8.9) | 52 | 0.41 (0.082–1.8) | 24 | 5.3 (0.43–65) | ||||||||
| High exposure | 203 | 6.7 (0.91–160) | 91 | 9.3 (1.3–61) | 137 | 2.0 (0.20–20) | 147 | 29 (2.3–210) | ||||||||
| aMean (5th–95th percentile).bGeometric mean (5th–95th percentile). | ||||||||||||||||
Multivariate analyses for MRP2 SNPs on U-Hg concentrations (µg/g creatinine).
| Location/ exposure subgroup | rs1885301 | rs1885301 | rs717620 | rs717620 | rs2273697 | |||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| GGa | GA | AA | p-Value | GGa | AA + AG | p-Value | GGa | GA | AA | p-Value | GGa | AA + GA | p-Value | GGa | AA + GAb | p-Value | ||||||
| Indonesia | ||||||||||||||||||||||
| Low | p (n) | 54 | 0.065 (47) | 0.15 (5) | 0.10 | 54 | 0.039 (52) | 0.039 | 61 | 0.31 (42) | 0.18 (8) | 0.32 | 61 | 0.18 (42) | 0.18 | 102 | (2) | c | ||||
| β (SE) | 0.42 (0.23) | 0.76 (0.52) | 0.46 (0.22) | 0.26 (0.25) | 0.58 (0.44) | 0.32 (0.24) | ||||||||||||||||
| High | p (n) | 119 | 0.14 (65) | 0.42 (15) | 0.29 | 119 | 0.12 (80) | 0.12 | 135 | 0.11 (54) | 0.10 (12) | 0.046 | 135 | 0.40 (66) | 0.40 | 184 | 0.22 (17) | 0.21 | ||||
| β (SE) | 0.34 (0.23) | 0.32 (0.39) | 0.34 (0.21) | 0.39 (0.24) | –0.76 (0.46) | 0.19 (0.23) | 0.46 (0.38) | |||||||||||||||
| All | p (n) | 190 | 0.075 (115) | 0.19 (20) | 0.12 | 190 | 0.046 (135) | 0.046 | 213 | 0.11 (89) | 0.52 (21) | 0.18 | 213 | 0.25 (110) | 0.25 | 306 | 0.20 (19) | 0.20 | ||||
| β (SE) | 0.28 (0.16) | 0.40 (0.31) | 0.30 (0.15) | 0.27 (0.17) | –0.20 (0.31) | 0.18 (0.16) | 0.41 (0.32) | |||||||||||||||
| Philippines | ||||||||||||||||||||||
| Low | p (n) | 71 | 0.11 (34) | 0.59 (7) | 0.20 | 71 | 0.23 (41) | 0.23 | 76 | 0.13 (23) | d | 0.13 | 76 | 0.13 (23) | 0.13 | 82 | 0.76 (19) | 0.76 | ||||
| β (SE) | 0.33 (0.20) | –0.20 (0.38) | 0.23 (0.19) | 0.39 (0.25) | 0.37 (0.24) | 0.08 (0.25) | ||||||||||||||||
| High | p (n) | 55 | 0.70 (29) | 0.24 (7) | 0.49 | 55 | 0.45 (36) | 0.45 | 51 | 0.95 (22) | 0.51 (5) | 0.45 | 51 | 0.86 (27) | 0.86 | 56 | 0.56 (22) | 0.55 | ||||
| β (SE) | 0.11 (0.29) | 0.61 (0.51) | 0.21 (0.27) | –0.02 (0.33) | 0.40 (0.62) | 0.05 (0.31) | –0.19 (0.33) | |||||||||||||||
| All | p (n) | 148 | 0.15 (78) | 0.33 (16) | 0.27 | 148 | 0.11 (94) | 0.11 | 158 | 0.061 (49) | 0.30 (9) | 0.12 | 158 | 0.041 (58) | 0.041 | 172 | 0.45 (46) | 0.44 | ||||
| β (SE) | 0.21 (0.15) | 0.27 (0.28) | 0.22 (0.14) | 0.33 (0.17) | 0.38 (0.36) | 0.33 (0.16) | –0.13 (0.18) | |||||||||||||||
| Tanzania | ||||||||||||||||||||||
| Low | p (n) | 16 | 0.49 (27) | 0.58 (7) | 0.75 | 16 | 0.44 (34) | 0.44 | 53 | (0) | (0) | c | 53 | (0) | c | 27 | 0.61 (24) | 0.61 | ||||
| β (SE) | 0.21 (0.30) | 0.24 (0.43) | 0.22 (0.28) | 0.14 (0.28) | ||||||||||||||||||
| High | p (n) | 54 | 0.62 (63) | 0.93 (19) | 0.88 | 54 | 0.66 (82) | 0.66 | 131 | (2) | (1) | c | 131 | (3) | c | 85 | 0.075 (46) | 0.075 | ||||
