Literature DB >> 23045503

Genome sequence of Kocuria atrinae C3-8, isolated from Jeotgal, a traditional Korean fermented seafood.

Young-Do Nam1, Myung-Ji Seo, Seong-Il Lim, So-Lim Park.   

Abstract

Kocuria is a Gram-positive coccus, catalase-positive, coagulase-negative, strictly aerobic bacterial genus in the family Micrococcaceae. Kocuria atrinae C3-8 was isolated from a traditional Korean fermented seafood. This study describes the first genome sequence of K. atrinae strain C3-8, which has a 3.19-Mbp genome and a G+C content of 63.8%.

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Year:  2012        PMID： 23045503      PMCID： PMC3486115          DOI： 10.1128/JB.01333-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  9 in total

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Authors:  Seong Woon Roh; Kyoung-Ho Kim; Young-Do Nam; Ho-Won Chang; Eun-Jin Park; Jin-Woo Bae
Journal:  ISME J       Date:  2009-07-09       Impact factor: 10.302

2.  An integrated semiconductor device enabling non-optical genome sequencing.

Authors:  Jonathan M Rothberg; Wolfgang Hinz; Todd M Rearick; Jonathan Schultz; William Mileski; Mel Davey; John H Leamon; Kim Johnson; Mark J Milgrew; Matthew Edwards; Jeremy Hoon; Jan F Simons; David Marran; Jason W Myers; John F Davidson; Annika Branting; John R Nobile; Bernard P Puc; David Light; Travis A Clark; Martin Huber; Jeffrey T Branciforte; Isaac B Stoner; Simon E Cawley; Michael Lyons; Yutao Fu; Nils Homer; Marina Sedova; Xin Miao; Brian Reed; Jeffrey Sabina; Erika Feierstein; Michelle Schorn; Mohammad Alanjary; Eileen Dimalanta; Devin Dressman; Rachel Kasinskas; Tanya Sokolsky; Jacqueline A Fidanza; Eugeni Namsaraev; Kevin J McKernan; Alan Williams; G Thomas Roth; James Bustillo
Journal:  Nature       Date:  2011-07-20       Impact factor: 49.962

3.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

4.  Kocuria atrinae sp. nov., isolated from traditional Korean fermented seafood.

Authors:  Eun-Jin Park; Min-Soo Kim; Seong Woon Roh; Mi-Ja Jung; Jin-Woo Bae
Journal:  Int J Syst Evol Microbiol       Date:  2009-08-06       Impact factor: 2.747

5.  Kocuria salsicia sp. nov., isolated from salt-fermented seafood.

Authors:  Ji-Hyun Yun; Seong Woon Roh; Mi-Ja Jung; Min-Soo Kim; Eun-Jin Park; Kee-Sun Shin; Young-Do Nam; Jin-Woo Bae
Journal:  Int J Syst Evol Microbiol       Date:  2010-03-12       Impact factor: 2.747

6.  Taxonomic dissection of the genus Micrococcus: Kocuria gen. nov., Nesterenkonia gen. nov., Kytococcus gen. nov., Dermacoccus gen. nov., and Micrococcus Cohn 1872 gen. emend.

Authors:  E Stackebrandt; C Koch; O Gvozdiak; P Schumann
Journal:  Int J Syst Bacteriol       Date:  1995-10

7.  Kocuria koreensis sp. nov., isolated from fermented seafood.

Authors:  Eun-Jin Park; Seong Woon Roh; Min-Soo Kim; Mi-Ja Jung; Kee-Sun Shin; Jin-Woo Bae
Journal:  Int J Syst Evol Microbiol       Date:  2009-07-31       Impact factor: 2.747

8.  RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Authors:  Karin Lagesen; Peter Hallin; Einar Andreas Rødland; Hans-Henrik Staerfeldt; Torbjørn Rognes; David W Ussery
Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971

9.  The RAST Server: rapid annotations using subsystems technology.

Authors:  Ramy K Aziz; Daniela Bartels; Aaron A Best; Matthew DeJongh; Terrence Disz; Robert A Edwards; Kevin Formsma; Svetlana Gerdes; Elizabeth M Glass; Michael Kubal; Folker Meyer; Gary J Olsen; Robert Olson; Andrei L Osterman; Ross A Overbeek; Leslie K McNeil; Daniel Paarmann; Tobias Paczian; Bruce Parrello; Gordon D Pusch; Claudia Reich; Rick Stevens; Olga Vassieva; Veronika Vonstein; Andreas Wilke; Olga Zagnitko
Journal:  BMC Genomics       Date:  2008-02-08       Impact factor: 3.969
  9 in total
  3 in total

1.  High-quality draft genome sequence of Kocuria marina SO9-6, an actinobacterium isolated from a copper mine.

Authors:  Daniel B A Castro; Letícia Bianca Pereira; Marcus Vinícius M E Silva; Bárbara P da Silva; Bruna Rafaella Z Palermo; Camila Carlos; Daiane R B Belgini; Elmer Erasmo G Limache; Gileno V Jr Lacerda; Mariana B P Nery; Milene B Gomes; Salatiel S de Souza; Thiago M da Silva; Viviane D Rodrigues; Luciana C Paulino; Renato Vicentini; Lúcio F C Ferraz; Laura M M Ottoboni
Journal:  Genom Data       Date:  2015-05-16

2.  Draft Genome Sequence of Kocuria sp. Strain UCD-OTCP (Phylum Actinobacteria).

Authors:  David A Coil; Jessica I Doctor; Jenna M Lang; Aaron E Darling; Jonathan A Eisen
Journal:  Genome Announc       Date:  2013-05-09

3.  Metagenomic analysis and the functional profiles of traditional fermented pork fat 'sa-um' of Northeast India.

Authors:  Surajit De Mandal; Sambanduram Samarjit Singh; Rajendra Bose Muthukumaran; Kawl Thanzami; Vinod Kumar; Nachimuthu Senthil Kumar
Journal:  AMB Express       Date:  2018-10-08       Impact factor: 3.298
  3 in total

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