The kinetics of triplet state quenching of 3,3',4,4'-benzophenone tetracarboxylic acid (BPTC) by DNA bases adenine, adenosine, thymine, and thymidine has been investigated in aqueous solution using time-resolved laser flash photolysis. The observation of the BPTC ketyl radical anion at λ(max) = 630 nm indicates that one electron transfer is involved in the quenching reactions. The pH-dependence of the quenching rate constants is measured in detail. As a result, the chemical reactivity of the reactants is assigned. The bimolecular rate constants of the quenching reactions between triplet BPTC and adenine, adenosine, thymine, and thymidine are k(q) = 2.3 × 10(9) (4.7 < pH < 9.9), k(q) = 4.0 × 10(9) (3.5 < pH < 4.7), k(q) = 1.0 × 10(9) (4.7 < pH < 9.9), and k(q) = 4.0 × 10(8) M(-1) s(-1) (4.7 < pH < 9.8), respectively. Moreover, it reveals that in strong basic medium (pH = 12.0) a keto-enol tautomerism of thymine inhibits its reaction with triplet BPTC. Such a behavior is not possible for thymidine because of its deoxyribose group. In addition, the pH-dependence of the apparent electrochemical standard potential of thymine in aqueous solution was investigated by cyclic voltammetry. The ΔE/ΔpH ≈ -59 mV/pH result is characteristic of proton-coupled electron transfer. This behavior, together with the kinetic analysis, leads to the conclusion that the quenching reactions between triplet BPTC and thymine involve one proton-coupled electron transfer.
The kinetics of triplet state quenching of 3,3',4,4'-benzophenone tetracarboxylic acid (BPTC) by DNA bases adenine, adenosine, thymine, and thymidine has been investigated in aqueous solution using time-resolved laser flash photolysis. The observation of the BPTC ketyl radical anion at λ(max) = 630 nm indicates that one electron transfer is involved in the quenching reactions. The pH-dependence of the quenching rate constants is measured in detail. As a result, the chemical reactivity of the reactants is assigned. The bimolecular rate constants of the quenching reactions between triplet BPTC and adenine, adenosine, thymine, and thymidine are k(q) = 2.3 × 10(9) (4.7 < pH < 9.9), k(q) = 4.0 × 10(9) (3.5 < pH < 4.7), k(q) = 1.0 × 10(9) (4.7 < pH < 9.9), and k(q) = 4.0 × 10(8) M(-1) s(-1) (4.7 < pH < 9.8), respectively. Moreover, it reveals that in strong basic medium (pH = 12.0) a keto-enol tautomerism of thymine inhibits its reaction with triplet BPTC. Such a behavior is not possible for thymidine because of its deoxyribose group. In addition, the pH-dependence of the apparent electrochemical standard potential of thymine in aqueous solution was investigated by cyclic voltammetry. The ΔE/ΔpH ≈ -59 mV/pH result is characteristic of proton-coupled electron transfer. This behavior, together with the kinetic analysis, leads to the conclusion that the quenching reactions between triplet BPTC and thymine involve one proton-coupled electron transfer.
DNA, with its building block DNA bases
that store the genetic information, is indispensable in protein biosynthesis.
Investigations on long-distance charge transfer through DNA are of
ongoing interest.[1−4] Moreover, the interaction of excited triplet states of aromatic
carbonyl compounds with DNA bases is also of interest for biophysical
and biochemical studies.[3,5,6] These studies may serve as a useful strategy for understanding structure
and function of the bases in DNA. In the present study, we want to
extend the investigations on the interactions between an aromatic
ketone derivative, 3,3′,4,4′-benzophenone tetracarboxylic
acid, with selected DNA bases.3,3′,4,4′-Benzophenone
tetracarboxylic acid along with 4-benzophenone monocarboxylic acid
(4-BC) are derivatives of benzophenone, and their structures are similar.
