Literature DB >> 23042823

Protein structure networks.

Lesley H Greene1.   

Abstract

The application of the field of network science to the scientific disciplines of structural biology and biochemistry, have yielded important new insights into the nature and determinants of protein structures, function, dynamics and the folding process. Advancements in further understanding protein relationships through network science have also reshaped the way we view the connectivity of proteins in the protein universe. The canonical hierarchical classification can now be visualized for example, as a protein fold continuum. This review will survey several key advances in the expanding area of research being conducted to study protein structures and folding using network approaches.

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Year:  2012        PMID: 23042823     DOI: 10.1093/bfgp/els039

Source DB:  PubMed          Journal:  Brief Funct Genomics        ISSN: 2041-2649            Impact factor:   4.241


  19 in total

1.  Network Connectivity, Centrality and Fragmentation in the Greek-Key Protein Topology.

Authors:  Zeinab Haratipour; Hind Aldabagh; Yaohang Li; Lesley H Greene
Journal:  Protein J       Date:  2019-10       Impact factor: 2.371

Review 2.  Building Bridges Between Structural and Network-Based Systems Biology.

Authors:  Christos T Chasapis
Journal:  Mol Biotechnol       Date:  2019-03       Impact factor: 2.695

3.  NAPS: Network Analysis of Protein Structures.

Authors:  Broto Chakrabarty; Nita Parekh
Journal:  Nucleic Acids Res       Date:  2016-05-05       Impact factor: 16.971

4.  NPPD: A Protein-Protein Docking Scoring Function Based on Dyadic Differences in Networks of Hydrophobic and Hydrophilic Amino Acid Residues.

Authors:  Edward S C Shih; Ming-Jing Hwang
Journal:  Biology (Basel)       Date:  2015-03-24

5.  A comparative study of cold- and warm-adapted Endonucleases A using sequence analyses and molecular dynamics simulations.

Authors:  Davide Michetti; Bjørn Olav Brandsdal; Davide Bon; Geir Villy Isaksen; Matteo Tiberti; Elena Papaleo
Journal:  PLoS One       Date:  2017-02-13       Impact factor: 3.240

6.  Comparative Study of Elastic Network Model and Protein Contact Network for Protein Complexes: The Hemoglobin Case.

Authors:  Guang Hu; Luisa Di Paola; Zhongjie Liang; Alessandro Giuliani
Journal:  Biomed Res Int       Date:  2017-01-22       Impact factor: 3.411

7.  Molecular mechanism of modulating arrestin conformation by GPCR phosphorylation.

Authors:  Andrija Sente; Raphael Peer; Ashish Srivastava; Mithu Baidya; Arthur M Lesk; Santhanam Balaji; Arun K Shukla; M Madan Babu; Tilman Flock
Journal:  Nat Struct Mol Biol       Date:  2018-06-05       Impact factor: 15.369

8.  Evolution of fold switching in a metamorphic protein.

Authors:  Acacia F Dishman; Robert C Tyler; Jamie C Fox; Andrew B Kleist; Kenneth E Prehoda; M Madan Babu; Francis C Peterson; Brian F Volkman
Journal:  Science       Date:  2021-01-01       Impact factor: 47.728

9.  Self-assembled peptide and protein nanostructures for anti-cancer therapy: Targeted delivery, stimuli-responsive devices and immunotherapy.

Authors:  Masoud Delfi; Rossella Sartorius; Milad Ashrafizadeh; Esmaeel Sharifi; Yapei Zhang; Piergiuseppe De Berardinis; Ali Zarrabi; Rajender S Varma; Franklin R Tay; Bryan Ronain Smith; Pooyan Makvandi
Journal:  Nano Today       Date:  2021-03-11       Impact factor: 18.962

10.  RINspector: a Cytoscape app for centrality analyses and DynaMine flexibility prediction.

Authors:  Guillaume Brysbaert; Kevin Lorgouilloux; Wim F Vranken; Marc F Lensink
Journal:  Bioinformatics       Date:  2018-01-15       Impact factor: 6.937

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