Literature DB >> 23007504

Evaluating the microRNA targeting sites by luciferase reporter gene assay.

Yi Jin1, Zujian Chen, Xiqiang Liu, Xiaofeng Zhou.   

Abstract

MicroRNAs are post-transcriptional regulators that control mRNA stability and the translation efficiency of their target genes. Mature microRNAs are approximately 22-nucleotide in length. They mediate post-transcriptional gene regulation by binding to the imperfect complementary sequences (a.k.a. microRNA regulatory elements, MRE) in the target mRNAs. It is estimated that more than one-third of the protein-coding genes in the human genome are regulated by microRNAs. The experimental methods to examine the interaction between the microRNA and its targeting site(s) in the mRNA are important for understanding microRNA functions. The luciferase reporter gene assay has recently been adapted to test the effect of microRNAs. In this chapter, we use a previously identified miR-138 targeting site in the 3'-untranslated region (3'-UTR) of the RhoC mRNA as an example to describe a quick method for testing the interaction of microRNA and mRNA.

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Year:  2013        PMID: 23007504      PMCID: PMC3646406          DOI: 10.1007/978-1-62703-083-0_10

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  18 in total

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Authors:  Yang Dai; Xiaofeng Zhou
Journal:  Open Access Bioinformatics       Date:  2010-05-01

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Authors:  David P Bartel
Journal:  Cell       Date:  2004-01-23       Impact factor: 41.582

3.  Downregulation of the Rho GTPase signaling pathway is involved in the microRNA-138-mediated inhibition of cell migration and invasion in tongue squamous cell carcinoma.

Authors:  Lu Jiang; Xiqiang Liu; Antonia Kolokythas; Jinsheng Yu; Anxun Wang; Caroline E Heidbreder; Fei Shi; Xiaofeng Zhou
Journal:  Int J Cancer       Date:  2010-08-01       Impact factor: 7.396

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Authors:  Masahiro Seike; Akiteru Goto; Tetsuya Okano; Elise D Bowman; Aaron J Schetter; Izumi Horikawa; Ewy A Mathe; Jin Jen; Ping Yang; Haruhiko Sugimura; Akihiko Gemma; Shoji Kudoh; Carlo M Croce; Curtis C Harris
Journal:  Proc Natl Acad Sci U S A       Date:  2009-07-13       Impact factor: 11.205

5.  Mature miR-184 as Potential Oncogenic microRNA of Squamous Cell Carcinoma of Tongue.

Authors:  Thian-Sze Wong; Xiao-Bing Liu; Birgitta Yee-Hang Wong; Raymond Wai-Man Ng; Anthony Po-Wing Yuen; William Ignace Wei
Journal:  Clin Cancer Res       Date:  2008-05-01       Impact factor: 12.531

6.  Downregulation of miR-138 is associated with overexpression of human telomerase reverse transcriptase protein in human anaplastic thyroid carcinoma cell lines.

Authors:  Shingo Mitomo; Chihaya Maesawa; Satoshi Ogasawara; Takeshi Iwaya; Masahiko Shibazaki; Akiko Yashima-Abo; Koji Kotani; Hiroki Oikawa; Eiich Sakurai; Naoko Izutsu; Kuniyuki Kato; Hideaki Komatsu; Kenichro Ikeda; Go Wakabayashi; Tomoyuki Masuda
Journal:  Cancer Sci       Date:  2008-01-14       Impact factor: 6.716

7.  miR-24 regulates apoptosis by targeting the open reading frame (ORF) region of FAF1 in cancer cells.

Authors:  Wenming Qin; Yi Shi; Botao Zhao; Chengguo Yao; Li Jin; Jiexian Ma; Youxin Jin
Journal:  PLoS One       Date:  2010-02-25       Impact factor: 3.240

8.  Identification of pyruvate kinase type M2 as potential oncoprotein in squamous cell carcinoma of tongue through microRNA profiling.

Authors:  Thian-Sze Wong; Xiao-Bing Liu; Ambrose Chung-Wai Ho; Anthony Po-Wing Yuen; Raymond Wai-Man Ng; William Ignace Wei
Journal:  Int J Cancer       Date:  2008-07-15       Impact factor: 7.396

9.  A functional screen implicates microRNA-138-dependent regulation of the depalmitoylation enzyme APT1 in dendritic spine morphogenesis.