To get an idea about the kinetics of triplet BPTC, the previous work
on 4-BC[7−11] should be considered; however, studies on the photochemical reaction
of 4-BC are challenging because of an existing overlap in the spectra
of triplet, ketyl radical, and ketyl radical anion between 380 and
720 nm. Although the overlapped spectra of these radicals with similar
molar extinction coefficients are comparable, the formation of these
radicals also depends on the type of quenchers and radical quantum
yields. Therefore, the various absorptions of the radicals need to
be considered carefully when measuring reaction rate constants. In
our experiments, we have employed different approaches to analyze
these kinetic behaviors.In this paper, we present the kinetics
of the photoreaction of triplet BPTC with various DNA bases in aqueous
solution. The pH-dependence of the quenching reaction rate constants
is investigated thoroughly for all quenchers. In addition, from cyclic
voltammetric measurements, we propose a proton-coupled electron transfer
(PCET) by means of a stepwise mechanism from thymine to triplet BPTC.
Results and Discussion
Before discussing the results,
it is helpful to describe first all relevant calculations. As mentioned
earlier, two kinetic problems arise when analyzing the data obtained
from time-resolved laser flash photolysis: (i) the overlap in the
decay of the excited triplet states and the pseudo-first-order growth
of the corresponding radicals[12] and (ii)
the overlap in the decay of the excited triplet states and the pseudo-first-order
growth of the corresponding radicals and their simultaneous second-order
decay.[13] To deal with these kinetics, we
applied two alternative approaches.According to the low concentrations
of BPTC (1 × 10–4 mol L–1) used, triplet–triplet annihilation is negligible. The interaction
of triplet BPTC with quencher is a pseudo-first-order reaction. Thereupon,
the observed quenching rate constant, kqobs, is obtained
by monitoring the triplet decay of BPTC at fixed wavelengths, applying
the Stern–Volmer relation, eq 1a or eq 1b:Here, kd is the
decay rate constant of triplet BPTC; kqobs is the observed
quenching rate constant. 3τ0 = (1/kd) is the lifetime of triplet BPTC in the absence
of quencher; 3τ = (1/kobs) is actual lifetime of triplet BPTC in the presence of quencher.
[Q] stands for the quencher concentration. Reaction Scheme 1 illustrates the two kinetic problems, where k1 is the first-order growth of radicals,and k2 is the
second-order rate of the disappearance of radicals:
Scheme 1
Two kinetic problems
considered
(i) If the
system shows a combination of parallel reactions, a decay process
and the first-order growth of radicals (pathway I, Scheme 1, denoted here as model I), the following equation
applies:where A0, A, and A∞ are the absorbances
at time 0, t, and infinity, respectively. Using kobs obtained from eq 3 and employing eq 1b with various concentrations
of the quencher gives values of kqobs.(ii) If the system shows a combined decay process,
a first-order growth of radicals and an overlap by their simultaneous
second-order decay (pathway II, Scheme 1, denoted
here as model II), the time-resolved absorbance for the system is
expressed by eq 4andThus, taking k1 obtained from the simulation, eqs 4–6, and applying eq 2 with various
concentrations of the quencher gives the value of kqobs.
pH-Dependence of the Observed Quenching Rate Constant
The observed quenching rate constant is expressed according to the
suggestion of Yurkovskaya et al.,[14] with
the assumption that a polyprotic acid symbolized by HA, initial concentration C0 can undergo n-proton dissociation in water and
form the corresponding base conjugates. Each step has its own dissociation
constant, Ka, j = 1, .., n. The fraction of each species
is given by eq 7,with 0 ≤ j ≤ k; 0 ≤ k ≤ n; Ka0 = 1.For example, for triplet
BPTC, pKa1 = 2.1 and pKa2 = 4.7 (see the text), whereas for thymine, pKa = 9.9.[15] The molar fractions,
depicted in Figure 1, of all species in the
solution are, hence, calculated by eq 7. The
pH-dependence of kqobs for the reaction of triplet BPTC with thymine
is then divided into four regions on the basis of their pKa values and molar fractions:[14]Each pair of reactants is characterized by
the so-called intrinsic quenching rate constant kq (i = 1 ... 4), and
the kqobs can be treated as a summation of kq multiplied by the molar fraction of the
corresponding species according to eq 8. Further
details of this equation can be found in the Supporting
Information.Finally, a multiple regression employed on
eq 8 with known parameters (kqobs, Ka, Ka, [H+]) estimates the intrinsic values, kq.
