Literature DB >> 23030062

Continuous enzyme-coupled assay of phosphate- or pyrophosphate-releasing enzymes.

Antonio S Guillén Suárez1, Alessandra Stefan, Silvia Lemma, Emanuele Conte, Alejandro Hochkoeppler.   

Abstract

A coupled enzyme assay able to monitor the kinetics of reactions catalyzed by phosphate- or pyrophosphate-releasing enzymes is presented here. The assay is based on the concerted action of inorganic pyrophosphatase (PPase), purine nucleoside phosphorylase (PNPase), and xanthine oxidase (XOD). In the presence of phosphate, PNPase catalyzes the phosphorolysis of inosine, generating hypoxanthine, which is oxidized to uric acid by XOD. The uric acid accordingly formed can be spectrophotometrically monitored at 293 nm, taking advantage of a molar extinction coefficient which is independent of pH between 6 and 9. The coupled assay was tested using DNA polymerases as a model system. The activity of Klenow enzyme was quantitatively determined, and it was found in agreement with the corresponding activity determined by traditional methods. Moreover, the continuous coupled assay was used to determine Km and Vmax of Klenow enzyme, yielding values in good agreement with previous observations. Finally, the coupled assay was also used to determine the activity of partially purified DNA polymerases, revealing its potential use to monitor purification of phosphate- or pyrophosphate-releasing enzymes.

Entities:  

Mesh:

Substances:

Year:  2012        PMID: 23030062     DOI: 10.2144/000113905

Source DB:  PubMed          Journal:  Biotechniques        ISSN: 0736-6205            Impact factor:   1.993


  9 in total

1.  The multifaceted benefits of protein co-expression in Escherichia coli.

Authors:  Alessandra Stefan; Alessandro Ceccarelli; Emanuele Conte; Alejandro Montón Silva; Alejandro Hochkoeppler
Journal:  J Vis Exp       Date:  2015-02-05       Impact factor: 1.355

2.  A continuous spectrophotometric enzyme-coupled assay for deoxynucleoside triphosphate triphosphohydrolases.

Authors:  Deepa Singh; Roel M Schaaper; Alejandro Hochkoeppler
Journal:  Anal Biochem       Date:  2015-12-23       Impact factor: 3.365

3.  The thumb domain is not essential for the catalytic action of HoLaMa DNA polymerase.

Authors:  Angela Gala Morena Gatius; Fabrizio Dal Piaz; Alejandro Hochkoeppler
Journal:  Protein J       Date:  2017-12       Impact factor: 2.371

4.  Controlling Enzymatic Activity by Modulating the Oligomerization State via Chemical Rescue and Optical Control.

Authors:  Cosimo Kropp; Astrid Bruckmann; Patrick Babinger
Journal:  Chembiochem       Date:  2021-10-22       Impact factor: 3.461

5.  Escherichia coli DnaE Polymerase Couples Pyrophosphatase Activity to DNA Replication.

Authors:  Fabio Lapenta; Alejandro Montón Silva; Renato Brandimarti; Massimiliano Lanzi; Fabio Lino Gratani; Perceval Vellosillo Gonzalez; Sofia Perticarari; Alejandro Hochkoeppler
Journal:  PLoS One       Date:  2016-04-06       Impact factor: 3.240

6.  The DnaE polymerase from Deinococcus radiodurans features RecA-dependent DNA polymerase activity.

Authors:  Lorenzo Randi; Alessandro Perrone; Mirko Maturi; Fabrizio Dal Piaz; Michela Camerani; Alejandro Hochkoeppler
Journal:  Biosci Rep       Date:  2016-12-05       Impact factor: 3.840

7.  Structural and catalytic insights into HoLaMa, a derivative of Klenow DNA polymerase lacking the proofreading domain.

Authors:  Michael Kovermann; Alessandra Stefan; Anna Castaldo; Sara Caramia; Alejandro Hochkoeppler
Journal:  PLoS One       Date:  2019-04-10       Impact factor: 3.240

8.  A continuous assay for monitoring the synthetic and proofreading activities of multiple aminoacyl-tRNA synthetases for high-throughput drug discovery.

Authors:  Christopher D Grube; Hervé Roy
Journal:  RNA Biol       Date:  2017-12-15       Impact factor: 4.652

Review 9.  Discovery and Biotechnological Exploitation of Glycoside-Phosphorylases.

Authors:  Ao Li; Mounir Benkoulouche; Simon Ladeveze; Julien Durand; Gianluca Cioci; Elisabeth Laville; Gabrielle Potocki-Veronese
Journal:  Int J Mol Sci       Date:  2022-03-11       Impact factor: 5.923

  9 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.