Literature DB >> 23001677

Identification and distribution of high-abundance proteins in the octopus spring microbial mat community.

Courtney S Schaffert1, Christian G Klatt, David M Ward, Mark Pauley, Laurey Steinke.   

Abstract

A shotgun metaproteomics approach was employed to identify proteins in a hot spring microbial mat community. We identified 202 proteins encompassing 19 known functions from 12 known phyla. Importantly, we identified two key enzymes involved in the 3-hydroxypropionate CO(2) fixation pathway in uncultivated Roseiflexus spp., which are known photoheterotrophs.

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Year:  2012        PMID： 23001677      PMCID： PMC3497366          DOI： 10.1128/AEM.01695-12

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  22 in total

1.  Effect of temperature and light on growth of and photosynthesis by Synechococcus isolates typical of those predominating in the octopus spring microbial mat community of Yellowstone National Park.

Authors:  Jessica P Allewalt; Mary M Bateson; Niels Peter Revsbech; Kimberly Slack; David M Ward
Journal:  Appl Environ Microbiol       Date:  2006-01       Impact factor: 4.792

Review 2.  Microbial diversity in natural environments: focusing on fundamental questions.

Authors:  David M Ward
Journal:  Antonie Van Leeuwenhoek       Date:  2006-10-25       Impact factor: 2.271

3.  Impact of carbon metabolism on 13C signatures of cyanobacteria and green non-sulfur-like bacteria inhabiting a microbial mat from an alkaline siliceous hot spring in Yellowstone National Park (USA).

Authors:  Marcel T J van der Meer; Stefan Schouten; Jaap S Sinninghe Damsté; David M Ward
Journal:  Environ Microbiol       Date:  2007-02       Impact factor: 5.491

Review 4.  A natural view of microbial biodiversity within hot spring cyanobacterial mat communities.

Authors:  D M Ward; M J Ferris; S C Nold; M M Bateson
Journal:  Microbiol Mol Biol Rev       Date:  1998-12       Impact factor: 11.056

5.  Cultivation of aerobic chemoorganotrophic proteobacteria and gram-positive bacteria from a hot spring microbial mat.

Authors:  S C Nold; E D Kopczynski; D M Ward
Journal:  Appl Environ Microbiol       Date:  1996-11       Impact factor: 4.792

6.  Propionyl-coenzyme A synthase from Chloroflexus aurantiacus, a key enzyme of the 3-hydroxypropionate cycle for autotrophic CO2 fixation.

Authors:  Birgit E Alber; Georg Fuchs
Journal:  J Biol Chem       Date:  2002-01-30       Impact factor: 5.157

7.  Diel variations in carbon metabolism by green nonsulfur-like bacteria in alkaline siliceous hot spring microbial mats from Yellowstone National Park.

Authors:  Marcel T J van der Meer; Stefan Schouten; Mary M Bateson; Ulrich Nübel; Andrea Wieland; Michael Kühl; Jan W de Leeuw; Jaap S Sinninghe Damsté; David M Ward
Journal:  Appl Environ Microbiol       Date:  2005-07       Impact factor: 4.792

8.  Kinetics of the allosteric interactions of phosphofructokinase from Escherichia coli.

Authors:  D Blangy; H Buc; J Monod
Journal:  J Mol Biol       Date:  1968-01-14       Impact factor: 5.469

9.  'Candidatus Thermochlorobacter aerophilum:' an aerobic chlorophotoheterotrophic member of the phylum Chlorobi defined by metagenomics and metatranscriptomics.

Authors:  Zhenfeng Liu; Christian G Klatt; Marcus Ludwig; Douglas B Rusch; Sheila I Jensen; Michael Kühl; David M Ward; Donald A Bryant
Journal:  ISME J       Date:  2012-03-29       Impact factor: 10.302

10.  Comparative genomics provides evidence for the 3-hydroxypropionate autotrophic pathway in filamentous anoxygenic phototrophic bacteria and in hot spring microbial mats.

Authors:  Christian G Klatt; Donald A Bryant; David M Ward
Journal:  Environ Microbiol       Date:  2007-08       Impact factor: 5.491
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  5 in total

1.  Short-Term Stable Isotope Probing of Proteins Reveals Taxa Incorporating Inorganic Carbon in a Hot Spring Microbial Mat.

Authors:  Laurey Steinke; Gordon W Slysz; Mary S Lipton; Christian Klatt; James J Moran; Margie F Romine; Jason M Wood; Gordon Anderson; Donald A Bryant; David M Ward
Journal:  Appl Environ Microbiol       Date:  2020-03-18       Impact factor: 4.792

2.  Temporal metatranscriptomic patterning in phototrophic Chloroflexi inhabiting a microbial mat in a geothermal spring.

Authors:  Christian G Klatt; Zhenfeng Liu; Marcus Ludwig; Michael Kühl; Sheila I Jensen; Donald A Bryant; David M Ward
Journal:  ISME J       Date:  2013-04-11       Impact factor: 10.302

3.  Diversity of thermophiles in a Malaysian hot spring determined using 16S rRNA and shotgun metagenome sequencing.

Authors:  Chia Sing Chan; Kok-Gan Chan; Yea-Ling Tay; Yi-Heng Chua; Kian Mau Goh
Journal:  Front Microbiol       Date:  2015-03-05       Impact factor: 5.640

4.  The Dark Side of the Mushroom Spring Microbial Mat: Life in the Shadow of Chlorophototrophs. II. Metabolic Functions of Abundant Community Members Predicted from Metagenomic Analyses.

Authors:  Vera Thiel; Michael Hügler; David M Ward; Donald A Bryant
Journal:  Front Microbiol       Date:  2017-06-06       Impact factor: 5.640

Review 5.  Molecular Ecology of Hypersaline Microbial Mats: Current Insights and New Directions.

Authors:  Hon Lun Wong; Aria Ahmed-Cox; Brendan Paul Burns
Journal:  Microorganisms       Date:  2016-01-05
  5 in total

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