Literature DB >> 22990429

Phylogeography and genetic diversity of East Asian Neolitsea sericea (Lauraceae) based on variations in chloroplast DNA sequences.

Jung-Hyun Lee1, Dong-Hyuk Lee, Byoung-Hee Choi.   

Abstract

Neolitsea sericea is an evergreen broad leaved tree in the warm-temperate regions of East Asia. This area is a hotspot for plant species richness and endemism caused by dynamic changes in land configuration during the Quaternary. However, the historical migration of such evergreen tree species is still poorly understood. In an attempt to reconstruct the phylogeographic history of N. sericea during the Quaternary, we identified the chloroplast DNA haplotypes of 287 individuals from 33 populations covering almost all of its geographic range. Analyses were based on sequence data from the trnL-F, psbC-trnS, and rps16 regions. Nine haplotypes were identified. The majority included ancestral types in the southwestern part of the main islands of Japan, with other region-specific haplotypes being found in populations on the Korean Peninsula, Taiwan (Isl. Lanyu), and elsewhere in Japan. A statistical parsimony network revealed two lineages derived from Japanese main islands. One was represented on the Korean Peninsula, the other on Isl. Lanyu. The current distribution of N. sericea has been shaped by colonization via land bridges. During the glacial periods, two primary, but separate migration routes were followed--from the southwestern part of the Japanese main islands to either the Korean Peninsula or Taiwan. In addition, we believe the Zhoushan populations were shaped by post-glacial processes through an ECS land bridge (East China Sea basin) from northern refugia that existed during the late Pleistocene.

Entities:  

Mesh:

Substances:

Year:  2012        PMID: 22990429     DOI: 10.1007/s10265-012-0519-1

Source DB:  PubMed          Journal:  J Plant Res        ISSN: 0918-9440            Impact factor:   2.629


  34 in total

1.  DnaSP version 3: an integrated program for molecular population genetics and molecular evolution analysis.

Authors:  J Rozas; R Rozas
Journal:  Bioinformatics       Date:  1999-02       Impact factor: 6.937

2.  Phylogeography of the component species of broad-leaved evergreen forests in Japan, based on chloroplast DNA variation.

Authors:  Kyoko Aoki; Takeshi Suzuki; Tsai-Wen Hsu; Noriaki Murakami
Journal:  J Plant Res       Date:  2004-01-10       Impact factor: 2.629

3.  Nuclear and chloroplast DNA phylogeography reveal two refuge areas with asymmetrical gene flow in a temperate walnut tree from East Asia.

Authors:  Wei-Ning Bai; Wan-Jin Liao; Da-Yong Zhang
Journal:  New Phytol       Date:  2010-08-17       Impact factor: 10.151

4.  Glacial refugia: hotspots but not melting pots of genetic diversity.

Authors:  Rémy J Petit; Itziar Aguinagalde; Jacques-Louis de Beaulieu; Christiane Bittkau; Simon Brewer; Rachid Cheddadi; Richard Ennos; Silvia Fineschi; Delphine Grivet; Martin Lascoux; Aparajita Mohanty; Gerhard Müller-Starck; Brigitte Demesure-Musch; Anna Palmé; Juan Pedro Martín; Sarah Rendell; Giovanni G Vendramin
Journal:  Science       Date:  2003-06-06       Impact factor: 47.728

5.  Comparative phylogeography and postglacial colonization routes in Europe.

Authors:  P Taberlet; L Fumagalli; A G Wust-Saucy; J F Cosson
Journal:  Mol Ecol       Date:  1998-04       Impact factor: 6.185

Review 6.  Plant molecular phylogeography in China and adjacent regions: Tracing the genetic imprints of Quaternary climate and environmental change in the world's most diverse temperate flora.

Authors:  Ying-Xiong Qiu; Cheng-Xing Fu; Hans Peter Comes
Journal:  Mol Phylogenet Evol       Date:  2011-02-01       Impact factor: 4.286

7.  The detection of disease clustering and a generalized regression approach.

Authors:  N Mantel
Journal:  Cancer Res       Date:  1967-02       Impact factor: 12.701

8.  Large-scale processes and the Asian bias in species diversity of temperate plants.

Authors:  H Qian; R E Ricklefs
Journal:  Nature       Date:  2000-09-14       Impact factor: 49.962

9.  Spatial genetic structure in a Neolitsea sericea population (Lauraceae).

Authors:  M G Chung; M Y Chung; G S Oh; B K Epperson
Journal:  Heredity (Edinb)       Date:  2000-11       Impact factor: 3.821

10.  Phylogeography of two East Asian species in Croomia (Stemonaceae) inferred from chloroplast DNA and ISSR fingerprinting variation.

