Literature DB >> 23028185

The ubiquitin-proteasome system of Saccharomyces cerevisiae.

Daniel Finley1, Helle D Ulrich, Thomas Sommer, Peter Kaiser.   

Abstract

Protein modifications provide cells with exquisite temporal and spatial control of protein function. Ubiquitin is among the most important modifiers, serving both to target hundreds of proteins for rapid degradation by the proteasome, and as a dynamic signaling agent that regulates the function of covalently bound proteins. The diverse effects of ubiquitylation reflect the assembly of structurally distinct ubiquitin chains on target proteins. The resulting ubiquitin code is interpreted by an extensive family of ubiquitin receptors. Here we review the components of this regulatory network and its effects throughout the cell.

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Year:  2012        PMID: 23028185      PMCID: PMC3454868          DOI: 10.1534/genetics.112.140467

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  485 in total

1.  Degradation of the transcription factor Gcn4 requires the kinase Pho85 and the SCF(CDC4) ubiquitin-ligase complex.

Authors:  A Meimoun; T Holtzman; Z Weissman; H J McBride; D J Stillman; G R Fink; D Kornitzer
Journal:  Mol Biol Cell       Date:  2000-03       Impact factor: 4.138

2.  A proteasomal ATPase subunit recognizes the polyubiquitin degradation signal.

Authors:  Y Amy Lam; T Glen Lawson; Murugesan Velayutham; Jay L Zweier; Cecile M Pickart
Journal:  Nature       Date:  2002-04-18       Impact factor: 49.962

Review 3.  p97 and close encounters of every kind: a brief review.

Authors:  I Dreveny; V E Pye; F Beuron; L C Briggs; R L Isaacson; S J Matthews; C McKeown; X Yuan; X Zhang; P S Freemont
Journal:  Biochem Soc Trans       Date:  2004-11       Impact factor: 5.407

4.  Ubiquitination of mammalian Pex5p, the peroxisomal import receptor.

Authors:  Andreia F Carvalho; Manuel P Pinto; Cláudia P Grou; Inês S Alencastre; Marc Fransen; Clara Sá-Miranda; Jorge E Azevedo
Journal:  J Biol Chem       Date:  2007-08-28       Impact factor: 5.157

Review 5.  Recognition and processing of ubiquitin-protein conjugates by the proteasome.

Authors:  Daniel Finley
Journal:  Annu Rev Biochem       Date:  2009       Impact factor: 23.643

6.  Ubiquitin depletion as a key mediator of toxicity by translational inhibitors.

Authors:  John Hanna; David S Leggett; Daniel Finley
Journal:  Mol Cell Biol       Date:  2003-12       Impact factor: 4.272

7.  Activation of ubiquitin-dependent DNA damage bypass is mediated by replication protein a.

Authors:  Adelina A Davies; Diana Huttner; Yasukazu Daigaku; Shuhua Chen; Helle D Ulrich
Journal:  Mol Cell       Date:  2008-03-14       Impact factor: 17.970

8.  ESCRT ubiquitin-binding domains function cooperatively during MVB cargo sorting.

Authors:  S Brookhart Shields; Andrea J Oestreich; Stanley Winistorfer; Doris Nguyen; Johanna A Payne; David J Katzmann; Robert Piper
Journal:  J Cell Biol       Date:  2009-04-20       Impact factor: 10.539

9.  Defining the glycan destruction signal for endoplasmic reticulum-associated degradation.

Authors:  Erin M Quan; Yukiko Kamiya; Daiki Kamiya; Vladimir Denic; Jimena Weibezahn; Koichi Kato; Jonathan S Weissman
Journal:  Mol Cell       Date:  2008-12-26       Impact factor: 17.970

10.  Functional overlap of sequences that activate transcription and signal ubiquitin-mediated proteolysis.

Authors:  S E Salghetti; M Muratani; H Wijnen; B Futcher; W P Tansey
Journal:  Proc Natl Acad Sci U S A       Date:  2000-03-28       Impact factor: 11.205

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  180 in total

Review 1.  Role of Rsp5 ubiquitin ligase in biogenesis of rRNA, mRNA and tRNA in yeast.

Authors:  Anna Domanska; Joanna Kaminska
Journal:  RNA Biol       Date:  2015       Impact factor: 4.652

2.  Proteomic Analysis Identifies Ribosome Reduction as an Effective Proteotoxic Stress Response.

Authors:  Angel Guerra-Moreno; Marta Isasa; Meera K Bhanu; David P Waterman; Vinay V Eapen; Steven P Gygi; John Hanna
Journal:  J Biol Chem       Date:  2015-10-21       Impact factor: 5.157

3.  Cuz1/Ynl155w, a zinc-dependent ubiquitin-binding protein, protects cells from metalloid-induced proteotoxicity.

Authors:  John Hanna; David Waterman; Marta Isasa; Suzanne Elsasser; Yuan Shi; Steven Gygi; Daniel Finley
Journal:  J Biol Chem       Date:  2013-12-02       Impact factor: 5.157

4.  Importance of Proteasome Gene Expression during Model Dough Fermentation after Preservation of Baker's Yeast Cells by Freezing.

Authors:  Daisuke Watanabe; Hiroshi Sekiguchi; Yukiko Sugimoto; Atsushi Nagasawa; Naotaka Kida; Hiroshi Takagi
Journal:  Appl Environ Microbiol       Date:  2018-05-31       Impact factor: 4.792

5.  Closing the MCM cycle at replication termination sites.

Authors:  Armelle Lengronne; Philippe Pasero
Journal:  EMBO Rep       Date:  2014-11-12       Impact factor: 8.807

6.  The Cdc48 Complex Alleviates the Cytotoxicity of Misfolded Proteins by Regulating Ubiquitin Homeostasis.

Authors:  Ryan Higgins; Marie-Helene Kabbaj; Delaney Sherwin; Lauren A Howell; Alexa Hatcher; Robert J Tomko; Yanchang Wang
Journal:  Cell Rep       Date:  2020-07-14       Impact factor: 9.423

7.  Multiple chemo-genetic interactions between a toxic metabolite and the ubiquitin pathway in yeast.

Authors:  Delphine Albrecht; Hans C Hürlimann; Johanna Ceschin; Christelle Saint-Marc; Benoît Pinson; Bertrand Daignan-Fornier
Journal:  Curr Genet       Date:  2018-05-02       Impact factor: 3.886

Review 8.  Ubiquitin-dependent protein degradation at the endoplasmic reticulum and nuclear envelope.

Authors:  Adrian B Mehrtash; Mark Hochstrasser
Journal:  Semin Cell Dev Biol       Date:  2018-10-09       Impact factor: 7.727

9.  Site-Specific K63 Ubiquitinomics Provides Insights into Translation Regulation under Stress.

Authors:  Songhee Back; Andrew W Gorman; Christine Vogel; Gustavo M Silva
Journal:  J Proteome Res       Date:  2018-12-10       Impact factor: 4.466

10.  The Capture of a Disabled Proteasome Identifies Erg25 as a Substrate for Endoplasmic Reticulum Associated Degradation.

Authors:  Teresa M Buck; Xuemei Zeng; Pamela S Cantrell; Richard T Cattley; Zikri Hasanbasri; Megan E Yates; Diep Nguyen; Nathan A Yates; Jeffrey L Brodsky
Journal:  Mol Cell Proteomics       Date:  2020-08-31       Impact factor: 5.911

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