Literature DB >> 23032097

Site-specific functionalization of RNA molecules by an unnatural base pair transcription system via click chemistry.

Takumi Ishizuka1, Michiko Kimoto, Akira Sato, Ichiro Hirao.   

Abstract

Toward new biotechnology by genetic alphabet expansion, we developed an efficient site-specific labeling method for large RNA molecules. The combination of unnatural base pair transcription and post-transcriptional modification by click chemistry enables simple RNA labeling with a wide variety of functional groups at desired positions, in a one-pot reaction.

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Year:  2012        PMID: 23032097     DOI: 10.1039/c2cc36293g

Source DB:  PubMed          Journal:  Chem Commun (Camb)        ISSN: 1359-7345            Impact factor:   6.222


  12 in total

1.  Site-specifically arraying small molecules or proteins on DNA using an expanded genetic alphabet.

Authors:  Zhengtao Li; Thomas Lavergne; Denis A Malyshev; Jörg Zimmermann; Ramkrishna Adhikary; Kirandeep Dhami; Phillip Ordoukhanian; Zhelin Sun; Jie Xiang; Floyd E Romesberg
Journal:  Chemistry       Date:  2013-09-11       Impact factor: 5.236

Review 2.  Covalent labeling of nucleic acids.

Authors:  Nils Klöcker; Florian P Weissenboeck; Andrea Rentmeister
Journal:  Chem Soc Rev       Date:  2020-10-21       Impact factor: 54.564

Review 3.  The expanded genetic alphabet.

Authors:  Denis A Malyshev; Floyd E Romesberg
Journal:  Angew Chem Int Ed Engl       Date:  2015-08-25       Impact factor: 15.336

4.  FRET Characterization of Complex Conformational Changes in a Large 16S Ribosomal RNA Fragment Site-Specifically Labeled Using Unnatural Base Pairs.

Authors:  Thomas Lavergne; Rajan Lamichhane; Denis A Malyshev; Zhengtao Li; Lingjun Li; Edit Sperling; James R Williamson; David P Millar; Floyd E Romesberg
Journal:  ACS Chem Biol       Date:  2016-03-04       Impact factor: 5.100

5.  Bioorthogonal chemistry-based RNA labeling technologies: evolution and current state.

Authors:  Jerrin Thomas George; Seergazhi G Srivatsan
Journal:  Chem Commun (Camb)       Date:  2020-10-07       Impact factor: 6.222

6.  Vinyluridine as a Versatile Chemoselective Handle for the Post-transcriptional Chemical Functionalization of RNA.

Authors:  Jerrin Thomas George; Seergazhi G Srivatsan
Journal:  Bioconjug Chem       Date:  2017-04-26       Impact factor: 4.774

7.  Site-specific labeling of RNA by combining genetic alphabet expansion transcription and copper-free click chemistry.

Authors:  Tatsuhiko Someya; Ami Ando; Michiko Kimoto; Ichiro Hirao
Journal:  Nucleic Acids Res       Date:  2015-06-29       Impact factor: 16.971

8.  A two-stage mechanism of viral RNA compaction revealed by single molecule fluorescence.

Authors:  Alexander Borodavka; Roman Tuma; Peter G Stockley
Journal:  RNA Biol       Date:  2013-02-19       Impact factor: 4.652

9.  Influence of major-groove chemical modifications of DNA on transcription by bacterial RNA polymerases.

Authors:  Veronika Raindlová; Martina Janoušková; Michaela Slavíčková; Pavla Perlíková; Soňa Boháčová; Nemanja Milisavljevič; Hana Šanderová; Martin Benda; Ivan Barvík; Libor Krásný; Michal Hocek
Journal:  Nucleic Acids Res       Date:  2016-03-21       Impact factor: 16.971

10.  A versatile toolbox for posttranscriptional chemical labeling and imaging of RNA.

Authors:  Anupam A Sawant; Arun A Tanpure; Progya P Mukherjee; Soumitra Athavale; Ashwin Kelkar; Sanjeev Galande; Seergazhi G Srivatsan
Journal:  Nucleic Acids Res       Date:  2015-09-17       Impact factor: 16.971

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