Authors:  En-Xiang Li; Sun Yi; Ying-Xiong Qiu; Jiang-Tao Guo; Hans Peter Comes; Cheng-Xin Fu
Journal:  Mol Phylogenet Evol       Date:  2008-09-30       Impact factor: 4.286

View more
  12 in total

1.  Diversity hotspots of the laurel forest on Tenerife, Canary Islands: a phylogeographic study of Laurus and Ixanthus.

Authors:  Anja Betzin; Mike Thiv; Marcus A Koch
Journal:  Ann Bot       Date:  2016-07-06       Impact factor: 4.357

2.  Overview of Taiwan's indigenous ethnopharmacology in the perspective of traditional knowledge protection.

Authors:  Jing-jing Guo; Wei Pan; Mei-wan Chen; Chun-ming Wang; Yi-tao Wang
Journal:  Chin J Integr Med       Date:  2013-09-03       Impact factor: 1.978

3.  Phylogeography of East Asian Lespedeza buergeri (Fabaceae) based on chloroplast and nuclear ribosomal DNA sequence variations.

Authors:  Dong-Pil Jin; Jung-Hyun Lee; Bo Xu; Byoung-Hee Choi
Journal:  J Plant Res       Date:  2016-05-20       Impact factor: 2.629

4.  Phylogenetic relationship, biogeography, and conservation genetics of endangered Fraxinus chiisanensis (Oleaceae), endemic to South Korea.

Authors:  Changkyun Kim; Dong-Kap Kim; Hang Sun; Joo-Hwan Kim
Journal:  Plant Divers       Date:  2021-06-26

5.  Population demographic history of a temperate shrub, Rhododendron weyrichii (Ericaceae), on continental islands of Japan and South Korea.

Authors:  Watanabe Yoichi; Ichiro Tamaki; Shota Sakaguchi; Jong-Suk Song; Shin-Ichi Yamamoto; Nobuhiro Tomaru
Journal:  Ecol Evol       Date:  2016-11-21       Impact factor: 2.912

6.  The complete chloroplast genome of Cinnamomum camphora and its comparison with related Lauraceae species.

Authors:  Caihui Chen; Yongjie Zheng; Sian Liu; Yongda Zhong; Yanfang Wu; Jiang Li; Li-An Xu; Meng Xu
Journal:  PeerJ       Date:  2017-09-18       Impact factor: 2.984

7.  The distinct plastid genome structure of Maackia fauriei (Fabaceae: Papilionoideae) and its systematic implications for genistoids and tribe Sophoreae.

Authors:  In-Su Choi; Byoung-Hee Choi
Journal:  PLoS One       Date:  2017-04-11       Impact factor: 3.240

8.  Genetic variation and diversity in 199 Melilotus accessions based on a combination of 5 DNA sequences.

Authors:  Hongxiang Zhang; Fan Wu; Wenli Guo; Rong Bai; Zhuanzhuan Yan; Blaise Pascal Muvunyi; Qi Yan; Yufei Zhang; Xianfeng Yi; Jiyu Zhang
Journal:  PLoS One       Date:  2018-03-13       Impact factor: 3.240

9.  Comparative Mitogenomic Analysis Reveals Gene and Intron Dynamics in Rubiaceae and Intra-Specific Diversification in Damnacanthus indicus.

Authors:  Eun-Kyeong Han; Won-Bum Cho; Ichiro Tamaki; In-Su Choi; Jung-Hyun Lee
Journal:  Int J Mol Sci       Date:  2021-07-05       Impact factor: 5.923

10.  Comparative phylogeographic study of Hosta sieboldiana and Hosta albomarginata (Asparagaceae) in Japan.

Authors:  Sangryong Lee; Masayuki Maki
Journal:  Ecol Evol       Date:  2013-10-31       Impact factor: 2.912

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.