| β (SE) | 0.13 (0.26) | 0.03 (0.38) | 0.11 (0.25) | –0.45 (0.25) | ||||||||||||||||||
| All | p (n) | 85 | 0.55 (101) | 0.92 (32) | 0.82 | 85 | 0.60 (133) | 0.60 | 214 | 0.93 (5) | d | 0.93 | 214 | 0.93 (5) | 0.93 | 134 | 0.40 (80) | 0.40 | ||||
| β (SE) | 0.11 (0.19) | 0.03 (0.26) | 0.09 (0.17) | –0.05 (0.57) | –0.05 (0.57) | –0.15 (0.18) | ||||||||||||||||
| Zimbabwe | ||||||||||||||||||||||
| Low | p (n) | 7 | 0.63 (17) | 0.63 | 7 | 0.63 (17) | 0.63 | 24 | (0) | (0) | c | 24 | (0) | c | 17 | 0.97 (7) | 0.97 | |||||
| β (SE) | 0.32 (0.65) | 0.32 (0.65) | 0.02 (0.64) | |||||||||||||||||||
| High | p (n) | 63 | 0.036 (65) | 0.033 (18) | 0.030 | 63 | 0.013 (83) | 0.013 | 136 | 0.19 (5) | d | 136 | 0.19 (5) | 95 | 0.001 (46) | 0.001 | ||||||
| β (SE) | 0.47 (0.23) | 0.71 (0.33) | 0.53 (0.21) | 0.77 (0.58) | 0.19 | 0.77 (0.58) | 0.19 | –0.78 (0.22) | ||||||||||||||
| All | p (n) | 90 | 0.076 (103) | 0.15 (22) | 0.14 | 90 | 0.049 (125) | 0.049 | 204 | 0.17 (6) | d | 204 | 0.17 (6) | 147 | 0.022 (63) | 0.022 | ||||||
| β (SE) | 0.33 (0.18) | 0.43 (0.30) | 0.35 (0.18) | 0.72 (0.53) | 0.17 | 0.17 | 0.72 (0.53) | 0.17 | –0.44 (0.19) | |||||||||||||
| Asia | p (n) | 339 | 0.004 (194) | 0.13 (36) | 0.009 | 339 | 0.002 (230) | 0.002 | 373 | 0.004 (138) | 0.92 (30) | 0.015 | 373 | 0.010 (168) | 0.010 | 478 | 0.78 (65) | 0.78 | ||||
| β (SE) | 0.33 (0.11) | 0.34 (0.22) | 0.33 (0.11) | 0.38 (0.13) | 0.03 (0.25) | 0.31 (0.12) | 0.05 (0.17) | |||||||||||||||
| Africa | p (n) | 177 | 0.24 (206) | 0.86 (55) | 0.49 | 177 | 0.30 (261) | 0.30 | 418 | 0.26 (11) | d | 0.15 | 418 | 0.26 (11) | 0.26 | 281 | 0.025 (143) | 0.025 | ||||
| β (SE) | 0.21 (0.18) | 0.05 (0.27) | 0.17 (0.17) | 0.59 (0.53) | 0.26 | 0.59 (0.53) | –0.40 (0.18) | |||||||||||||||
| Multivariate analyses were adjusted for age, sex, and Hg storage in the “low” and “high” groups, and for age, sex, and exposure subgroup in the “All,” “Asia,” and “Africa” groups. Genotype, sex, exposure subgroup, and Hg storage were modeled as categorical (nominal) variables, and age was modeled as a continuous variable. U-HG was ln transformed. Unstandardized β-coefficients were derived from the comparison with the reference genotype, i.e., the estimated difference in ln-transformed U-Hg for two genotypes, as well as p-values and SE for these comparisons. p-Value is for the genotype term in the model. Control subgroups are not shown separately, but are included in the “All,” “Asia,” and “Africa” groups. aReference genotype. bRs2273697 AA + AG genotypes were pooled in all populations because of a low number of individuals with AA genotype. cNo analyses were run due to a low number (≤ 3) of individuals for all genotypes but one. dThe genotype was pooled with the heterozygotes due to a low number (≤ 3) of individuals. | ||||||||||||||||||||||
Multivariate analyses for LAT1, OAT1, and OAT3 SNPs on U-Hg concentrations (µg/g creatinine).
