Literature DB >> 2302326

Refinement of triclinic lysozyme: I. Fourier and least-squares methods.

J M Hodsdon1, G M Brown, L C Sieker, L H Jensen.   

Abstract

X-ray diffraction data to 1.5 A resolution have been collected for triclinic crystals of hen egg white lysozyme. The triclinic model was derived from the tetragonal one by the rotation function and refined initially by Fo-Fc and differential difference syntheses against 2 A resolution data. Refinement was continued by differential difference cycles against the 1.5 A data until R was reduced to 0.220. Although the initial refinement was rapid, it was subsequently a matter of attrition, leading to a complete recheck of the data and the discovery of systematic error which affected primarily the high-resolution data. Refinement was continued against the corrected 2 A data by block-diagonal least squares. After five cycles the refinement was terminated at R = 0.254 because of the imminent availability of a preferred refinement program. Problems with the protein model, the solvent, and the interaction of the scale and thermal parameters are discussed. The experiences gained in this study are summarized.

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Year:  1990        PMID: 2302326     DOI: 10.1107/s0108768189009183

Source DB:  PubMed          Journal:  Acta Crystallogr B        ISSN: 0108-7681


  5 in total

1.  Monoclinic form of isopentenyl diphosphate isomerase: a case of polymorphism in biomolecular crystals.

Authors:  Jérôme de Ruyck; Yamina Oudjama; Johan Wouters
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2008-03-21

2.  The Shake-and-Bake structure determination of triclinic lysozyme.

Authors:  A M Deacon; C M Weeks; R Miller; S E Ealick
Journal:  Proc Natl Acad Sci U S A       Date:  1998-08-04       Impact factor: 11.205

3.  Conformation and hydrogen ion titration of proteins: a continuum electrostatic model with conformational flexibility.

Authors:  T J You; D Bashford
Journal:  Biophys J       Date:  1995-11       Impact factor: 4.033

4.  Crystal structure of a ubiquitin-dependent degradation substrate: a three-disulfide form of lysozyme.

Authors:  C P Hill; N L Johnston; R E Cohen
Journal:  Proc Natl Acad Sci U S A       Date:  1993-05-01       Impact factor: 11.205

5.  A critical evaluation of the predicted and X-ray structures of alpha-lactalbumin.

Authors:  K R Acharya; D I Stuart; D C Phillips; H A Scheraga
Journal:  J Protein Chem       Date:  1990-10
  5 in total

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