| Literature DB >> 23025700 |
Zhibang Zhang1, Jianfei Chen, Hongyan Shi, Xiaojin Chen, Da Shi, Li Feng, Bin Yang.
Abstract
BACKGROUND: The major structural protein of coronaviruses, the membrane (M) protein, can elicit the formation of protective antibodies, but little information is available about the M protein of porcine epidemic diarrhea virus (PEDV). Identification of epitopes on the PEDV M protein will be helpful in the elucidation of the antigenic properties of this protein.Entities:
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Year: 2012 PMID: 23025700 PMCID: PMC3519612 DOI: 10.1186/1743-422X-9-225
Source DB: PubMed Journal: Virol J ISSN: 1743-422X Impact factor: 4.099
Figure 1Schematic diagram of the relative locations of the truncated forms of the M protein of the PEDV CH/SHH/06 strain. The bars represent the truncated M proteins. The numbers represent the amino acid positions of the M protein. The bars filled with dots represent the peptides that were positive in WB analysis and ELISA with McAb 4D4 and the blank bars represent the peptides that were not recognized by McAb 4D4.
Figure 2The McAb 4D4 recognizes PEDV-infected Vero E6 cells and native M protein of PEDV. (A) IFA test of PEDV-infected Vero E6 cells probed with McAb 4D4 (i) and negative serum (ii); (B) PEDV particles (lane 1) and TGEV particles (lane 2) were evaluated for reactivity with McAb 4D4 by WB; the PEDV particles (lane 3) incubated with negative serum represent the negative control. M: Protein marker
Figure 3Precise localization of the McAb 4D4-defined epitope. The reactivity of McAb 4D4 with different truncated M proteins was determined by ELISA (A) and WB (B and C). The names of the peptides are the same as in Table 1. “His” and “GST”, representing the 6×His tag and the GST tag, were used as negative controls, and the GST-tM protein was used as the positive control. Mr: Protein marker.
Sequences of the primers used in this study
| tM-His6 | F: ATA | 295–678 | 384bp |
| R: CGC | |||
| F: TAA | |||
| GST-tM | R: CGG | 295–678 | 384bp |
| F: TAT | |||
| M1 | R: TAT | 295–480 | 186bp |
| F: GCG | |||
| M2 | R: GCG | 358–540 | 183bp |
| F: GCA | |||
| M3 | R: CTA | 478–678 | 201bp |
| F: | |||
| M4 | AGGCCACTACAACAATTGTCTATGGACGTGTT | 478-549 | 72bp |
| R: | |||
| CTGTGACGAAATTAGGTAATTGACTTACCTGTAC | |||
| F: | |||
| M5 | GTTGGGCTTTCTATGTCCGG | 541–600 | 60bp |
| R: | |||
| TTGACTGAACGACCAACACGTCC | |||
| M6 | F: | 592–627 | 36bp |
| R: | |||
| M7 | F: | 619–654 | 36bp |
| R: | |||
| M8 | R: | 646–678 | 33bp |
| M9 | F: | 541–564 | 24bp |
| R: | |||
| M10 | F: | 553–576 | 24bp |
| R: | |||
| M11 | F: | 565–588 | 24bp |
| R: | |||
| M12 | F: | 577–600 | 24bp |
| R: | |||
| M13 | F: | 580–600 | 21bp |
| R: | |||
| M14 | F: | 583–600 | 18bp |
| R: | |||
| F003A | |||
| M15 | R: | 586–600 | 15bp |
| R: | |||
| M16 | F: | 583–597 | 15bp |
| R: | |||
| M17 | F: | 583–594 | 12bp |
| R: |
The introduced restriction enzyme sites (NdeI and XhoI or BamHI and XhoI) are underlined. At the 5’ and 3’ terminal of each forward strand there is a sequence “gatcc” and “taac” (in italics), respectively. At the 3’ and 5’ terminal of each reverse strand there is a sequence “g” and “tcgagtta” (in italics), respectively. When the forward and reverse oligonucleotides annealed they form a cohesive BamHI site or NdeI at the 5’ terminus and a cohesive XhoI site at the 3’ terminus. The bases “taa” and “tta” (in bold) were introduced into each pair of oligonucleotides to form a stop codon.
Figure 4The epitope M14 could differentiate PEDV-positive serum from TGEV-positive serum. The WB results for the GST tag (negative control, lane 1) and the defined epitope M14 (lane 2) with PEDV-positive serum (A) or TGEV-positive serum (B), respectively. M: Protein marker.
Figure 5Alignment of the amino acid sequences of the defined epitope and surrounding region with those of nine PEDV reference strains (A) and nine other coronaviruses (B). The dots represent residues that match the epitope exactly. The homologous regions of different coronaviruses that correspond to the identified epitope are in the box. Abbreviations of each virus and its strain are listed, and the corresponding GenBank accession numbers are shown in parentheses.