Literature DB >> 23045489

Genomic comparison of Kingella kingae strains.

Pierre-Edouard Fournier1, Laetitia Rouli, Khalid El Karkouri, Thi-Tien Nguyen, Pablo Yagupsky, Didier Raoult.   

Abstract

Kingella kingae is a betaproteobacterium from the order Neisseriales, and it is an agent of invasive infections in children. We sequenced the genome from the septic arthritis strain 11220434. It is composed of a 1,990,794-bp chromosome but no plasmid, and it contains 2,042 protein-coding genes and 52 RNA genes, including 3 rRNA genes.

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Year:  2012        PMID： 23045489      PMCID： PMC3486087          DOI： 10.1128/JB.01418-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  10 in total

1.  The COG database: a tool for genome-scale analysis of protein functions and evolution.

Authors:  R L Tatusov; M Y Galperin; D A Natale; E V Koonin
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  Genome sequencing in microfabricated high-density picolitre reactors.

Authors:  Marcel Margulies; Michael Egholm; William E Altman; Said Attiya; Joel S Bader; Lisa A Bemben; Jan Berka; Michael S Braverman; Yi-Ju Chen; Zhoutao Chen; Scott B Dewell; Lei Du; Joseph M Fierro; Xavier V Gomes; Brian C Godwin; Wen He; Scott Helgesen; Chun Heen Ho; Chun He Ho; Gerard P Irzyk; Szilveszter C Jando; Maria L I Alenquer; Thomas P Jarvie; Kshama B Jirage; Jong-Bum Kim; James R Knight; Janna R Lanza; John H Leamon; Steven M Lefkowitz; Ming Lei; Jing Li; Kenton L Lohman; Hong Lu; Vinod B Makhijani; Keith E McDade; Michael P McKenna; Eugene W Myers; Elizabeth Nickerson; John R Nobile; Ramona Plant; Bernard P Puc; Michael T Ronan; George T Roth; Gary J Sarkis; Jan Fredrik Simons; John W Simpson; Maithreyan Srinivasan; Karrie R Tartaro; Alexander Tomasz; Kari A Vogt; Greg A Volkmer; Shally H Wang; Yong Wang; Michael P Weiner; Pengguang Yu; Richard F Begley; Jonathan M Rothberg
Journal:  Nature       Date:  2005-07-31       Impact factor: 49.962

Review 3.  A genomic perspective on protein families.

Authors:  R L Tatusov; E V Koonin; D J Lipman
Journal:  Science       Date:  1997-10-24       Impact factor: 47.728

4.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

Review 5.  Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.

Authors:  S F Altschul; T L Madden; A A Schäffer; J Zhang; Z Zhang; W Miller; D J Lipman
Journal:  Nucleic Acids Res       Date:  1997-09-01       Impact factor: 16.971

Review 6.  Kingella kingae: an emerging pathogen in young children.

Authors:  Pablo Yagupsky; Eric Porsch; Joseph W St Geme
Journal:  Pediatrics       Date:  2011-02-14       Impact factor: 7.124

7.  Specific real-time polymerase chain reaction places Kingella kingae as the most common cause of osteoarticular infections in young children.

Authors:  Sylvia Chometon; Yvonne Benito; Mourad Chaker; Sandrine Boisset; Christine Ploton; Jérôme Bérard; François Vandenesch; Anne Marie Freydiere
Journal:  Pediatr Infect Dis J       Date:  2007-05       Impact factor: 2.129

8.  Genome sequence of Kingella kingae septic arthritis isolate PYKK081.

Authors:  Jeffrey B Kaplan; Chienchi Lo; Gary Xie; Shannon L Johnson; Patrick S G Chain; Robert Donnelly; Scott C Kachlany; Nataliya V Balashova
Journal:  J Bacteriol       Date:  2012-06       Impact factor: 3.490