Figure 1
Molar fractions of BPTC, 3BPTC, and thymine in the solution.
Molar fractions of BPTC, 3BPTC, and thymine in the solution.Similar expressions of the pH-dependence of the
observed quenching rate constants were applied for photochemical reactions
of BPTC with the other quenchers.
Absorption Spectra
Absorption spectra of BPTC recorded
in the absence and in the presence of thymine are shown in Figure 2. It is likely that there is no association between
BPTC and thymine in the ground state, since the spectrum of the mixture
of both shows an addition of their separate spectra. Similar behaviors
are observed with the other quenchers at different pH's.
Figure 2
Absorption spectra of
BPTC (4 × 10–5 mol L–1) without
and with thymine (1.5 × 10–3 mol L–1) in water at pH = 2.0.
By
changing the pH of the solution, it is possible to control which main
reactant species are present in the solution. Therefore, it is important
to know the pKa values. Using UV–vis
spectroscopic measurements, we determined that BPTC has two pKa values: pKa1 =
3.20 ± 0.10 and pKa2 = 5.12 ±
0.10.[16] The fact that only two pKa values are observed implies that there are
two deprotonation steps of BPTC characterized by two-proton dissociation
for each. We suggest the following acid–base equilibria:On the basis of the pKa values and contribution of species (Figure 1, dashed lines), it is unambiguous that eq 9a predominates at pH > 3.2, whereas eq 9b dominates at pH > 5.1. BPTCH22– is the main species present at pH ∼ 4.1.Absorption spectra of
BPTC (4 × 10–5 mol L–1) without
and with thymine (1.5 × 10–3 mol L–1) in water at pH = 2.0.Deprotonated forms of BPTC show absorption spectra
at longer wavelengths compared with its neutral state. BPTCH4 is found to have an absorption maximum at 261 nm (at pH = 2.1),
whereas the spectrum of BPTCH22– is shifted
to 269.5 nm (pH = 4.1). BPTC4– shows a maximum at
276.5 nm (pH = 12.0).
Transient Absorption Spectra
Laser flash photolysis
of BPTC (1 × 10–4 mol L–1) in aqueous solutions at pH = 2.0 and 12.0 gives spectra as Figure 3. They are very similar to the triplet spectra reported
for benzophenone and 4-BC.[7] Triplet BPTC
shows a strong absorption peak at λmax = 590 nm in
water at pH = 2.0, shifting to λmax = 550 nm at pH
= 12.0. Because of these results, we have chosen 590 and 550 nm as
observation wavelengths for kinetic traces of all quenching experiments
in the acidic media and in the basic media, respectively. The decay
of triplet BPTC, observed at both wavelengths λmax = 590 and 550 nm in water follows a first-order kinetics with kd = (5–7) × 105 s–1, in agreement with reported values[17,18] (7.1 × 105 and 6.8 × 105 s–1).
Figure 3
Transient absorption spectra of BPTC (1 × 10–4 mol L–1) in water, monitored by transient absorbances
between 360 and 690 nm obtained right after laser flash.
Transient absorption spectra of BPTC (1 × 10–4 mol L–1) in water, monitored by transient absorbances
between 360 and 690 nm obtained right after laser flash.
Determination of pKa*
Because two pKa values are observed in the ground state, it is expected
that BPTC also behaves in the same way in the excited triplet state.
