Literature DB >> 23043329

Discovery of selective and potent inhibitors of gram-positive bacterial thymidylate kinase (TMK).

Gabriel Martínez-Botella1, John N Breen, James E S Duffy, Jacques Dumas, Bolin Geng, Ian K Gowers, Oluyinka M Green, Satenig Guler, Martin F Hentemann, Felix A Hernandez-Juan, Diane Joseph-McCarthy, Sameer Kawatkar, Nicholas A Larsen, Ovadia Lazari, James T Loch, Jacqueline A Macritchie, Andrew R McKenzie, Joseph V Newman, Nelson B Olivier, Linda G Otterson, Andrew P Owens, Jon Read, David W Sheppard, Thomas A Keating.   

Abstract

Thymidylate kinase (TMK) is an essential enzyme in bacterial DNA synthesis. The deoxythymidine monophosphate (dTMP) substrate binding pocket was targeted in a rational-design, structure-supported effort, yielding a unique series of antibacterial agents showing a novel, induced-fit binding mode. Lead optimization, aided by X-ray crystallography, led to picomolar inhibitors of both Streptococcus pneumoniae and Staphylococcus aureus TMK. MICs < 1 μg/mL were achieved against methicillin-resistant S. aureus (MRSA), S. pneumoniae, and vancomycin-resistant Enterococcus (VRE). Log D adjustments yielded single diastereomers 14 (TK-666) and 46, showing a broad antibacterial spectrum against Gram-positive bacteria and excellent selectivity against the human thymidylate kinase ortholog.

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Year:  2012        PMID: 23043329     DOI: 10.1021/jm3011806

Source DB:  PubMed          Journal:  J Med Chem        ISSN: 0022-2623            Impact factor:   7.446


  8 in total

1.  A novel high-throughput cell-based assay aimed at identifying inhibitors of DNA metabolism in bacteria.

Authors:  Jun Fan; Boudewijn L M de Jonge; Kathy MacCormack; Shubha Sriram; Robert E McLaughlin; Helen Plant; Marian Preston; Paul R Fleming; Robert Albert; Melinda Foulk; Scott D Mills
Journal:  Antimicrob Agents Chemother       Date:  2014-09-22       Impact factor: 5.191

2.  Three-Component Olefin Dicarbofunctionalization Enabled by Nickel/Photoredox Dual Catalysis.

Authors:  Mark W Campbell; Jordan S Compton; Christopher B Kelly; Gary A Molander
Journal:  J Am Chem Soc       Date:  2019-12-13       Impact factor: 15.419

3.  1-(1-Arylethylpiperidin-4-yl)thymine Analogs as Antimycobacterial TMPK Inhibitors.

Authors:  Yanlin Jian; Fabian Hulpia; Martijn D P Risseeuw; He Eun Forbes; Guy Caljon; Hélène Munier-Lehmann; Helena I M Boshoff; Serge Van Calenbergh
Journal:  Molecules       Date:  2020-06-17       Impact factor: 4.411

4.  The structural basis of unique substrate recognition by Plasmodium thymidylate kinase: Molecular dynamics simulation and inhibitory studies.

Authors:  Mahmoud Kandeel; Yukio Kitade; Abdulla Al-Taher; Mohammed Al-Nazawi
Journal:  PLoS One       Date:  2019-02-07       Impact factor: 3.240

5.  Halogenated Pyrrolopyrimidines with Low MIC on Staphylococcus aureus and Synergistic Effects with an Antimicrobial Peptide.

Authors:  Cecilie Elisabeth Olsen; Fredrik Heen Blindheim; Caroline Krogh Søgaard; Lisa Marie Røst; Amanda Holstad Singleton; Olaug Elisabeth Torheim Bergum; Per Bruheim; Marit Otterlei; Eirik Sundby; Bård Helge Hoff
Journal:  Antibiotics (Basel)       Date:  2022-07-22

6.  Bacterial Cytological Profiling Identifies Rhodanine-Containing PAINS Analogs as Specific Inhibitors of Escherichia coli Thymidylate Kinase In Vivo.

Authors:  Elizabeth T Montaño; Jason F Nideffer; Joseph Sugie; Eray Enustun; Adam B Shapiro; Hannah Tsunemoto; Alan I Derman; Kit Pogliano; Joe Pogliano
Journal:  J Bacteriol       Date:  2021-09-08       Impact factor: 3.490

7.  Inhibition of Mycoplasma pneumoniae growth by FDA-approved anticancer and antiviral nucleoside and nucleobase analogs.

Authors:  Ren Sun; Liya Wang
Journal:  BMC Microbiol       Date:  2013-08-06       Impact factor: 3.605

8.  In silico Design and Synthesis of Tetrahydropyrimidinones and Tetrahydropyrimidinethiones as Potential Thymidylate Kinase Inhibitors Exerting Anti-TB Activity Against Mycobacterium tuberculosis.

Authors:  Katharigatta N Venugopala; Christophe Tratrat; Melendhran Pillay; Sandeep Chandrashekharappa; Omar Husham Ahmed Al-Attraqchi; Bandar E Aldhubiab; Mahesh Attimarad; Osama I Alwassil; Anroop B Nair; Nagaraja Sreeharsha; Rashmi Venugopala; Mohamed A Morsy; Michelyne Haroun; Hezekiel M Kumalo; Bharti Odhav; Koleka Mlisana
Journal:  Drug Des Devel Ther       Date:  2020-03-09       Impact factor: 4.162

  8 in total

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