9.  The Pfam protein families database.

Authors:  Marco Punta; Penny C Coggill; Ruth Y Eberhardt; Jaina Mistry; John Tate; Chris Boursnell; Ningze Pang; Kristoffer Forslund; Goran Ceric; Jody Clements; Andreas Heger; Liisa Holm; Erik L L Sonnhammer; Sean R Eddy; Alex Bateman; Robert D Finn
Journal:  Nucleic Acids Res       Date:  2011-11-29       Impact factor: 16.971

10.  The RAST Server: rapid annotations using subsystems technology.

Authors:  Ramy K Aziz; Daniela Bartels; Aaron A Best; Matthew DeJongh; Terrence Disz; Robert A Edwards; Kevin Formsma; Svetlana Gerdes; Elizabeth M Glass; Michael Kubal; Folker Meyer; Gary J Olsen; Robert Olson; Andrei L Osterman; Ross A Overbeek; Leslie K McNeil; Daniel Paarmann; Tobias Paczian; Bruce Parrello; Gordon D Pusch; Claudia Reich; Rick Stevens; Olga Vassieva; Veronika Vonstein; Andreas Wilke; Olga Zagnitko
Journal:  BMC Genomics       Date:  2008-02-08       Impact factor: 3.969
  10 in total
  7 in total

Review 1.  Kingella kingae: carriage, transmission, and disease.

Authors:  Pablo Yagupsky
Journal:  Clin Microbiol Rev       Date:  2015-01       Impact factor: 26.132

2.  Major intercontinentally distributed sequence types of Kingella kingae and development of a rapid molecular typing tool.

Authors:  Romain Basmaci; Philippe Bidet; Pablo Yagupsky; Carmen Muñoz-Almagro; Nataliya V Balashova; Catherine Doit; Stéphane Bonacorsi
Journal:  J Clin Microbiol       Date:  2014-08-20       Impact factor: 5.948

3.  Phasevarion-Regulated Virulence in the Emerging Pediatric Pathogen Kingella kingae.

Authors:  Yogitha N Srikhanta; Ka Yee Fung; Georgina L Pollock; Vicki Bennett-Wood; Benjamin P Howden; Elizabeth L Hartland
Journal:  Infect Immun       Date:  2017-11-17       Impact factor: 3.441

4.  Investigation of Kingella kingae Invasive Infection Outbreaks in Day Care Facilities: Assessment of a Rapid Genotyping Tool Targeting the DNA Uptake Sequence.

Authors:  Philippe Bidet; Violaine Tran Quang; Pablo Yagusky; André Birgy; Stéphane Bonacorsi; Romain Basmaci
Journal:  J Clin Microbiol       Date:  2017-05-24       Impact factor: 5.948

5.  Characterization of TEM-1 β-Lactamase-Producing Kingella kingae Clinical Isolates.

Authors:  Anushree Banerjee; Jeffrey B Kaplan; Amenah Soherwardy; Yoav Nudell; Grace A Mackenzie; Shannon Johnson; Nataliya V Balashova
Journal:  Antimicrob Agents Chemother       Date:  2013-06-24       Impact factor: 5.191

6.  A New Highly Sensitive and Specific Real-Time PCR Assay Targeting the Malate Dehydrogenase Gene of Kingella kingae and Application to 201 Pediatric Clinical Specimens.

Authors:  Nawal El Houmami; Guillaume André Durand; Janek Bzdrenga; Anne Darmon; Philippe Minodier; Hervé Seligmann; Didier Raoult; Pierre-Edouard Fournier
Journal:  J Clin Microbiol       Date:  2018-07-26       Impact factor: 5.948

7.  Kingella kingae KK247, an Atypical Pulsed-Field Gel Electrophoresis Clone A Strain.

Authors:  Laetitia Rouli; Catherine Robert; Didier Raoult; Pablo Yagupsky
Journal:  Genome Announc       Date:  2014-11-26
  7 in total

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