We estimated the pKa* of triplet BPTC by triplet–triplet
absorbance titration.[19] The pH-dependence
of the absorbance ratio at 590 and 550 nm obtained immediately after
laser flash is shown in Figure 4. The pKa* values for triplet BPTC are determined from the turning points of
this T1 → T absorbance titration curve as pKa1* = 2.1 ±
0.2 and pKa2* = 4.7 ± 0.2. This indicates that triplet
BPTC is a stronger acid in comparison with its ground-state one.
Figure 4
Triplet–triplet
absorbance titration curve of 1 × 10–4 mol
L–1 BPTC in water, monitored by the ratio of transient
absorbances at 590 and 550 nm, obtained right after laser flash. Solid
line: calculation with the pKa* values 2.1 and 4.7.
Triplet–triplet
absorbance titration curve of 1 × 10–4 mol
L–1 BPTC in water, monitored by the ratio of transient
absorbances at 590 and 550 nm, obtained right after laser flash. Solid
line: calculation with the pKa* values 2.1 and 4.7.It is realized in Figure 1 that 3BPTCH4 exits mainly in the solution
of pH < 2.1, whereas its dianionic 3BPTCH22– dominates within 2.1 < pH < 4.7. Note
here that at pH = 3.2, for instance, the light-absorbing species could
be both neutral BPTCH4 and dianionic BPTCH22–, which then generate their corresponding triplet
states. However, 308 nm irradiation of BPTC solutions at pH = 3.2
results in the main species 3BPTCH22– because of the rapid acid–base equilibrium eq 10.Otherwise, at pH > 4.7
the species 3BPTC4– is mainly present
because of the rapid equilibrium eq 11 although
BPTCH22– could be initially excited (e.g.,
at pH = 5.1).
Quenching Experiments of Triplet BPTC
As already pointed
out, all experimental traces for triplet BPTC decay were monitored
at λobs = 590 nm in acid solutions and at λobs = 550 nm in alkaline solutions, respectively. All experimental
data for the measured quenching rate constants were fitted with either
model I or model II.
Quenching by Thymine
Triplet BPTC and thymine can exist
in either neutral or deprotonated forms, depending on the pH of the
solution (see Table 1). In the presence of
thymine, the lifetime of triplet BPTC is decreased, and the long-lived
BPTC ketyl radical anion (BPTC•–) appears,
λmax = 630 nm (see below). The formation of the ketyl
radical anion implies that the photochemical primary step is an electron
transfer. In the range of pH = 2.0–10.0, we found that the
transient kinetics for this system correspond to model II. Data analysis
for this system by model II in the solution of pH = 6.4 is presented
in Figure 5.
Table 1
Quenching Rate Constants of BPTC Triplet
by Quenchers (k)
quencher
pH region
reactant pair
kqi
kqi (mol–1 L s–1)
adenine
pH < 2.1
3BPTCH4 and AdeH2+
kq1
0
2.1 < pH < 4.2
3BPTCH22– and AdeH2+
kq2
8.4 × 109
4.2
< pH < 4.7
3BPTCH22– and AdeH
kq3
2.0 × 109
4.7 < pH < 9.9
3BPTC4– and AdeH
kq4
2.3 × 109
9.9 <
pH
3BPTC4– and Ade–
kq5
4.7 × 108
adenosine
pH < 2.1
3BPTCH4 and dAdeH2+
kq1
4.8 × 109
2.1 < pH < 3.5
3BPTCH22– and dAdeH2+
kq2
6.8 × 109
3.5 < pH < 4.7
3BPTCH22– and dAdeH
kq3
4.0 × 109
4.7 <
pH < 12.5
3BPTC4– and
dAdeH
kq4
6.2 × 108
12.5 < pH
3BPTC4– and dAde–
kq5
4.5 × 107
thymine
pH < 2.1
3BPTCH4 and
ThyH
kq1
3.5 × 109
2.1 < pH < 4.7
3BPTCH22– and ThyH
kq2
2.5 × 109
4.7 <
pH < 9.9
3BPTC4– and
ThyH
kq3
1.0 × 109
9.9 < pH
3BPTC4– andThy–
kq4
0
thymidine
pH < 2.1
3BPTCH4 and dThyH2
kq1
6.6 × 109
2.1 < pH < 4.7
3BPTCH22– and dThyH2
kq2
2.5 × 109
4.7 < pH < 9.8
3BPTC4– and dThyH2
kq3
4.0 × 108
9.8 <
pH < 12.9
3BPTC4– and
dThyH–
kq4
3.1 × 108
12.9 < pH
3BPTC4– and dThy2–
kq5
0a
kq5 =
0 implies that the deprotonation of the deoxyribose group of dThy
do not much influence the overall quenching rate constant.
