Literature DB >> 23005991

Physical origin of anharmonic dynamics in proteins: new insights from resolution-dependent neutron scattering on homomeric polypeptides.

Giorgio Schiró1, Francesca Natali, Antonio Cupane.   

Abstract

Neutron scattering reveals a complex dynamics in polypeptide chains, with two main onsets of anharmonicity whose physical origin and biological role are still debated. In this study the dynamics of strategically selected homomeric polypeptides is investigated with elastic neutron scattering using different energy resolutions and compared with that of a real protein. Our data spotlight the dependence of anharmonic transition temperatures and fluctuation amplitudes on energy resolution, which we quantitatively explain in terms of a two-site model for the protein-hydration water energy landscape. Experimental data strongly suggest that the protein dynamical transition is not a mere resolution effect but is due to a real physical effect. Activation barriers and free energy values obtained for the protein dynamical transition allow us to make a connection with the two-well interaction potential of supercooled-confined water proposed to explain a low-density→high-density liquid-liquid transition.

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Year:  2012        PMID: 23005991     DOI: 10.1103/PhysRevLett.109.128102

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  9 in total

1.  Heterogeneity of protein substates visualized by spin-label EPR.

Authors:  Rita Guzzi; Rosa Bartucci; Derek Marsh
Journal:  Biophys J       Date:  2014-02-04       Impact factor: 4.033

Review 2.  Why Proteins are Big: Length Scale Effects on Equilibria and Kinetics.

Authors:  Kenneth A Rubinson
Journal:  Protein J       Date:  2019-04       Impact factor: 2.371

3.  Critical structural fluctuations of proteins upon thermal unfolding challenge the Lindemann criterion.

Authors:  Marina Katava; Guillaume Stirnemann; Marco Zanatta; Simone Capaccioli; Maria Pachetti; K L Ngai; Fabio Sterpone; Alessandro Paciaroni
Journal:  Proc Natl Acad Sci U S A       Date:  2017-08-14       Impact factor: 11.205

4.  Dynamics of the Peripheral Membrane Protein P2 from Human Myelin Measured by Neutron Scattering--A Comparison between Wild-Type Protein and a Hinge Mutant.

Authors:  Saara Laulumaa; Tuomo Nieminen; Mari Lehtimäki; Shweta Aggarwal; Mikael Simons; Michael M Koza; Ilpo Vattulainen; Petri Kursula; Francesca Natali
Journal:  PLoS One       Date:  2015-06-11       Impact factor: 3.240

5.  Translational diffusion of hydration water correlates with functional motions in folded and intrinsically disordered proteins.

Authors:  Giorgio Schirò; Yann Fichou; Francois-Xavier Gallat; Kathleen Wood; Frank Gabel; Martine Moulin; Michael Härtlein; Matthias Heyden; Jacques-Philippe Colletier; Andrea Orecchini; Alessandro Paciaroni; Joachim Wuttke; Douglas J Tobias; Martin Weik
Journal:  Nat Commun       Date:  2015-03-16       Impact factor: 14.919

6.  The role of water in protein's behavior: The two dynamical crossovers studied by NMR and FTIR techniques.

Authors:  Francesco Mallamace; Carmelo Corsaro; Domenico Mallamace; Sebastiano Vasi; Cirino Vasi; Giacomo Dugo
Journal:  Comput Struct Biotechnol J       Date:  2014-11-15       Impact factor: 7.271

Review 7.  The Role of Hydrogen Bonding in the Folding/Unfolding Process of Hydrated Lysozyme: A Review of Recent NMR and FTIR Results.

Authors:  Domenico Mallamace; Enza Fazio; Francesco Mallamace; Carmelo Corsaro
Journal:  Int J Mol Sci       Date:  2018-11-30       Impact factor: 5.923

8.  Universal dynamical onset in water at distinct material interfaces.

Authors:  Lirong Zheng; Zhuo Liu; Qiang Zhang; Song Li; Juan Huang; Lei Zhang; Bing Zan; Madhusudan Tyagi; He Cheng; Taisen Zuo; Victoria García Sakai; Takeshi Yamada; Chenxing Yang; Pan Tan; Fan Jiang; Hao Chen; Wei Zhuang; Liang Hong
Journal:  Chem Sci       Date:  2022-03-28       Impact factor: 9.825

9.  The effects of pressure on the energy landscape of proteins.

Authors:  Fabio Librizzi; Rita Carrotta; Judith Peters; Antonio Cupane
Journal:  Sci Rep       Date:  2018-02-01       Impact factor: 4.379

  9 in total

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