Literature DB >> 22997420

Complete genome sequences of two Helicobacter pylori bacteriophages isolated from Japanese patients.

Jumpei Uchiyama1, Hiroaki Takeuchi, Shin-ichiro Kato, Iyo Takemura-Uchiyama, Takako Ujihara, Masanori Daibata, Shigenobu Matsuzaki.   

Abstract

Helicobacter pylori causes peptic ulcers and gastric cancer, which lead to significantly higher morbidity in Japan than elsewhere in the world. As bacteriophage (phage) and host bacteria coevolve, the study of H. pylori phages is important to extend understanding of the evolution and pathogenesis of H. pylori. Here we report two complete genome sequences of H. pylori phages KHP30 and KHP40, which were released spontaneously from the most pathogenic East Asian-type isolates from Japanese patients.

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Year:  2012        PMID: 22997420      PMCID: PMC3457131          DOI: 10.1128/JVI.01767-12

Source DB:  PubMed          Journal:  J Virol        ISSN: 0022-538X            Impact factor:   5.103


  12 in total

Review 1.  Helicobacter pylori and gastrointestinal tract adenocarcinomas.

Authors:  Richard M Peek; Martin J Blaser
Journal:  Nat Rev Cancer       Date:  2002-01       Impact factor: 60.716

2.  Bacteriophages in Helicobacter (Campylobacter) pylori.

Authors:  E N Schmid; G von Recklinghausen; R Ansorg
Journal:  J Med Microbiol       Date:  1990-06       Impact factor: 2.472

3.  [Isolation of a wild-type virulent phage of Helicobacter pylori and its simulated treatments of gastrointestinal Hp in vitro].

Authors:  Xue-qin Wan; Dong-sheng Tang; Ai-ping Liu; Shu-yi Tan; Wan-kelan Li; Jia Kuang; Hong-ming Li
Journal:  Nan Fang Yi Ke Da Xue Xue Bao       Date:  2011-02

4.  Antagonistic coevolution accelerates molecular evolution.

Authors:  Steve Paterson; Tom Vogwill; Angus Buckling; Rebecca Benmayor; Andrew J Spiers; Nicholas R Thomson; Mike Quail; Frances Smith; Danielle Walker; Ben Libberton; Andrew Fenton; Neil Hall; Michael A Brockhurst
Journal:  Nature       Date:  2010-02-24       Impact factor: 49.962

Review 5.  Helicobacter pylori: epidemiology and routes of transmission.

Authors:  L M Brown
Journal:  Epidemiol Rev       Date:  2000       Impact factor: 6.222

6.  Genome, integration, and transduction of a novel temperate phage of Helicobacter pylori.

Authors:  Cheng-Hung Luo; Pei-Yu Chiou; Chiou-Ying Yang; Nien-Tsung Lin
Journal:  J Virol       Date:  2012-06-13       Impact factor: 5.103

7.  CDD: a Conserved Domain Database for the functional annotation of proteins.

Authors:  Aron Marchler-Bauer; Shennan Lu; John B Anderson; Farideh Chitsaz; Myra K Derbyshire; Carol DeWeese-Scott; Jessica H Fong; Lewis Y Geer; Renata C Geer; Noreen R Gonzales; Marc Gwadz; David I Hurwitz; John D Jackson; Zhaoxi Ke; Christopher J Lanczycki; Fu Lu; Gabriele H Marchler; Mikhail Mullokandov; Marina V Omelchenko; Cynthia L Robertson; James S Song; Narmada Thanki; Roxanne A Yamashita; Dachuan Zhang; Naigong Zhang; Chanjuan Zheng; Stephen H Bryant
Journal:  Nucleic Acids Res       Date:  2010-11-24       Impact factor: 16.971

8.  Improved adsorption of an Enterococcus faecalis bacteriophage ΦEF24C with a spontaneous point mutation.

Authors:  Jumpei Uchiyama; Iyo Takemura; Miho Satoh; Shin-ichiro Kato; Takako Ujihara; Kazue Akechi; Shigenobu Matsuzaki; Masanori Daibata
Journal:  PLoS One       Date:  2011-10-25       Impact factor: 3.240

