Literature DB >> 22990862

Dynamic evolution of venom proteins in squamate reptiles.

Nicholas R Casewell1, Gavin A Huttley, Wolfgang Wüster.   

Abstract

Phylogenetic analyses of toxin gene families have revolutionised our understanding of the origin and evolution of reptile venoms, leading to the current hypothesis that venom evolved once in squamate reptiles. However, because of a lack of homologous squamate non-toxin sequences, these conclusions rely on the implicit assumption that recruitments of protein families into venom are both rare and irreversible. Here we use sequences of homologous non-toxin proteins from two snake species to test these assumptions. Phylogenetic and ancestral-state analyses revealed frequent nesting of 'physiological' proteins within venom toxin clades, suggesting early ancestral recruitment into venom followed by reverse recruitment of toxins back to physiological roles. These results provide evidence that protein recruitment into venoms from physiological functions is not a one-way process, but dynamic, with reversal of function and/or co-expression of toxins in different tissues. This requires a major reassessment of our previous understanding of how animal venoms evolve.

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Year:  2012        PMID: 22990862     DOI: 10.1038/ncomms2065

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  44 in total

1.  A sliding window-based method to detect selective constraints in protein-coding genes and its application to RNA viruses.

Authors:  Mario A Fares; Santiago F Elena; Javier Ortiz; Andrés Moya; Eladio Barrio
Journal:  J Mol Evol       Date:  2002-11       Impact factor: 2.395

2.  Assembling an arsenal: origin and evolution of the snake venom proteome inferred from phylogenetic analysis of toxin sequences.

Authors:  B G Fry; W Wüster
Journal:  Mol Biol Evol       Date:  2004-03-10       Impact factor: 16.240

3.  Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level.

Authors:  Jianzhi Zhang; Rasmus Nielsen; Ziheng Yang
Journal:  Mol Biol Evol       Date:  2005-08-17       Impact factor: 16.240

4.  RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models.

Authors:  Alexandros Stamatakis
Journal:  Bioinformatics       Date:  2006-08-23       Impact factor: 6.937

Review 5.  Approaching the golden age of natural product pharmaceuticals from venom libraries: an overview of toxins and toxin-derivatives currently involved in therapeutic or diagnostic applications.

Authors:  Jay W Fox; Solange M T Serrano
Journal:  Curr Pharm Des       Date:  2007       Impact factor: 3.116

6.  Early evolution of the venom system in lizards and snakes.

Authors:  Bryan G Fry; Nicolas Vidal; Janette A Norman; Freek J Vonk; Holger Scheib; S F Ryan Ramjan; Sanjaya Kuruppu; Kim Fung; S Blair Hedges; Michael K Richardson; Wayne C Hodgson; Vera Ignjatovic; Robyn Summerhayes; Elazar Kochva
Journal:  Nature       Date:  2005-11-16       Impact factor: 49.962

7.  A likelihood approach for comparing synonymous and nonsynonymous nucleotide substitution rates, with application to the chloroplast genome.

Authors:  S V Muse; B S Gaut
Journal:  Mol Biol Evol       Date:  1994-09       Impact factor: 16.240

8.  Insights into the influence of priors in posterior mapping of discrete morphological characters: a case study in Annonaceae.

Authors:  Thomas L P Couvreur; Gerrit Gort; James E Richardson; Marc S M Sosef; Lars W Chatrou
Journal:  PLoS One       Date:  2010-05-10       Impact factor: 3.240

9.  Inventing an arsenal: adaptive evolution and neofunctionalization of snake venom phospholipase A2 genes.

Authors:  Vincent J Lynch
Journal:  BMC Evol Biol       Date:  2007-01-18       Impact factor: 3.260

10.  PyCogent: a toolkit for making sense from sequence.

Authors:  Rob Knight; Peter Maxwell; Amanda Birmingham; Jason Carnes; J Gregory Caporaso; Brett C Easton; Michael Eaton; Micah Hamady; Helen Lindsay; Zongzhi Liu; Catherine Lozupone; Daniel McDonald; Michael Robeson; Raymond Sammut; Sandra Smit; Matthew J Wakefield; Jeremy Widmann; Shandy Wikman; Stephanie Wilson; Hua Ying; Gavin A Huttley
Journal:  Genome Biol       Date:  2007       Impact factor: 13.583

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  35 in total

Review 1.  Quo vadis venomics? A roadmap to neglected venomous invertebrates.

Authors:  Bjoern Marcus von Reumont; Lahcen I Campbell; Ronald A Jenner
Journal:  Toxins (Basel)       Date:  2014-12-19       Impact factor: 4.546

2.  Conditions for Analysis of Native Protein Structures Using Uniform Field Drift Tube Ion Mobility Mass Spectrometry and Characterization of Stable Calibrants for TWIM-MS.

