Literature DB >> 23001561

A novel long-range enhancer regulates postnatal expression of Zeb2: implications for Mowat-Wilson syndrome phenotypes.

Muna M El-Kasti1, Timothy Wells, David A Carter.   

Abstract

The zinc-finger, E-box-binding homeobox-2 (Zeb2) gene encodes a SMAD-interacting transcription factor that has diverse roles in development and disease. Mutations at the hZeb2 locus cause Mowat-Wilson syndrome (MWS), a genetic disorder that is associated with mental retardation and other, case- and sex-dependent clinical features. Recent studies have detailed microRNA-mediated control of Zeb2, but little is known about the genomic context of this gene or of enhancer sequences that may direct its diverse functions. Here, we describe a novel transgenic rodent model in which Zeb2 regulatory sequence has been disrupted, resulting in a postnatal developmental phenotype that is autosomal dominant. The phenotype exhibits a genotype-by-sex interaction and manifests primarily as an acute attenuation of postnatal kidney development in males. Other aspects of embryonic and neonatal development, including neuronal, are unaffected. The transgene insertion site is associated with a 12 kb deletion, 1.2 Mb upstream of Zeb2, within a 4.1 Mb gene desert. A conserved sequence, derived from the deleted region, enhanced Zeb2 promoter activity in transcription assays. Tissue and temporal restriction of this enhancer activity may involve postnatal changes in proteins that bind this sequence. A control human/mouse VISTA enhancer (62 kb upstream of Zeb2) also up-regulated the Zeb2 promoter, providing evidence of a string of conserved distal enhancers. The phenotype arising from deletion of one copy of the extreme long-range enhancer indicates a critical role for this enhancer at one developmental stage. Haploinsufficiency of Zeb2 in this developmental context reflects inheritance of MWS and may underlie some sex-dependent, non-neural characteristics of this human inherited disorder.

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Year:  2012        PMID: 23001561     DOI: 10.1093/hmg/dds389

Source DB:  PubMed          Journal:  Hum Mol Genet        ISSN: 0964-6906            Impact factor:   6.150


  15 in total

1.  Postnatal dynamics of Zeb2 expression in rat brain: analysis of novel 3' UTR sequence reveals a miR-9 interacting site.

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Journal:  J Mol Neurosci       Date:  2013-10-25       Impact factor: 3.444

Review 2.  Absence of a simple code: how transcription factors read the genome.

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Journal:  Trends Biochem Sci       Date:  2014-08-14       Impact factor: 13.807

3.  Loss of Zeb2 in mesenchyme-derived nephrons causes primary glomerulocystic disease.

Authors:  Hila Milo Rasouly; Sudhir Kumar; Stefanie Chan; Anna Pisarek-Horowitz; Richa Sharma; Qiongchao J Xi; Yuriko Nishizaki; Yujiro Higashi; David J Salant; Richard L Maas; Weining Lu
Journal:  Kidney Int       Date:  2016-08-31       Impact factor: 10.612

4.  Heterogeneous tempo and mode of conserved noncoding sequence evolution among four mammalian orders.

Authors:  Isaac Adeyemi Babarinde; Naruya Saitou
Journal:  Genome Biol Evol       Date:  2013       Impact factor: 3.416

5.  ZEB2 inhibits HBV transcription and replication by targeting its core promoter.

Authors:  Qiao He; Wanyu Li; Jihua Ren; Yecai Huang; Ying Huang; Qin Hu; Juan Chen; Weixian Chen
Journal:  Oncotarget       Date:  2016-03-29

6.  Genomic sequencing of a dyslexia susceptibility haplotype encompassing ROBO1.

Authors:  Satu Massinen; Jingwen Wang; Krista Laivuori; Andrea Bieder; Isabel Tapia Paez; Hong Jiao; Juha Kere
Journal:  J Neurodev Disord       Date:  2016-01-27       Impact factor: 4.025

7.  Pleiotropic Associations of Allelic Variants in a 2q22 Region with Risks of Major Human Diseases and Mortality.

Authors:  Alexander M Kulminski; Liang He; Irina Culminskaya; Yury Loika; Yelena Kernogitski; Konstantin G Arbeev; Elena Loiko; Liubov Arbeeva; Olivia Bagley; Matt Duan; Arseniy Yashkin; Fang Fang; Mikhail Kovtun; Svetlana V Ukraintseva; Deqing Wu; Anatoliy I Yashin
Journal:  PLoS Genet       Date:  2016-11-10       Impact factor: 5.917

8.  A 3.7 Mb deletion encompassing ZEB2 causes a novel polled and multisystemic syndrome in the progeny of a somatic mosaic bull.

Authors:  Aurélien Capitan; Aurélie Allais-Bonnet; Alain Pinton; Brigitte Marquant-Le Guienne; Daniel Le Bourhis; Cécile Grohs; Stéphan Bouet; Laëtitia Clément; Laura Salas-Cortes; Eric Venot; Stéphane Chaffaux; Bernard Weiss; Arnaud Delpeuch; Guy Noé; Marie-Noëlle Rossignol; Sarah Barbey; Dominique Dozias; Emilie Cobo; Harmonie Barasc; Aurélie Auguste; Maëlle Pannetier; Marie-Christine Deloche; Emeline Lhuilier; Olivier Bouchez; Diane Esquerré; Gérald Salin; Christophe Klopp; Cécile Donnadieu; Céline Chantry-Darmon; Hélène Hayes; Yves Gallard; Claire Ponsart; Didier Boichard; Eric Pailhoux
Journal:  PLoS One       Date:  2012-11-09       Impact factor: 3.240

9.  Integrating diverse datasets improves developmental enhancer prediction.

Authors:  Genevieve D Erwin; Nir Oksenberg; Rebecca M Truty; Dennis Kostka; Karl K Murphy; Nadav Ahituv; Katherine S Pollard; John A Capra
Journal:  PLoS Comput Biol       Date:  2014-06-26       Impact factor: 4.475

10.  ChromContact: A web tool for analyzing spatial contact of chromosomes from Hi-C data.

Authors:  Tetsuya Sato; Mikita Suyama
Journal:  BMC Genomics       Date:  2015-12-15       Impact factor: 3.969

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