Literature DB >> 23030940

Macroscopic limits of individual-based models for motile cell populations with volume exclusion.

Louise Dyson1, Philip K Maini, Ruth E Baker.   

Abstract

Partial differential equation models are ubiquitous in studies of motile cell populations, giving a phenomenological description of events which can be analyzed and simulated using a wide range of existing tools. However, these models are seldom derived from individual cell behaviors and so it is difficult to accurately include biological hypotheses on this spatial scale. Moreover, studies which do attempt to link individual- and population-level behavior generally employ lattice-based frameworks in which the artifacts of lattice choice at the population level are unclear. In this work we derive limiting population-level descriptions of a motile cell population from an off-lattice, individual-based model (IBM) and investigate the effects of volume exclusion on the population-level dynamics. While motility with excluded volume in on-lattice IBMs can be accurately described by Fickian diffusion, we demonstrate that this is not the case off lattice. We show that the balance between two key parameters in the IBM (the distance moved in one step and the radius of an individual) determines whether volume exclusion results in enhanced or slowed diffusion. The magnitude of this effect is shown to increase with the number of cells and the rate of their movement. The method we describe is extendable to higher-dimensional and more complex systems and thereby provides a framework for deriving biologically realistic, continuum descriptions of motile populations.

Mesh:

Year:  2012        PMID: 23030940     DOI: 10.1103/PhysRevE.86.031903

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  8 in total

1.  Spatial moment dynamics for collective cell movement incorporating a neighbour-dependent directional bias.

Authors:  Rachelle N Binny; Michael J Plank; Alex James
Journal:  J R Soc Interface       Date:  2015-05-06       Impact factor: 4.118

2.  Bridging the gap between individual-based and continuum models of growing cell populations.

Authors:  Mark A J Chaplain; Tommaso Lorenzi; Fiona R Macfarlane
Journal:  J Math Biol       Date:  2019-06-10       Impact factor: 2.259

3.  The importance of volume exclusion in modelling cellular migration.

Authors:  Louise Dyson; Ruth E Baker
Journal:  J Math Biol       Date:  2014-09-28       Impact factor: 2.259

4.  From a discrete model of chemotaxis with volume-filling to a generalized Patlak-Keller-Segel model.

Authors:  Federica Bubba; Tommaso Lorenzi; Fiona R Macfarlane
Journal:  Proc Math Phys Eng Sci       Date:  2020-05-13       Impact factor: 2.704

Review 5.  Multidisciplinary approaches to understanding collective cell migration in developmental biology.

Authors:  Linus J Schumacher; Paul M Kulesa; Rebecca McLennan; Ruth E Baker; Philip K Maini
Journal:  Open Biol       Date:  2016-06       Impact factor: 6.411

6.  Melanoma Cell Colony Expansion Parameters Revealed by Approximate Bayesian Computation.

Authors:  Brenda N Vo; Christopher C Drovandi; Anthony N Pettitt; Graeme J Pettet
Journal:  PLoS Comput Biol       Date:  2015-12-07       Impact factor: 4.475

7.  A cell-centered, agent-based framework that enables flexible environment granularities.

Authors:  Ryan C Kennedy; Glen Ep Ropella; C Anthony Hunt
Journal:  Theor Biol Med Model       Date:  2016-02-02       Impact factor: 2.432

8.  Modelling collective cell migration: neural crest as a model paradigm.

Authors:  Rasa Giniūnaitė; Ruth E Baker; Paul M Kulesa; Philip K Maini
Journal:  J Math Biol       Date:  2019-10-05       Impact factor: 2.259

  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.