| Location/exposure subgroup | LAT1 rs33916661 | OAT1 rs4149170 | OAT3 rs4149182 | |||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| GGa | GA | AA | p-Value | GGa | GA | AA | p-Value | GGa | CG | CC | p-Value | |||||||||||||||
| Indonesia | ||||||||||||||||||||||||||
| Low | p (n) | 6 | 0.41 (40) | 0.61 (60) | 0.63 | 64 | 0.10 (35) | 0.031 (7) | 0.050 | 56 | 0.15 (42) | 0.97 (8) | 0.33 | |||||||||||||
| β (SE) | –0.41 (0.50) | –0.24 (0.48) | –0.39 (0.24) | –0.97 (0.45) | 0.34 (0.24) | –0.02 (0.43) | ||||||||||||||||||||
| High | p (n) | 10 | 0.68 (61) | 0.67 (125) | 0.20 | 135 | 0.68 (57) | 0.98 (9) | 0.92 | 125 | 0.60 (64) | 0.19 (10) | 0.33 | |||||||||||||
| β (SE) | –0.20 (0.49) | 0.20 (0.48) | –0.10 (0.23) | –0.01 (0.50) | –0.12 (0.22) | 0.62 (0.48) | ||||||||||||||||||||
| All | p (n) | 16 | 0.37 (106) | 0.91 (199) | 0.19 | 215 | 0.31 (93) | 0.40 (18) | 0.46 | 190 | 0.77 (116) | 0.41 (19) | 0.70 | |||||||||||||
| β (SE) | –0.32 (0.35) | –0.04 (0.34) | –0.17 (0.16) | –0.27 (0.32) | 0.05 (0.16) | 0.26 (0.32) | ||||||||||||||||||||
| Philippines | ||||||||||||||||||||||||||
| Low | p (n) | 0 | (33) | (80) | b | 92 | 0.60 (18) | c | 0.60 | 76 | 0.17 (30) | 0.29 (6) | 0.18 | |||||||||||||
| β (SE) | –0.086 (0.16) | –0.28 (0.20) | 0.44 (0.41) | |||||||||||||||||||||||
| High | p (n) | 4 | 0.84 (30) | 0.77 (53) | 0.94 | 65 | 0.72 (25) | c | 0.72 | 52 | 0.050 (35) | 0.63 (4) | 0.14 | |||||||||||||
| β (SE) | –0.13 (0.66) | –0.19 (0.64) | –0.11 (0.30) | –0.54 (0.27) | –0.31 (0.65) | |||||||||||||||||||||
| All | p (n) | 4 | 0.80 (77) | 0.74 (158) | 0.91 | 186 | 0.72 (49) | 0.47 (4) | 0.73 | 150 | 0.028 (81) | 0.93 (11) | 0.081 | |||||||||||||
| β (SE) | –0.14 (0.55) | –0.18 (0.54) | –0.06 (0.17) | –0.39 (0.54) | –0.32 (0.15) | 0.03 (0.33) | ||||||||||||||||||||
| Tanzania | ||||||||||||||||||||||||||
| Low | p (n) | 5 | 0.57 (19) | 0.76 (28) | 0.31 | 12 | 0.010 (24) | 0.022 (16) | 0.025 | 11 | 0.004 (23) | 0.002 (17) | 0.004 | |||||||||||||
| β (SE) | –0.28 (0.48) | 0.15 (0.49) | –0.81 (0.30) | –0.79 (0.33) | –0.91 (0.30) | –1.05 (0.32) | ||||||||||||||||||||
| High | p (n) | 18 | 0.060 (59) | 0.22 (58) | 0.16 | 48 | 0.49 (64) | 0.039 (25) | 0.024 | 46 | 0.85 (66) | 0.046 (25) | 0.059 | |||||||||||||
| β (SE) | –0.71 (0.37) | –0.46 (0.37) | 0.18 (0.27) | –0.70 (0.34) | 0.05 (0.27) | –0.69 (0.34) | ||||||||||||||||||||
| All | p (n) | 26 | 0.004 (93) | 0.064 (100) | 0.015 | 72 | 0.79 (102) | 0.024 (47) | 0.023 | 67 | 0.81 (105) | 0.010 (48) | 0.017 | |||||||||||||
