Literature DB >> 2299664

Hierarchy for 5' splice site preference determined in vivo.

A L Lear1, L P Eperon, I M Wheatley, I C Eperon.   

Abstract

The relationship between preferences among alternative 5' splice sites and their sequences has been investigated for 37 sequences by assessing their use in splicing relative to the 5' splice site of IVS-2 of rabbit beta-globin. There are strong correlations between the intrinsic strength of a 5' splice site and both the extent to which it resembles the consensus sequence and the calculated stability of its interactions with U1 small nuclear RNA. However, present methods of calculating either of the latter values do not allow predictions to be made of the relative preferences among a small number of sequences.

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Year:  1990        PMID: 2299664     DOI: 10.1016/0022-2836(90)90014-D

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  36 in total

1.  Reduction of target gene expression by a modified U1 snRNA.

Authors:  S A Beckley; P Liu; M L Stover; S I Gunderson; A C Lichtler; D W Rowe
Journal:  Mol Cell Biol       Date:  2001-04       Impact factor: 4.272

2.  Pseudoexon activation as a novel mechanism for disease resulting in atypical growth-hormone insensitivity.

Authors:  L A Metherell; S A Akker; P B Munroe; S J Rose; M Caulfield; M O Savage; S L Chew; A J Clark
Journal:  Am J Hum Genet       Date:  2001-07-20       Impact factor: 11.025

3.  A double reporter assay for detecting changes in the ratio of spliced and unspliced mRNA in mammalian cells.

Authors:  Md Talat Nasim; H M Chowdhury; I C Eperon
Journal:  Nucleic Acids Res       Date:  2002-10-15       Impact factor: 16.971

4.  cis-acting sequences involved in exon selection in the chicken beta-tropomyosin gene.

Authors:  M E Gallego; L Balvay; E Brody
Journal:  Mol Cell Biol       Date:  1992-12       Impact factor: 4.272

5.  Alternative splicing of a human alpha-tropomyosin muscle-specific exon: identification of determining sequences.

Authors:  I R Graham; M Hamshere; I C Eperon
Journal:  Mol Cell Biol       Date:  1992-09       Impact factor: 4.272

6.  In vivo splicing of the beta tropomyosin pre-mRNA: a role for branch point and donor site competition.

Authors:  D Libri; L Balvay; M Y Fiszman
Journal:  Mol Cell Biol       Date:  1992-07       Impact factor: 4.272

7.  Determinants of the inherent strength of human 5' splice sites.

Authors:  Xavier Roca; Ravi Sachidanandam; Adrian R Krainer
Journal:  RNA       Date:  2005-05       Impact factor: 4.942

8.  Beta-globin transcripts carrying a single intron with three adjacent nucleotides of 5' exon are efficiently spliced in vitro irrespective of intron position or surrounding exon sequences.

Authors:  A Mayeda; Y Ohshima
Journal:  Nucleic Acids Res       Date:  1990-08-25       Impact factor: 16.971

9.  Positive selection acting on splicing motifs reflects compensatory evolution.

Authors:  Shengdong Ke; Xiang H-F Zhang; Lawrence A Chasin
Journal:  Genome Res       Date:  2008-01-18       Impact factor: 9.043

10.  Sequences homologous to 5' splice sites are required for the inhibitory activity of papillomavirus late 3' untranslated regions.

Authors:  P A Furth; W T Choe; J H Rex; J C Byrne; C C Baker
Journal:  Mol Cell Biol       Date:  1994-08       Impact factor: 4.272

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