Literature DB >> 23012075

The reaction coordinate of a bacterial GH47 α-mannosidase: a combined quantum mechanical and structural approach.

Andrew J Thompson1, Jerome Dabin, Javier Iglesias-Fernández, Albert Ardèvol, Zoran Dinev, Spencer J Williams, Omprakash Bande, Aloysius Siriwardena, Carl Moreland, Ting-Chou Hu, David K Smith, Harry J Gilbert, Carme Rovira, Gideon J Davies.   

Abstract

Mannosides in the southern hemisphere: Conformational analysis of enzymatic mannoside hydrolysis informs strategies for enzyme inhibition and inspires solutions to mannoside synthesis. Atomic resolution structures along the reaction coordinate of an inverting α-mannosidase show how the enzyme distorts the substrate and transition state. QM/MM calculations reveal how the free energy landscape of isolated α-D-mannose is molded on enzyme to only allow one conformationally accessible reaction coordinate.
Copyright © 2012 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

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Year:  2012        PMID: 23012075     DOI: 10.1002/anie.201205338

Source DB:  PubMed          Journal:  Angew Chem Int Ed Engl        ISSN: 1433-7851            Impact factor:   15.336


  13 in total

1.  Estimation of the quality of refined protein crystal structures.

Authors:  Jimin Wang
Journal:  Protein Sci       Date:  2015-03-11       Impact factor: 6.725

2.  Systematic analysis of residual density suggests that a major limitation in well-refined X-ray structures of proteins is the omission of ordered solvent.

Authors:  Jimin Wang
Journal:  Protein Sci       Date:  2017-03-07       Impact factor: 6.725

3.  Substrate recognition and catalysis by GH47 α-mannosidases involved in Asn-linked glycan maturation in the mammalian secretory pathway.

Authors:  Yong Xiang; Khanita Karaveg; Kelley W Moremen
Journal:  Proc Natl Acad Sci U S A       Date:  2016-11-17       Impact factor: 11.205

4.  The hydrolysis mechanism of a GH45 cellulase and its potential relation to lytic transglycosylase and expansin function.

Authors:  Vivek S Bharadwaj; Brandon C Knott; Jerry Ståhlberg; Gregg T Beckham; Michael F Crowley
Journal:  J Biol Chem       Date:  2020-02-13       Impact factor: 5.157

5.  GH47 and Other Glycoside Hydrolases Catalyze Glycosidic Bond Cleavage with the Assistance of Substrate Super-arming at the Transition State.

Authors:  Jonathan C K Quirke; David Crich
Journal:  ACS Catal       Date:  2021-08-04       Impact factor: 13.700

6.  Combined inhibitor free-energy landscape and structural analysis reports on the mannosidase conformational coordinate.

Authors:  Rohan J Williams; Javier Iglesias-Fernández; Judith Stepper; Adam Jackson; Andrew J Thompson; Elisabeth C Lowe; Jonathan M White; Harry J Gilbert; Carme Rovira; Gideon J Davies; Spencer J Williams
Journal:  Angew Chem Int Ed Engl       Date:  2013-12-11       Impact factor: 15.336

7.  A β-Mannanase with a Lysozyme-like Fold and a Novel Molecular Catalytic Mechanism.

Authors:  Yi Jin; Marija Petricevic; Alan John; Lluís Raich; Huw Jenkins; Leticia Portela De Souza; Fiona Cuskin; Harry J Gilbert; Carme Rovira; Ethan D Goddard-Borger; Spencer J Williams; Gideon J Davies
Journal:  ACS Cent Sci       Date:  2016-11-08       Impact factor: 14.553

8.  The complete conformational free energy landscape of β-xylose reveals a two-fold catalytic itinerary for β-xylanases.

Authors:  Javier Iglesias-Fernández; Lluís Raich; Albert Ardèvol; Carme Rovira
Journal:  Chem Sci       Date:  2014-10-27       Impact factor: 9.825

Review 9.  Dissecting conformational contributions to glycosidase catalysis and inhibition.

Authors:  Gaetano Speciale; Andrew J Thompson; Gideon J Davies; Spencer J Williams
Journal:  Curr Opin Struct Biol       Date:  2014-07-10       Impact factor: 6.809

10.  1,6-Cyclophellitol Cyclosulfates: A New Class of Irreversible Glycosidase Inhibitor.

Authors:  Marta Artola; Liang Wu; Maria J Ferraz; Chi-Lin Kuo; Lluís Raich; Imogen Z Breen; Wendy A Offen; Jeroen D C Codée; Gijsbert A van der Marel; Carme Rovira; Johannes M F G Aerts; Gideon J Davies; Herman S Overkleeft
Journal:  ACS Cent Sci       Date:  2017-07-13       Impact factor: 14.553

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