Literature DB >> 23040048

Sample preparation induced artifacts in cryo-electron tomographs.

Pavel Plevka1, Anthony J Battisti, Dennis C Winkler, Kaspars Tars, Heather A Holdaway, Carol M Bator, Michael G Rossmann.   

Abstract

We investigated the effects of sample preparation and of the exposure to an electron beam on particles in cryo-electron tomographs. Various virus particles with icosahedral symmetry were examined, allowing a comparison of symmetrically related components that should be identical in structure but might be affected differently by these imaging artifacts. Comparison of tomographic reconstructions with previously determined structures established by an independent method showed that neither freezing nor electron beam exposure produced a significant amount of shrinkage along the z axis (thickness). However, we observed damage to regions of the particles located close to the surface of the vitreous ice.

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Year:  2012        PMID: 23040048      PMCID: PMC3507990          DOI: 10.1017/S1431927612001298

Source DB:  PubMed          Journal:  Microsc Microanal        ISSN: 1431-9276            Impact factor:   4.127


  17 in total

1.  EMAN: semiautomated software for high-resolution single-particle reconstructions.

Authors:  S J Ludtke; P R Baldwin; W Chiu
Journal:  J Struct Biol       Date:  1999-12-01       Impact factor: 2.867

2.  Automated electron microscope tomography using robust prediction of specimen movements.

Authors:  David N Mastronarde
Journal:  J Struct Biol       Date:  2005-10       Impact factor: 2.867

3.  Observations on the behavior of vitreous ice at approximately 82 and approximately 12 K.

Authors:  Elizabeth R Wright; Cristina V Iancu; William F Tivol; Grant J Jensen
Journal:  J Struct Biol       Date:  2006-01-05       Impact factor: 2.867

4.  Computer visualization of three-dimensional image data using IMOD.

Authors:  J R Kremer; D N Mastronarde; J R McIntosh
Journal:  J Struct Biol       Date:  1996 Jan-Feb       Impact factor: 2.867

Review 5.  Not your average density.

Authors:  G J Kleywegt; R J Read
Journal:  Structure       Date:  1997-12-15       Impact factor: 5.006

6.  A method for monitoring the collapse of plastic sections as a function of electron dose.

Authors:  P K Luther; M C Lawrence; R A Crowther
Journal:  Ultramicroscopy       Date:  1988       Impact factor: 2.689

7.  The cell surface glycoprotein layer of the extreme halophile Halobacterium salinarum and its relation to Haloferax volcanii: cryo-electron tomography of freeze-substituted cells and projection studies of negatively stained envelopes.

Authors:  S Trachtenberg; B Pinnick; M Kessel
Journal:  J Struct Biol       Date:  2000-05       Impact factor: 2.867

8.  Electron-irradiation-induced flattening of negatively stained 2D protein crystals.

Authors:  J C Jésior; R H Wade
Journal:  Ultramicroscopy       Date:  1987       Impact factor: 2.689

9.  Nucleocapsid and glycoprotein organization in an enveloped virus.

Authors:  R H Cheng; R J Kuhn; N H Olson; M G Rossmann; H K Choi; T J Smith; T S Baker
Journal:  Cell       Date:  1995-02-24       Impact factor: 41.582

10.  Cryo automated electron tomography: towards high-resolution reconstructions of plastic-embedded structures.

Authors:  M B Braunfeld; A J Koster; J W Sedat; D A Agard
Journal:  J Microsc       Date:  1994-05       Impact factor: 1.758

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