| Literature DB >> 23029188 |
Zhifang Jia1, Yanhua Ding, Suyan Tian, Junqi Niu, Jing Jiang.
Abstract
BACKGROUND: Many studies have been published on the association between single nucleotide polymorphisms (SNP) near the IL28B gene and response to the combined treatments of pegylated-interferon (PegIFN) and ribavirin (RBV) in chronic HCV-infected patients, but without identical conclusions. The aim of this study was to assess impact of the IL28B polymorphisms on the effect of HCV standard treatment using meta-analysis based method.Entities:
Mesh:
Substances:
Year: 2012 PMID: 23029188 PMCID: PMC3448689 DOI: 10.1371/journal.pone.0045698
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Figure 1Flow chart summarizing the process of study selection.
Information of studies included in the Meta-analysis.
| No | Author | Publishing date | Region | Race | Genotype | Treatment duration | Gender (% for male) | Age | SVR | Total |
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| 1 | Ge et al | Aug-09 | USA | African | 1 | 48W | 62.8% | 50.1±6.5 | 45 | 191 |
| 2 | Caucasian | 1 | 48W | 62.0% | 47.5±7.2 | 488 | 871 | |||
| 3 | Hispanic | 1 | 48W | 61.3% | 45.3±9.2 | 38 | 75 | |||
| 4 | Hayes et al | Nov-10 | Japan | Asian | 1b | 48W | 56.5% | 58(51–65) | 366 | 812 |
| 5 | Kawaoka et al | Sep-10 | Japan | Asian | 2 | 24W | N/A | N/A | 99 | 130 |
| 6 | Kurosaki et al | Sep-10 | Japan | Asian | 1b | ≥24W | 50.4% | 57.1±9.9 | 194 | 496 |
| 7 | Mangia et al | Jun-10 | Italy | Caucasian | 2/3 | 12/24W | 57.8% | ≥40:77.6% | 201 | 268 |
| 8 | Scherzer et al | Jan-11 | Austria | Caucasian | 3 | 24W | 63.9% | 36.2±9.3 | 53 | 69 |
| 9 | Yu et al | Jan-11 | Taiwan | Asian | 2 | 24W | 54.8% | 52.8±11.1 | 429 | 482 |
| 10 | Moghaddam et al | Mar-11 | Norway,Denmark | Caucasian | 3 | 14–24W | 59.1% | >40:39.5% | 226 | 281 |
| 11 | Fattovich et al | Mar-11 | Italy | Caucasian | 1 | 48W | 64.5% | 46±11 | 65 | 121 |
| 12 | Caucasian | 2/3 | 24W | 55.3% | 46±11 | 144 | 159 | |||
| 13 | Lin et al | Mar-11 | Taiwan | Asian | 1 | 24W | 64.4% | 51.4±11.1 | 131 | 191 |
| 14 | Bitetto et al | Apr-11 | Italy | Caucasian | 1/4/5 | 48W | 51.7% | 47 (18–77) | 47 | 110 |
| 15 | Caucasian | 2/3 | 24W | 87 | 101 | |||||
| 16 | Lindh et al | Jun-11 | Denmark, Finland, Norway and Sweden | Caucasian | 2/3 | 12/24W | 59.8% | 42 (20–72) | 237 | 341 |
| 17 | Mangia et al | May-11 | Italy | Caucasian | 1 | 24/48/72W | 57.7% | 50.2 | 230 | 454 |
| 18 | de Rueda et al | Jun-11 | Spain | Caucasian | 1/4 | 48W | 58.2% | >40:61.9% | 198 | 373 |
| 19 | Caucasian | 2/3 | 48W | 41 | 50 | |||||
| 20 | Ladero et al | Jun-11 | Spain | Caucasian | 1 | 48W | 62.7% | 48 (20–74) | 51 | 110 |
| 21 | Sarrazin et al | Jul-11 | Germany | Caucasian | 1 | 24–72W | 55.2% | 43 (18–73) | 291 | 542 |
| 22 | Suppiah et al | Sep-11 | Australia | Caucasian | 1 | 48W | 62.5% | SVR:40.9±10.8;N-SVR:45.7±9.3 | 389 | 848 |
| 23 | Sandra et al | Sep-11 | Austria | Caucasian | 1 | 48W | 55.0% | 46.4±12.2 | 51 | 113 |
| 24 | De Nicola et al | Sep-11 | Italy | Caucasian | 4 | 48W | 83.6% | 46 (27–63) | 50 | 103 |
| 25 | Howell et al | Oct-11 | USA | African | 1 | 48W | 53.8% | 49.0±7.0 | 45 | 173 |
| 26 | Caucasian | 1 | 48W | 60.6% | 47.2±8.5 | 101 | 188 | |||
| 27 | Umemura et al | Jul-11 | Japan | Asian | 1 | 48W | 46.2% | 58 (17–74) | 22 | 52 |
| 28 | Scherzer et al | Nov-11 | Austria | Caucasian | 1/4 | 24/48/72W | 64.7% | 44.4±10.8 | 182 | 328 |