Figure 5
Decays (λobs = 590 nm) of triplet BPTC
(1 × 10–4 mol L–1) + Thy
(concentration increases from top to bottom: 0–1.5 mM) in water
at pH = 6.4. Experimental, dashed lines; simulation with eq 4, solid lines. Inset: k1 vs [Thy] plot.
It can be seen that the
total radical absorbance is high (Aradical∞/Atriplet0 =
0.29) with [Thy] = 6 × 10–4 mol L–1 (Figure 5) as a result of the high radical
quantum yield of BPTC•– at pH = 6.4. Plotting k1 vs [Thy] at pH = 6.4 (Figure 5, inset) gives a good linearity and zero intercept, showing
that the model accurately describes the kinetic behavior. The spectrum
of BPTC•– over the range of 610–660
nm was obtained by laser flash irradiation of the solution of BPTC
(1.0 × 10–4 mol L–1) and
thymine (1.5 × 10–2 mol L–1) (Figure 6). BPTC•– absorbs at λmax = 630 nm, and the decay monitored
at λobs = 630 nm obeys a second-order kinetics (k2/εBPTC = 3 × 105 cm s–1). In addition,
Inbar et al.[7] reported that the pinacol
yield of the 4-BC•– + 4-BC•– reaction is minor. These lead to the postulation that after an initial
electron transfer followed by proton transfer, ketyl radicals (BPTCH·)
are formed, which dissociate into free radical ions and thereafter
randomly encounter to undergo the pinacol reaction (BPTCH· +
BPTCH·).
Figure 6
BPTC ketyl radical anion spectrum in the presence of thymine
(1.5 × 10–2 mol L–1) at pH
= 2.0. Inset: decay profile (λobs = 630 nm) of BPTC•–, which forms pinacol after the fast protonation
of BPTC•– to BPTCH·.
Decays (λobs = 590 nm) of triplet BPTC
(1 × 10–4 mol L–1) + Thy
(concentration increases from top to bottom: 0–1.5 mM) in water
at pH = 6.4. Experimental, dashed lines; simulation with eq 4, solid lines. Inset: k1 vs [Thy] plot.BPTC ketyl radical anion spectrum in the presence of thymine
(1.5 × 10–2 mol L–1) at pH
= 2.0. Inset: decay profile (λobs = 630 nm) of BPTC•–, which forms pinacol after the fast protonation
of BPTC•– to BPTCH·.On the other hand, the formation of BPTC•– could not be observed at pH = 12.0, even at high concentrations
of thymine ([Thy] = 1.5 × 10–2 mol L–1). This can be explained by the keto–enol tautomerism of Thy– (Scheme 2), which significantly
changes the chemical properties of Thy–. In addition,
it is possible that the proton transfer from the oxidized thymine
is strongly hindered at pH = 12.0 and the electron reverts back to
the thymine molecule instead of remaining on the BPTC. Therefore,
no quenching reaction of triplet BPTC by Thy– occurs
(i.e., in eq 8, kq4 = 0).