9.  Genome sequencing reveals a phage in Helicobacter pylori.

Authors:  Philippe Lehours; Filipa F Vale; Magnus K Bjursell; Ojar Melefors; Reza Advani; Steve Glavas; Julia Guegueniat; Etienne Gontier; Sabrina Lacomme; António Alves Matos; Armelle Menard; Francis Mégraud; Lars Engstrand; Anders F Andersson
Journal:  MBio       Date:  2011-11-15       Impact factor: 7.867

10.  GeneMark: web software for gene finding in prokaryotes, eukaryotes and viruses.

Authors:  John Besemer; Mark Borodovsky
Journal:  Nucleic Acids Res       Date:  2005-07-01       Impact factor: 16.971

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  18 in total

1.  Characterization of Helicobacter pylori bacteriophage KHP30.

Authors:  Jumpei Uchiyama; Hiroaki Takeuchi; Shin-ichiro Kato; Keiji Gamoh; Iyo Takemura-Uchiyama; Takako Ujihara; Masanori Daibata; Shigenobu Matsuzaki
Journal:  Appl Environ Microbiol       Date:  2013-03-08       Impact factor: 4.792

Review 2.  DNA transfer in the gastric pathogen Helicobacter pylori.

Authors:  Esther Fernandez-Gonzalez; Steffen Backert
Journal:  J Gastroenterol       Date:  2014-02-11       Impact factor: 7.527

Review 3.  Overview of the phytomedicine approaches against Helicobacter pylori.

Authors:  Filipa F Vale; Mónica Oleastro
Journal:  World J Gastroenterol       Date:  2014-05-21       Impact factor: 5.742

4.  Establishment of a reference panel of Helicobacter pylori strains for antimicrobial susceptibility testing.

Authors:  Kenji Yokota; Takako Osaki; Shunji Hayashi; Shin-Ichi Yokota; Hiroaki Takeuchi; Emiko Rimbara; Hinako Ojima; Toyotaka Sato; Hideo Yonezawa; Keigo Shibayama; Kengo Tokunaga; Shigeru Kamiya; Kazunari Murakami; Mototsugu Kato; Toshiro Sugiyama
Journal:  Helicobacter       Date:  2022-03-07       Impact factor: 5.182

5.  Sequence divergence and conservation in genomes of Helicobacter cetorum strains from a dolphin and a whale.

Authors:  Dangeruta Kersulyte; Mirko Rossi; Douglas E Berg
Journal:  PLoS One       Date:  2013-12-17       Impact factor: 3.240

6.  Comparative genomics of a Helicobacter pylori isolate from a Chinese Yunnan Naxi ethnic aborigine suggests high genetic divergence and phage insertion.

Authors:  Yuanhai You; Lihua He; Maojun Zhang; Jianzhong Zhang
Journal:  PLoS One       Date:  2015-03-23       Impact factor: 3.240

7.  Comparative analysis of prophage-like elements in Helicobacter sp. genomes.

Authors:  Xiangyu Fan; Yumei Li; Rong He; Qiang Li; Wenxing He
Journal:  PeerJ       Date:  2016-05-05       Impact factor: 2.984

8.  Dormant phages of Helicobacter pylori reveal distinct populations in Europe.

Authors:  F F Vale; J Vadivelu; M Oleastro; S Breurec; L Engstrand; T T Perets; F Mégraud; P Lehours
Journal:  Sci Rep       Date:  2015-09-21       Impact factor: 4.379

9.  Electron microscopic, genetic and protein expression analyses of Helicobacter acinonychis strains from a Bengal tiger.

Authors:  Nicole Tegtmeyer; Francisco Rivas Traverso; Manfred Rohde; Omar A Oyarzabal; Norbert Lehn; Wulf Schneider-Brachert; Richard L Ferrero; James G Fox; Douglas E Berg; Steffen Backert
Journal:  PLoS One       Date:  2013-08-05       Impact factor: 3.240

10.  HelicoBase: a Helicobacter genomic resource and analysis platform.

Authors:  Siew Woh Choo; Mia Yang Ang; Hanieh Fouladi; Shi Yang Tan; Cheuk Chuen Siow; Naresh V R Mutha; Hamed Heydari; Wei Yee Wee; Jamuna Vadivelu; Mun Fai Loke; Vellaya Rehvathy; Guat Jah Wong
Journal:  BMC Genomics       Date:  2014-07-16       Impact factor: 3.969

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