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| 29 | Miyaaki et al | Nov-11 | Japan | Asian | 1b | 48W | 55.2% | 56.8±9.3 | 29 | 67 |
| 30 | Lindh et al | Nov-10 | Sweden | Caucasian | 1 | 24–72W | 60.9% | 45.4 | 63 | 106 |
| 31 | Hayashi et al | Jun-11 | Japan | Asian | 1b | 48W | 52.5% | 55.9±10.3 | 138 | 299 |
| 32 | Halfon et al | Oct-11 | Israel | Caucasian | 1 | 48W | 70.7% | 47±12 | 77 | 156 |
| 33 | Caucasian | 2/3 | 24W | 31 | 42 | |||||
| 34 | Lyoo et al | Sep-11 | South Korea | Asian | 1 | 48W | 56.9% | 52.4±9.7 | 42 | 65 |
| 35 | Sakamoto et al | Feb-11 | Japan | Asian | 2 | 24W | 49.6% | 64 (20–73) | 98 | 129 |
| 36 | Sinn et al | Mar-11 | Korea | Asian | 1 | 48W | 53.4% | 56.6±9.2 | 35 | 55 |
| 37 | Asian | 2 | 24W | 52 | 63 | |||||
| 38 | O'Brien et al | Jul-11 | USA | Caucasian | 1 | 48W | 75.4% | 49 (45–53) | 92 | 646 |
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| 39 | Pineda et al | Sep-10 | Spain | Caucasian | 1/4 | 48W | 84.4% | 42 (38–44) | 33 | 103 |
| 40 | Caucasian | 2/3 | 24/48W | 44 | 51 | |||||
| 41 | Aparicio et al | Oct-10 | Spain | Caucasian | 1/4 | N/A | 66.9% | SVR:48.4±0.7; Non-SVR:47.2±0.6 | 38 | 114 |
| 42 | Caucasian | 3 | 29 | 46 | ||||||
| 43 | Rallón et al | Apr-11 | Spain | Caucasian | 1/4 | 48/72W | 75.0% | 42 (38–45) | 57 | 135 |
| 44 | Caucasian | 2/3 | 24/48W | 47 | 60 | |||||
| 45 | Labarga et al | May-11 | Spain | Caucasian | 1/4 | 48W | 82.3% | 43 | 12 | 47 |
| 46 | Caucasian | 2/3 | 48W | 13 | 15 | |||||
Age were described as
mean ± standard deviation,
median (interquartile range),
median (range) and
mean age.
N/A: not available.
Figure 2Forrest plots for association between polymorphisms and response to PegIFN/RBV in treatment-naïve HCV G1/4 patients.
A. rs12979860 (CC vs CT/TT). B. rs8099917 (TT vs TG/GG).
Figure 3Forrest plots for association between polymorphisms and response to PegIFN/RBV in treatment-naïve HCV G2/3 patients.
A. rs12979860 (CC vs CT/TT). B. rs8099917 (TT vs TG/GG).
SVR rates and frequency for rs12979860 genotypes in Caucasian treatment-naïve patients with complete data.
| Reference | CC | CT | TT | |
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| G1/4 (51.2%) |
| 72.7% (793/1090) | 41.6% (684/1646) | 34.4% (156/454) |
| G2/3 (77.8%) |
| 78.3% (403/515) | 78.6% (453/576) | 71.9% (92/128) |
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| G1/4 |
| 34.2% (1090/3190) | 51.6% (1646/3190) | 14.2% (454/3190) |
| G2/3 |
| 42.2% (515/1219) | 47.3% (576/1219) | 10.5% (128/1219) |
Figure 4Forrest plots for association between polymorphisms and response to PegIFN/RBV in patients possibly with treatment history.
A. rs12979860 (CC vs CT/TT). B. rs8099917 (TT vs TG/GG).
Figure 5Forrest plot for association between rs12979860 polymorphisms and response to PegIFN/RBV in HIV co-infected patients.
Results for publication bias test using Egger's test and Peters' test.
| Group |
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| HCV G1/4 and treatment- naïve patient | 0.310 | 0.286 |
| HCV G2/3 and treatment- naïve patient | 0.889 | 0.946 |
| Patients with unsuccessful or unknown treatment history | 0.167 | 0.291 |
| HIV/HCV co-infected patient | 0.043 | 0.342 |
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| HCV G1/4 and treatment- naïve patient | 0.331 | 0.879 |
| HCV G2/3 and treatment- naïve patient | 0.960 | 0.532 |
| Patients with unsuccessful or unknown treatment history | 0.189 | 0.143 |