Scheme 2
Tautomerism of Thymine at pH > 10
The pH-dependence of the observed quenching
rate constants is presented in Figure 7. Although
the quenching reaction follows a complex reaction system that shows
multiple (de)protonation equilibria in the ground and excited states,
the pH-dependent kqobs is adequately established. Figure 7 depicts a continuous downhill and flat behavior
of kqobs. The decrease in kqobs with pH is characterized by
two changes (at pH ≈ 2.1 and 4.7) which coincide with the two-deprotonation
stages of triplet BPTC. Moreover, kqobs reaches plateaus in the regions,that are attributed to the equilibria of the
corresponding reactant pairs. Note that in the range of pH < pKa, thymine exists in the neutral form (Figure 1, inset) and triplet BPTC shows two steps of deprotonation
(pKa1* = 2.1 and pKa2* = 4.7). Therefore, it allows the prediction
of the chemical reactivity between triplet BPTC and thymine in the
orderPerhaps, for a more negative net charge, the
reduction is more difficult and the quenching rate constant becomes
lower.
Figure 7
pH-dependence of the observed quenching rate constant for the reaction
of triplet BPTC with thymine. The solid line is the simulation according
to eq 8 with kq4 = 0. See Table 1 for parameters.
kq5 =
0 implies that the deprotonation of the deoxyribose group of dThy
do not much influence the overall quenching rate constant.pH-dependence of the observed quenching rate constant for the reaction
of triplet BPTC with thymine. The solid line is the simulation according
to eq 8 with kq4 = 0. See Table 1 for parameters.
Quenching by Thymidine
Within the pH range of 2.0–12.0,
the decay of triplet BPTC in the presence of dThy obeys model I. The
appearance of the long-lived transient (BPTC•–) at λobs = 630 nm is observed, which then decays
according to a second-order kinetics on the milliseconds time scale.
This is interpreted by an electron transfer mechanism from dThy to
triplet BPTC, forming the radical pair followed by fast escape of
these radical ions from the charge-transfer successor complex. Thereafter,
depending on pH of the solution, the pinacol reactions, BPTCH·
+ BPTCH·, BPTCH· + BPTC•–, or BPTC•–+BPTC•– occur. Note
that unlike thymine, a keto–enol tautomerism is no longer achieved
due to the deoxyribose group of thymidine.The pH-dependence
of kqobs can be expressed by eq 12 and is
presented in Figure 8 (see Tables 1 and 2 for parameters).The main reactions at each pH region and their
corresponding quenching rate constants, kq, obtained by the best fit (solid line, Figure 8), are summarized in Table 1. Note also that kq5 = 0 implies that
the deprotonation of the deoxyribose group (pKa = 12.9) of dThy does not much influence the overall quenching
rate constant. Therefore, a similar explanation, such as the quenching
reaction by thymine for pH < 10, is given for the variation of kqobs with pH. A further decrease in kqobs at pH > 10 is caused by
the shift of the dThyH2 equilibrium toward its anionic form. An effect
of Coulombic repulsion may hinder the encounter of 3BPTC4– and result in dThyH–; hence, the
quenching rate constants get smaller.
Figure 8
pH-dependence of the observed quenching rate constant for the reaction
of triplet BPTC with dThy. Solid line is a simulation from eq 12.
Table 2
List of Compounds
For the triplet state.
Ref (15).
Ref (24).
Quenching by Adenine
The reactive species existing
in solution at different pH's are shown in Table 1. For the whole range of pH = 2.0–12.0, we found that
the decay of triplet BPTC in the presence of Ade follows model I with
the formation of BPTC•–. The appearance of
transient BPTC•– leads to the conclusion
that an electron transfer reaction from Ade to triplet BPTC is followed
by fast diffusion of the reactants.The pH-dependence of kqobs is described by eq 13 and is presented in
Figure 9 (see Tables 1 and 2 for parameters).It is seen that kq1 = 0, which implies no quenching reaction of triplet BPTC by AdeH2+ under strong acidic conditions (pH < 2). Figure 9 shows a maximum of kqobs at pH ≈
2.8. The increase in kqobs up to pH ≈ 2.8 can be explained
by a shift of the triplet BPTC equilibrium toward its dianionic form,[20] eq 10. The main reactant
pair within 2.1 < pH < 4.2 is 3BPTCH22– + AdeH2+. Thus, the maximum
quenching rate constant here can be attributed to the molecular net
charge of the reactants (Coulombic interaction). The further decrease
in kqobs at pH ≈ 2.8–5 is caused by a drop in the
AdeH2+ concentration following the equilibrium
as eq 14:At pH > 5, an explanation similar to that
of the quenching reaction by thymidine for the change of kqobs with pH
is used.
