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Literature DB >> 23027966

Boolean modeling of gene regulatory networks: Driesch redux.

David N Arnosti¹, Ahmet Ay.

Abstract

Mesh：

Year: 2012 PMID： 23027966 PMCID： PMC3494909 DOI： 10.1073/pnas.1215732109

Source DB: PubMed Journal: Proc Natl Acad Sci U S A ISSN： 0027-8424 Impact factor: 11.205

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11 in total

1. The segment polarity network is a robust developmental module.

Authors: G von Dassow; E Meir; E M Munro; G M Odell
Journal: Nature Date: 2000-07-13 Impact factor: 49.962

2. Dynamic control of positional information in the early Drosophila embryo.

Authors: Johannes Jaeger; Svetlana Surkova; Maxim Blagov; Hilde Janssens; David Kosman; Konstantin N Kozlov; Ekaterina Myasnikova; Carlos E Vanario-Alonso; Maria Samsonova; David H Sharp; John Reinitz
Journal: Nature Date: 2004-07-15 Impact factor: 49.962

3. Robustness and fragility of Boolean models for genetic regulatory networks.

Authors: Madalena Chaves; Réka Albert; Eduardo D Sontag
Journal: J Theor Biol Date: 2005-03-19 Impact factor: 2.691

4. Evolutionary analysis of the well characterized endo16 promoter reveals substantial variation within functional sites.

Authors: James P Balhoff; Gregory A Wray
Journal: Proc Natl Acad Sci U S A Date: 2005-06-03 Impact factor: 11.205

5. Design principles of cell circuits with paradoxical components.

Authors: Yuval Hart; Yaron E Antebi; Avraham E Mayo; Nir Friedman; Uri Alon
Journal: Proc Natl Acad Sci U S A Date: 2012-05-04 Impact factor: 11.205

Review 6. Mathematical modeling of gene expression: a guide for the perplexed biologist.

Authors: Ahmet Ay; David N Arnosti
Journal: Crit Rev Biochem Mol Biol Date: 2011-04 Impact factor: 8.250

7. The topology of the regulatory interactions predicts the expression pattern of the segment polarity genes in Drosophila melanogaster.

Authors: Réka Albert; Hans G Othmer
Journal: J Theor Biol Date: 2003-07-07 Impact factor: 2.691

Boolean modeling of gene regulatory networks: Driesch redux.

1. The segment polarity network is a robust developmental module.

2. Dynamic control of positional information in the early Drosophila embryo.

3. Robustness and fragility of Boolean models for genetic regulatory networks.

4. Evolutionary analysis of the well characterized endo16 promoter reveals substantial variation within functional sites.

5. Design principles of cell circuits with paradoxical components.

Review 6. Mathematical modeling of gene expression: a guide for the perplexed biologist.

7. The topology of the regulatory interactions predicts the expression pattern of the segment polarity genes in Drosophila melanogaster.

8. Cis-regulatory logic in the endo16 gene: switching from a specification to a differentiation mode of control.

9. Dissecting sources of quantitative gene expression pattern divergence between Drosophila species.

10. Modeling of gap gene expression in Drosophila Kruppel mutants.

1. Applying gene regulatory network logic to the evolution of social behavior.