Literature DB >> 23005687

Universal relaxation governs the nonequilibrium elasticity of biomolecules.

Christian Kappel1, Nicole Dölker, Rajendra Kumar, Mareike Zink, Ulrich Zachariae, Helmut Grubmüller.   

Abstract

Experimental and computational dynamic force spectroscopy is widely used to determine the mechanical properties of single biomolecules. Whereas so far the focus has mainly been on rupture or unfolding forces, recent force-probe molecular dynamics simulations have revealed a strong loading rate dependence of biomolecular elasticities, which cannot be explained by the established one-dimensional transition-state treatments. We show that this nonequilibrium behavior can be explained by a theory that includes relaxation effects. For three structurally and mechanically quite diverse systems, a single relaxation mode suffices to quantitatively describe their loading-rate-dependent elastic behavior. Atomistic simulations of these systems revealed the microscopic nature of the respective relaxation modes. This result suggests a new type of "elasticity spectroscopy" experiment, which should render nonequilibrium properties of structured macromolecules accessible to single-molecule force spectroscopy.

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Year:  2012        PMID: 23005687     DOI: 10.1103/PhysRevLett.109.118304

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  3 in total

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Authors:  Yen Sun; Tzu-Lin Sun; Huey W Huang
Journal:  Biophys J       Date:  2014-11-04       Impact factor: 4.033

2.  Elastic properties and heterogeneous stiffness of the phi29 motor connector channel.

Authors:  Rajendra Kumar; Helmut Grubmüller
Journal:  Biophys J       Date:  2014-03-18       Impact factor: 4.033

3.  Disease related single point mutations alter the global dynamics of a tetratricopeptide (TPR) α-solenoid domain.

Authors:  Salomé Llabrés; Maxim I Tsenkov; Stuart A MacGowan; Geoffrey J Barton; Ulrich Zachariae
Journal:  J Struct Biol       Date:  2019-10-16       Impact factor: 2.867

  3 in total

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