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Journal:  Nat Cell Biol       Date:  2009-05-24       Impact factor: 28.824

10.  microRNA-138 modulates cardiac patterning during embryonic development.

Authors:  Sarah U Morton; Paul J Scherz; Kimberly R Cordes; Kathryn N Ivey; Didier Y R Stainier; Deepak Srivastava
Journal:  Proc Natl Acad Sci U S A       Date:  2008-11-12       Impact factor: 11.205

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  56 in total

1.  microRNA cluster 106a~363 is involved in T helper 17 cell differentiation.

Authors:  Marc Kästle; Sabine Bartel; Kerstin Geillinger-Kästle; Martin Irmler; Johannes Beckers; Bernhard Ryffel; Oliver Eickelberg; Susanne Krauss-Etschmann
Journal:  Immunology       Date:  2017-07-28       Impact factor: 7.397

2.  MicroRNA-138 Inhibits Periodontal Progenitor Differentiation under Inflammatory Conditions.

Authors:  X Zhou; X Luan; Z Chen; M Francis; G Gopinathan; W Li; X Lu; S Li; C Wu; T G H Diekwisch
Journal:  J Dent Res       Date:  2015-10-30       Impact factor: 6.116

3.  Computational Systems Biology Approach Predicts Regulators and Targets of microRNAs and Their Genomic Hotspots in Apoptosis Process.

Authors:  Ibrahim O Alanazi; Esmaeil Ebrahimie
Journal:  Mol Biotechnol       Date:  2016-07       Impact factor: 2.695

Review 4.  Towards systems tissue engineering: Elucidating the dynamics, spatial coordination, and individual cells driving emergent behaviors.

Authors:  Matthew S Hall; Joseph T Decker; Lonnie D Shea
Journal:  Biomaterials       Date:  2020-06-14       Impact factor: 12.479

5.  microRNA-22 promotes megakaryocyte differentiation through repression of its target, GFI1.

Authors:  Cary N Weiss; Keisuke Ito
Journal:  Blood Adv       Date:  2019-01-08

6.  Genetic polymorphism in Hsp90AA1 gene is associated with the thermotolerance in Chinese Holstein cows.

Authors:  T M Badri; K L Chen; M A Alsiddig; Lian Li; Yafei Cai; G L Wang
Journal:  Cell Stress Chaperones       Date:  2018-01-20       Impact factor: 3.667

7.  Circular RNA Vav3 sponges gga-miR-375 to promote epithelial-mesenchymal transition.

Authors:  Xinheng Zhang; Yiming Yan; Wencheng Lin; Aijun Li; Huanmin Zhang; Xiaoya Lei; Zhenkai Dai; Xinjian Li; Hongxin Li; Weiguo Chen; Feng Chen; Jingyun Ma; Qingmei Xie
Journal:  RNA Biol       Date:  2019-01-15       Impact factor: 4.652

8.  MicroRNA target prediction: theory and practice.

Authors:  Mathias Wagner; Benjamin Vicinus; Vilma Oliveira Frick; Michael Auchtor; Claudia Rubie; Pascal Jeanmonod; Tereza A Richards; Roland Linder; Frank Weichert
Journal:  Mol Genet Genomics       Date:  2014-06-18       Impact factor: 3.291

9.  Insights into the Role of microRNAs in Pancreatic Cancer Pathogenesis: Potential for Diagnosis, Prognosis, and Therapy.

Authors:  Mohammad Aslam Khan; Haseeb Zubair; Sanjeev Kumar Srivastava; Seema Singh; Ajay Pratap Singh
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10.  SRY-Box 21 Antisense RNA 1 Knockdown Diminishes Amyloid Beta25-35-Induced Neuronal Damage by miR-132/PI3K/AKT Pathway.

Authors:  Fengming Gu; Daofei Ji; Hongzao Ni; Depeng Chen
Journal:  Neurochem Res       Date:  2021-06-19       Impact factor: 3.996

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