Literature DB >> 23017207

Regulation of mean and noise of the in vivo kinetics of transcription under the control of the lac/ara-1 promoter.

Meenakshisundaram Kandhavelu1, Jason Lloyd-Price, Abhishekh Gupta, Anantha-Barathi Muthukrishnan, Olli Yli-Harja, Andre S Ribeiro.   

Abstract

The kinetics of transcription initiation in Escherichia coli depend on the duration of two rate-limiting steps, the closed and the open complex formation. In a lac promoter variant, P(lac/ara-1), the kinetics of these steps is controlled by IPTG and arabinose. From in vivo single-RNA measurements, we find that induction affects the mean and normalized variance of the intervals between consecutive RNA productions. Transcript production is sub-Poissonian in all conditions tested. The kinetics of each step is independently controlled by a different inducer. We conclude that the regulatory mechanism of P(lac/ara-1) allows the stochasticity of gene expression to be environment-dependent.
Copyright © 2012 Federation of European Biochemical Societies. Published by Elsevier B.V. All rights reserved.

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Year:  2012        PMID: 23017207     DOI: 10.1016/j.febslet.2012.09.014

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  7 in total

1.  In vivo kinetics of segregation and polar retention of MS2-GFP-RNA complexes in Escherichia coli.

Authors:  Abhishekh Gupta; Jason Lloyd-Price; Ramakanth Neeli-Venkata; Samuel M D Oliveira; Andre S Ribeiro
Journal:  Biophys J       Date:  2014-05-06       Impact factor: 4.033

2.  Origins of transcriptional transition: balance between upstream and downstream regulatory gene sequences.

Authors:  Adrien Sala; Muhammad Shoaib; Olga Anufrieva; Gnanavel Mutharasu; Olli Yli-Harja; Meenakshisundaram Kandhavelu
Journal:  MBio       Date:  2015-01-27       Impact factor: 7.867

3.  In vivo transcription kinetics of a synthetic gene uninvolved in stress-response pathways in stressed Escherichia coli cells.

Authors:  Anantha-Barathi Muthukrishnan; Antti Martikainen; Ramakanth Neeli-Venkata; Andre S Ribeiro
Journal:  PLoS One       Date:  2014-09-30       Impact factor: 3.240

4.  Temperature-Dependent Model of Multi-step Transcription Initiation in Escherichia coli Based on Live Single-Cell Measurements.

Authors:  Samuel M D Oliveira; Antti Häkkinen; Jason Lloyd-Price; Huy Tran; Vinodh Kandavalli; Andre S Ribeiro
Journal:  PLoS Comput Biol       Date:  2016-10-28       Impact factor: 4.475

5.  In vivo single-molecule kinetics of activation and subsequent activity of the arabinose promoter.

Authors:  Jarno Mäkelä; Meenakshisundaram Kandhavelu; Samuel M D Oliveira; Jerome G Chandraseelan; Jason Lloyd-Price; Juha Peltonen; Olli Yli-Harja; Andre S Ribeiro
Journal:  Nucleic Acids Res       Date:  2013-05-03       Impact factor: 16.971

6.  Dissecting the stochastic transcription initiation process in live Escherichia coli.

Authors:  Jason Lloyd-Price; Sofia Startceva; Vinodh Kandavalli; Jerome G Chandraseelan; Nadia Goncalves; Samuel M D Oliveira; Antti Häkkinen; Andre S Ribeiro
Journal:  DNA Res       Date:  2016-03-28       Impact factor: 4.458

7.  Precision of Readout at the hunchback Gene: Analyzing Short Transcription Time Traces in Living Fly Embryos.

Authors:  Jonathan Desponds; Huy Tran; Teresa Ferraro; Tanguy Lucas; Carmina Perez Romero; Aurelien Guillou; Cecile Fradin; Mathieu Coppey; Nathalie Dostatni; Aleksandra M Walczak
Journal:  PLoS Comput Biol       Date:  2016-12-12       Impact factor: 4.475

  7 in total

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