Authors:  Julian A Harrison; Celine Kelso; Tara L Pukala; Jennifer L Beck
Journal:  J Am Soc Mass Spectrom       Date:  2018-10-15       Impact factor: 3.109

3.  Scratching the Surface of an Itch: Molecular Evolution of Aculeata Venom Allergens.

Authors:  Kate Baumann; Daniel Dashevsky; Kartik Sunagar; Bryan Fry
Journal:  J Mol Evol       Date:  2018-07-31       Impact factor: 2.395

4.  Structural and molecular diversification of the Anguimorpha lizard mandibular venom gland system in the arboreal species Abronia graminea.

Authors:  Ivan Koludarov; Kartik Sunagar; Eivind A B Undheim; Timothy N W Jackson; Tim Ruder; Darryl Whitehead; Alejandro C Saucedo; G Roberto Mora; Alejandro C Alagon; Glenn King; Agostinho Antunes; Bryan G Fry
Journal:  J Mol Evol       Date:  2012-11-17       Impact factor: 2.395

5.  Taking a bite out of pain: snake venom can be both a curse and a cure when targeting acid sensing ion channels (ASICs) in the pain pathway.

Authors:  Chris Bladen
Journal:  Channels (Austin)       Date:  2013-02-28       Impact factor: 2.581

6.  Medically important differences in snake venom composition are dictated by distinct postgenomic mechanisms.

Authors:  Nicholas R Casewell; Simon C Wagstaff; Wolfgang Wüster; Darren A N Cook; Fiona M S Bolton; Sarah I King; Davinia Pla; Libia Sanz; Juan J Calvete; Robert A Harrison
Journal:  Proc Natl Acad Sci U S A       Date:  2014-06-09       Impact factor: 11.205

7.  Toxin-like neuropeptides in the sea anemone Nematostella unravel recruitment from the nervous system to venom.

Authors:  Maria Y Sachkova; Morani Landau; Joachim M Surm; Jason Macrander; Shir A Singer; Adam M Reitzel; Yehu Moran
Journal:  Proc Natl Acad Sci U S A       Date:  2020-10-15       Impact factor: 11.205

8.  Recruitment and diversification of an ecdysozoan family of neuropeptide hormones for black widow spider venom expression.

Authors:  Caryn McCowan; Jessica E Garb
Journal:  Gene       Date:  2013-12-05       Impact factor: 3.688

9.  The Burmese python genome reveals the molecular basis for extreme adaptation in snakes.

Authors:  Todd A Castoe; A P Jason de Koning; Kathryn T Hall; Daren C Card; Drew R Schield; Matthew K Fujita; Robert P Ruggiero; Jack F Degner; Juan M Daza; Wanjun Gu; Jacobo Reyes-Velasco; Kyle J Shaney; Jill M Castoe; Samuel E Fox; Alex W Poole; Daniel Polanco; Jason Dobry; Michael W Vandewege; Qing Li; Ryan K Schott; Aurélie Kapusta; Patrick Minx; Cédric Feschotte; Peter Uetz; David A Ray; Federico G Hoffmann; Robert Bogden; Eric N Smith; Belinda S W Chang; Freek J Vonk; Nicholas R Casewell; Christiaan V Henkel; Michael K Richardson; Stephen P Mackessy; Anne M Bronikowski; Anne M Bronikowsi; Mark Yandell; Wesley C Warren; Stephen M Secor; David D Pollock
Journal:  Proc Natl Acad Sci U S A       Date:  2013-12-02       Impact factor: 11.205

10.  The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system.

Authors:  Freek J Vonk; Nicholas R Casewell; Christiaan V Henkel; Alysha M Heimberg; Hans J Jansen; Ryan J R McCleary; Harald M E Kerkkamp; Rutger A Vos; Isabel Guerreiro; Juan J Calvete; Wolfgang Wüster; Anthony E Woods; Jessica M Logan; Robert A Harrison; Todd A Castoe; A P Jason de Koning; David D Pollock; Mark Yandell; Diego Calderon; Camila Renjifo; Rachel B Currier; David Salgado; Davinia Pla; Libia Sanz; Asad S Hyder; José M C Ribeiro; Jan W Arntzen; Guido E E J M van den Thillart; Marten Boetzer; Walter Pirovano; Ron P Dirks; Herman P Spaink; Denis Duboule; Edwina McGlinn; R Manjunatha Kini; Michael K Richardson
Journal:  Proc Natl Acad Sci U S A       Date:  2013-12-02       Impact factor: 11.205

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