Figure 9
pH-dependence of the observed quenching rate constant
for the reaction of triplet BPTC with dAde. The solid line is a simulation
from eq 13.
pH-dependence of the observed quenching rate constant for the reaction
of triplet BPTC with dThy. Solid line is a simulation from eq 12.pH-dependence of the observed quenching rate constant
for the reaction of triplet BPTC with dAde. The solid line is a simulation
from eq 13.
Quenching by Adenosine
The decay profile and kinetic
analysis for the quenching of triplet BPTC by dAde at pH = 4.0 is
shown in Figure 10. It can be seen that the
total radical absorbance increases slightly with the concentration
of dAde. Kinetic treatment by model I within the range of pH = 2.0–12.0
is applied. Together with the observation of BPTC•– at λobs = 630 nm, it leads to the conclusion that
electron transfer from dAde to triplet BPTC occurs, followed by a
fast diffusion step. The pH-dependence of kqobs is expressed
by eq 13 (see Tables 1 and 2 for parameters). Values obtained from
the best fit (solid line, Figure 11) are summarized
in Table 1. Once again, an explanation similar
to that of the quenching reaction by adenine for the variation of kqobs with pH is used.
Figure 10
Decay profiles (λobs = 590 nm) for the
BPTC + dAde system in water at pH = 4.0. Concentration of dA increases
from top to bottom: 0–0.12 mM. Inset: Stern–Volmer plot
from eqs 3 and 1b.
Figure 11
pH-dependence of kqobs for the reaction of triplet
BPTC with dAde. The solid line is a simulation from eq 13.
Decay profiles (λobs = 590 nm) for the
BPTC + dAde system in water at pH = 4.0. Concentration of dA increases
from top to bottom: 0–0.12 mM. Inset: Stern–Volmer plot
from eqs 3 and 1b.pH-dependence of kqobs for the reaction of triplet
BPTC with dAde. The solid line is a simulation from eq 13.
Cyclic Voltammetric Investigation
One question remains
that is related to the quenching reactions of triplet BPTC by thymine
at pH = 2.0–10: Is electron transfer followed by proton transfer?
To check the possibility, we have investigated the pH-dependence of
the oxidation potential of thymine by cyclic voltammetry. Whatever
the reaction mechanism may be, a global Nernst equation can be applied
for the thermodynamics of the redox reaction:[21]Here, E is the electrode
potential; Eap0,ox is the apparent standard
oxidation potential of the corresponding redox couple; and ∑[ox]
and ∑[red] are the total concentrations of the oxidized and
reduced species in solution, respectively. Therefore, the pH-dependence
of Eap0 for the oxidation of thymine can be described by eq 16 (see the Supporting Information), as shown in Figure 12.Here, pK = 3.2 is the dissociation constant
of thymine radical cation.[22]
Figure 12
The apparent
oxidation potential vs Ag/AgCl of thymine (1 mM) as a function of
pH. Solid line: linear fitting with a slope of −55.2 mV/pH.
The apparent
oxidation potential vs Ag/AgCl of thymine (1 mM) as a function of
pH. Solid line: linear fitting with a slope of −55.2 mV/pH.Between pH = 2–8, Eap0 shows a linear
variation with pH, together with the characteristic slope of approximately
−59 mV per pH unit. This indicates a one-proton-coupled one-electron
transfer during the oxidation of thymine.[23] This observation and the above kinetic analysis of the quenching
reaction by thymine suggest that the possible pathway of the quenching
reaction of triplet BPTC by thymine at pH around 2–8 is initially
an electron transfer, followed by proton transfer (Scheme 3). At pH around 8–10, a simple electron transfer
mechanism might take place in competition.
