Literature DB >> 23032369

Divergent lymphocyte signalling revealed by a powerful new tool for analysis of time-lapse microscopy.

Kim Pham1, Raz Shimoni, Mandy J Ludford-Menting, Cameron J Nowell, Pavel Lobachevsky, Ze'ev Bomzon, Min Gu, Terence P Speed, C Jane McGlade, Sarah M Russell.   

Abstract

We describe a new approach for interactive analysis of time-lapse microscopy, and apply this approach to elucidating whether polarity regulation is conserved between epithelial cells and lymphocytes. A key advantage of our analysis platform, 'TACTICS', is the capacity to visualize individual data points in the context of large data sets, similar to standard approaches in flow cytometry. Scatter plots representing microscopic parameters or their derivations such as polarity ratios are linked to the original data such that clicking on each dot enables a link to images and movies of the corresponding cell. Similar to flow cytometric analysis, subsets of the data can be gated and reanalyzed to explore the relationships between different parameters. TACTICS was used to dissect the regulation of polarization of the cell fate determinant, Numb, in migrating lymphocytes. We show here that residues of Numb that are phosphorylated by atypical protein kinase C (aPKC) to mediate apicobasal polarity in epithelial cells are not required for polarization of Numb in T cells, indicating that the role of aPKC is not conserved between lymphocytes and epithelia.

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Year:  2012        PMID: 23032369     DOI: 10.1038/icb.2012.49

Source DB:  PubMed          Journal:  Immunol Cell Biol        ISSN: 0818-9641            Impact factor:   5.126


  9 in total

Review 1.  Clonal expansion under the microscope: studying lymphocyte activation and differentiation using live-cell imaging.

Authors:  Michal Polonsky; Benjamin Chain; Nir Friedman
Journal:  Immunol Cell Biol       Date:  2015-12-22       Impact factor: 5.126

2.  Automated profiling of individual cell-cell interactions from high-throughput time-lapse imaging microscopy in nanowell grids (TIMING).

Authors:  Amine Merouane; Nicolas Rey-Villamizar; Yanbin Lu; Ivan Liadi; Gabrielle Romain; Jennifer Lu; Harjeet Singh; Laurence J N Cooper; Navin Varadarajan; Badrinath Roysam
Journal:  Bioinformatics       Date:  2015-06-09       Impact factor: 6.937

Review 3.  The functional contribution of calcium ion flux heterogeneity in T cells.

Authors:  Susan N Christo; Kerrilyn R Diener; John D Hayball
Journal:  Immunol Cell Biol       Date:  2015-03-31       Impact factor: 5.126

4.  Integrative analysis of T cell motility from multi-channel microscopy data using TIAM.

Authors:  Viveka Mayya; Willie Neiswanger; Ricardo Medina; Chris H Wiggins; Michael L Dustin
Journal:  J Immunol Methods       Date:  2014-11-13       Impact factor: 2.303

5.  Asymmetric cell division during T cell development controls downstream fate.

Authors:  Kim Pham; Raz Shimoni; Mirren Charnley; Mandy J Ludford-Menting; Edwin D Hawkins; Kelly Ramsbottom; Jane Oliaro; David Izon; Stephen B Ting; Joseph Reynolds; Grant Lythe; Carmen Molina-Paris; Heather Melichar; Ellen Robey; Patrick O Humbert; Min Gu; Sarah M Russell
Journal:  J Cell Biol       Date:  2015-09-14       Impact factor: 10.539

6.  Numb-dependent integration of pre-TCR and p53 function in T-cell precursor development.

Authors:  N M Martin-Blanco; S Checquolo; F Del Gaudio; R Palermo; G Franciosa; L Di Marcotullio; A Gulino; M Canelles; I Screpanti
Journal:  Cell Death Dis       Date:  2014-10-16       Impact factor: 8.469

Review 7.  Polarized cells, polarized views: asymmetric cell division in hematopoietic cells.

Authors:  Kim Pham; Faruk Sacirbegovic; Sarah M Russell
Journal:  Front Immunol       Date:  2014-02-03       Impact factor: 7.561

8.  Normalized polarization ratios for the analysis of cell polarity.

Authors:  Raz Shimoni; Kim Pham; Mohammed Yassin; Mandy J Ludford-Menting; Min Gu; Sarah M Russell
Journal:  PLoS One       Date:  2014-06-25       Impact factor: 3.240

9.  Explosive cell lysis as a mechanism for the biogenesis of bacterial membrane vesicles and biofilms.

Authors:  Lynne Turnbull; Masanori Toyofuku; Amelia L Hynen; Masaharu Kurosawa; Gabriella Pessi; Nicola K Petty; Sarah R Osvath; Gerardo Cárcamo-Oyarce; Erin S Gloag; Raz Shimoni; Ulrich Omasits; Satoshi Ito; Xinhui Yap; Leigh G Monahan; Rosalia Cavaliere; Christian H Ahrens; Ian G Charles; Nobuhiko Nomura; Leo Eberl; Cynthia B Whitchurch
Journal:  Nat Commun       Date:  2016-04-14       Impact factor: 14.919

  9 in total

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