| β (SE) | –0.79 (0.28) | –0.51 (0.27) | 0.05 (0.19) | –0.54 (0.24) | –0.05 (0.19) | –0.62 (0.24) | ||||||||||||||||||||
| Zimbabwe | ||||||||||||||||||||||||||
| Low | p (n) | 3 | (7) | (13) | b | 6 | 0.20 (14) | 0.27 (4) | 0.074 | 6 | 0.46 (14) | 0.19 (4) | 0.13 | |||||||||||||
| β (SE) | 0.83 (0.62) | –0.84 (0.73) | 0.49 (0.64) | –1.04 (0.76) | ||||||||||||||||||||||
| High | p (n) | 25 | 0.90 (62) | 0.51 (58) | 0.71 | 44 | 0.59 (65) | 0.81 (37) | 0.72 | 43 | 0.60 (64) | 0.70 (39) | 0.64 | |||||||||||||
| β (SE) | –0.04 (0.30) | –0.20 (0.30) | 0.13 (0.25) | –0.07 (0.28) | 0.13 (0.25) | –0.11 (0.28) | ||||||||||||||||||||
| All | p (n) | 31 | 0.61 (87) | 0.37 (94) | 0.65 | 64 | 0.57 (100) | 0.28 (51) | 0.22 | 63 | 0.72 (99) | 0.20 (53) | 0.24 | |||||||||||||
| β (SE) | –0.14 (0.27) | –0.24 (0.26) | 0.12 (0.20) | –0.26 (0.24) | 0.07 (0.21) | –0.30 (0.24) | ||||||||||||||||||||
| Asia | p (n) | 20 | 0.25 (183) | 0.32 (359) | 0.51 | 203 | 0.88 (142) | 0.32 (22) | 0.6 | 341 | 0.48 (198) | 0.48 (30) | 0.55 | |||||||||||||
| β (SE) | –0.34 (0.30) | –0.29 (0.29) | –0.02 (0.12) | –0.28 (0.28) | –0.08 (0.11) | 0.17 (0.24) | ||||||||||||||||||||
| Africa | p (n) | 57 | 0.017 (181) | 0.024 (198) | 0.046 | 136 | 0.34 (207) | 0.28 (98) | 0.12 | 230 | 0.66 (209) | 0.20 (101) | 0.19 | |||||||||||||
| β (SE) | –0.63 (0.26) | –0.59 (0.26) | 0.18 (0.19) | –0.25 (0.23) | 0.09 (0.19) | –0.29 (0.23) | ||||||||||||||||||||
| Multivariate analyses were adjusted for age, sex, and Hg storage in the “low” and “high” groups, and for age, sex, and exposure subgroup in the “All,” “Asia,” and “Africa” groups. Genotype, sex, exposure subgroup, and Hg storage were modeled as categorical (nominal) variables, and age was modeled as a continuous variable. U-HG was natural ln transformed. Unstandardized β-coefficients were derived from the comparison with the reference genotype, i.e., the estimated difference in ln-transformed U-Hg for two genotypes, as well as p-values and SE for these comparisons. p-Value is for the genotype term in the model. eControl subgroups are not shown separately, but are included in the “All,” “Asia,” and “Africa” groups. aReference genotype. bDenotes that no analyses were run because no individuals had the reference genotype. cThe genotype was pooled with the heterozygotes due to a low number (≤ 3) of individuals. | ||||||||||||||||||||||||||