Scheme 3
Quenching Reaction
of Triplet BPTC by Thymine
Conclusion
The quenching of the triplet state of 3,3′,4,4′-benzophenone
tetracarboxylic acid by DNA bases in aqueous solution was investigated
using time-resolved laser flash photolysis. The observation of the
BPTC ketyl radical anion (λmax = 630 nm) confirms
that the primary photochemical step is electron transfer. Although
the forms of the triplet BPTC and quenchers depend on the pH of the
solution, we have been able to establish a relationship of the quenching
rate constant of each pair of reactants with the overall quenching
rate constant.Particularly, the pH-dependence of the apparent
standard potential of thymine in aqueous solution was investigated
by cyclic voltammetry. From the kinetic analysis of the quenching
reactions, the pH-dependent oxidation potential of thymine indicates
that proton-coupled electron transfer by means of a stepwise mechanism
from thymine to triplet BPTC in the solutions of pH ≈ 2–8
proceeds. In the strong basic solution (pH = 12.0), no quenching reaction
between triplet BPTC and thymine takes place, whereas it is observed
for thymidine. This can be explained by a keto–enol tautomerism,
which changes the chemical properties of thymine. Such a tautomerism
is not possible for thymidine because of its deoxyribose group.
Experimental Section
Materials
The abbreviations used in this article can
be found in the section Results and Discussion. 3,3′,4,4′-Benzophenone tetracarboxylic acid is a
generous gift from Dr. Y. Lin, Chemistry Department, Chinese Academy
of Science, Beijing and was used without further purification. DNA
bases adenine (99%), adenosine (99%), thymine (97%), and thymidine
(99%), purchased from Alfa-Aesar, were also used as received.All experiments were carried out at room temperature in buffered
aqueous solutions. The buffer solutions (0.01 mol L–1) employed, covering the pH range from 3.0 to 11.0 with (a) HCl–KH2PO4, pH = 3.0–5.0; (b) KH2PO4–Na2HPO4, pH = 5.0–9.0;
(c) Na2HPO4–NaOH, pH = 9.0–11.0,
pH = 2.0 and pH = 12.0, were adjusted with HCl and NaOH, respectively.
The pH value was checked with a WTW-522 pH meter. Double distilled
water was used to prepare the samples.
Spectroscopic Methods
Absorption spectra were recorded
with a Shimadzu UV-3101-PC spectrometer. Transient absorption spectra
were obtained by time-resolved laser spectroscopy using a Lambda Physik
LPX-120 XeCl excimer laser (308 nm, pulse energy up to 100 mJ, pulse
width 10 ns). The monitoring system included a 150 W xenon lamp; a
Hamamatsu R928 photomultiplier tube; a OBB/PTI monochromator, model
101/102; and a digital storage oscilloscope, 9410A LeCroy. The irradiation
was carried out in a 1 × 1 cm2 rectangular quartz
cell. All solutions were treated identically and deoxygenated by bubbling
with high-purity argon for 15 min.
Cyclic Voltammetry
Cyclic voltammetric measurements
were performed with an Autolab-PGES AUT 73227 potentiostat (Metrohm).
A three-electrode cell configuration was used: a Pt counter electrode,
a Ag/AgCl reference electrode, and a glassy carbon working electrode
(0.03 cm2 area). The working electrode was polished with
diamond paste in water after each single scan to remove possible follow-up
products of the oxidative process on the electrode surface. The background
current was always subtracted from the current response for further
calculation.For the triplet state.Ref (15).Ref (24).
Authors: Natalya N Saprygina; Olga B Morozova; Tatyana V Abramova; Günter Grampp; Alexandra V Yurkovskaya Journal: J Phys Chem A Date: 2014-06-25 Impact factor: 2.781
Authors: Tatyana V Abramova; Olga B Morozova; Vladimir N Silnikov; Alexandra V Yurkovskaya Journal: Beilstein J Org Chem Date: 2013-12-18 Impact factor: 2.883