Literature DB >> 23045495

Whole-genome sequence of Enterobacter sp. strain SST3, an endophyte isolated from Jamaican sugarcane (Saccharum sp.) stalk tissue.

Han Ming Gan1, Sean E McGroty, Teong Han Chew, Kok Gan Chan, Larry J Buckley, Michael A Savka, André O Hudson.   

Abstract

Enterobacter sp. strain SST3 is an endophytic bacterium isolated from Saccharum spp. Here we present its annotated draft genome that may shed light on its role as a bacterial endophyte of sugarcane. To our knowledge, this is the first genome announcement of a sugarcane-associated bacterium from the genus Enterobacter.

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Year:  2012        PMID： 23045495      PMCID： PMC3486074          DOI： 10.1128/JB.01469-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  6 in total

1.  Diversity of endophytic bacteria in Brazilian sugarcane.

Authors:  G S Magnani; C M Didonet; L M Cruz; C F Picheth; F O Pedrosa; E M Souza
Journal:  Genet Mol Res       Date:  2010-02-09

2.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

3.  Prodigal: prokaryotic gene recognition and translation initiation site identification.

Authors:  Doug Hyatt; Gwo-Liang Chen; Philip F Locascio; Miriam L Land; Frank W Larimer; Loren J Hauser
Journal:  BMC Bioinformatics       Date:  2010-03-08       Impact factor: 3.169

4.  Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research.

Authors:  Ana Conesa; Stefan Götz; Juan Miguel García-Gómez; Javier Terol; Manuel Talón; Montserrat Robles
Journal:  Bioinformatics       Date:  2005-08-04       Impact factor: 6.937

5.  Plant growth-promoting nitrogen-fixing enterobacteria are in association with sugarcane plants growing in Guangxi, China.

Authors:  Li Lin; Zhengyi Li; Chunjin Hu; Xincheng Zhang; Siping Chang; Litao Yang; Yangrui Li; Qianli An
Journal:  Microbes Environ       Date:  2012-04-18       Impact factor: 2.912

6.  RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Authors:  Karin Lagesen; Peter Hallin; Einar Andreas Rødland; Hans-Henrik Staerfeldt; Torbjørn Rognes; David W Ussery
Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971
  6 in total
  5 in total

1.  Genomic and transcriptomic analyses of colistin-resistant clinical isolates of Klebsiella pneumoniae reveal multiple pathways of resistance.

Authors:  Meredith S Wright; Yo Suzuki; Marcus B Jones; Steven H Marshall; Susan D Rudin; David van Duin; Keith Kaye; Michael R Jacobs; Robert A Bonomo; Mark D Adams
Journal:  Antimicrob Agents Chemother       Date:  2014-11-10       Impact factor: 5.191

2.  Complete Genome Sequence of Enterobacter sp. Strain R4-368, an Endophytic N-Fixing Gammaproteobacterium Isolated from Surface-Sterilized Roots of Jatropha curcas L.

Authors:  Munusamy Madhaiyan; Ni Peng; Lianghui Ji
Journal:  Genome Announc       Date:  2013-08-01

3.  Isolation and genomic characterization of six endophytic bacteria isolated from Saccharum sp (sugarcane): Insights into antibiotic, secondary metabolite and quorum sensing metabolism.

Authors:  Anutthaman Parthasarathy; Han Ming Gan; Narayan H Wong; Michael A Savka; KayLee K Steiner; Kurtis R Henry; André O Hudson
Journal:  J Genomics       Date:  2018-10-02

4.  High-Quality Draft Whole-Genome Sequences of Three Strains of Enterobacter Isolated from Jamaican Dioscorea cayenensis (Yellow Yam).

Authors:  Han Ming Gan; Alexander J Triassi; Matthew S Wheatley; Michael A Savka; André O Hudson
Journal:  Genome Announc       Date:  2014-03-13

Review 5.  "Omics" Tools for Better Understanding the Plant-Endophyte Interactions.

Authors:  Sanjana Kaul; Tanwi Sharma; Manoj K Dhar
Journal:  Front Plant Sci       Date:  2016-06-29       Impact factor: 5.753
  5 in total

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