Literature DB >> 23045508

Genome sequence of Pectobacterium sp. strain SCC3193.

J Patrik Koskinen1, Pia Laine, Outi Niemi, Johanna Nykyri, Heidi Harjunpää, Petri Auvinen, Lars Paulin, Minna Pirhonen, Tapio Palva, Liisa Holm.   

Abstract

We report the complete and annotated genome sequence of the plant-pathogenic enterobacterium Pectobacterium sp. strain SCC3193, a model strain isolated from potato in Finland. The Pectobacterium sp. SCC3193 genome consists of a 5,164,411-bp [corrected] chromosome, with no plasmids.

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Year:  2012        PMID： 23045508      PMCID： PMC3486080          DOI： 10.1128/JB.00681-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  8 in total

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3.  Genome sequencing in microfabricated high-density picolitre reactors.

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Journal:  Nature       Date:  2005-07-31       Impact factor: 49.962

4.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

5.  Prodigal: prokaryotic gene recognition and translation initiation site identification.

Authors:  Doug Hyatt; Gwo-Liang Chen; Philip F Locascio; Miriam L Land; Frank W Larimer; Loren J Hauser
Journal:  BMC Bioinformatics       Date:  2010-03-08       Impact factor: 3.169

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Authors:  M Pirhonen; P Heino; I Helander; P Harju; E T Palva
Journal:  Microb Pathog       Date:  1988-05       Impact factor: 3.738

7.  OrthoMCL: identification of ortholog groups for eukaryotic genomes.

Authors:  Li Li; Christian J Stoeckert; David S Roos
Journal:  Genome Res       Date:  2003-09       Impact factor: 9.043

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  8 in total
  5 in total

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Authors:  Slimane Khayi; Yannick Raoul des Essarts; Angélique Quêtu-Laurent; Mohieddine Moumni; Valérie Hélias; Denis Faure
Journal:  Genetica       Date:  2014-10-09       Impact factor: 1.082

2.  Detection, identification and differentiation of Pectobacterium and Dickeya species causing potato blackleg and tuber soft rot: a review.

Authors:  R Czajkowski; McM Pérombelon; S Jafra; E Lojkowska; M Potrykus; Jm van der Wolf; W Sledz
Journal:  Ann Appl Biol       Date:  2014-10-27       Impact factor: 2.750

3.  Comparative genomics of 84 Pectobacterium genomes reveals the variations related to a pathogenic lifestyle.

Authors:  Xiaoying Li; Yali Ma; Shuqing Liang; Yu Tian; Sanjun Yin; Sisi Xie; Hua Xie
Journal:  BMC Genomics       Date:  2018-12-07       Impact factor: 3.969

4.  Pathogenicity of and plant immunity to soft rot pectobacteria.

Authors:  Pär R Davidsson; Tarja Kariola; Outi Niemi; E T Palva
Journal:  Front Plant Sci       Date:  2013-06-11       Impact factor: 5.753

5.  SigmoID: a user-friendly tool for improving bacterial genome annotation through analysis of transcription control signals.

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Journal:  PeerJ       Date:  2016-05-24       Impact factor: 2.984
  5 in total

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