Rui Guo1, Shaul Mukamel, David R Klug. 1. Institute of Chemical Biology, Department of Chemistry, Imperial College London, London SW7 2AZ, UK.
Abstract
We demonstrate the use of a new vibrational transition density cube (VTDC) method for determining the geometry of complexes in a molecular liquid mixture from electron-vibration-vibration two-dimensional infrared (EVV 2DIR) spectra. The VTDC method was used to calculate the electrically-mediated intermolecular vibrational coupling and thereby the EVV 2DIR spectra. Using the 1:1 benzonitrile-phenylacetylene (BN-PA) liquid mixture as a test case, the new method leads to a distance of 3.60 Å between the interacting BN-PA pair, a much more accurate value than the distance previously obtained using a dipolar approximation for the electrical coupling. We also show that molecular dynamics simulations of the liquid mixture predict a modal geometry of complexation which agrees well with the geometry determined from the 2DIR data via VTDC analysis. We therefore conclude the combination of VTDC and EVV 2DIR data is a useful approach for the determination of the geometry of molecular complexes in the condensed phase.
We demonstrate the use of a new vibrational transition density cube (VTDC) method for determining the geometry of complexes in a molecular liquid mixture from electron-vibration-vibration two-dimensional infrared (pan class="Chemical">EVV 2DIR) spectra. The VTDC method was used to calculate the electrically-mediated intermolecular vibrational coupling and thereby the EVV 2DIR spectra. Using the 1:1 benzonitrile-phenylacetylene (BN-PA) liquid mixture as a test case, the new method leads to a distance of 3.60 Å between the interacting BN-PA pair, a much more accurate value than the distance previously obtained using a dipolar approximation for the electrical coupling. We also show that molecular dynamics simulations of the liquid mixture predict a modal geometry of complexation which agrees well with the geometry determined from the 2DIR data via VTDC analysis. We therefore conclude the combination of VTDC and EVV 2DIR data is a useful approach for the determination of the geometry of molecular complexes in the condensed phase.
Authors: Rui Guo; Margherita Miele; Elizabeth M Gardner; Frederic Fournier; Kathryn M Kornau; Ian R Gould; David R Klug Journal: Faraday Discuss Date: 2011 Impact factor: 4.008
Authors: Paul M Donaldson; Rui Guo; Frederic Fournier; Elizabeth M Gardner; Laura M C Barter; Chris J Barnett; Ian R Gould; David R Klug; D Jason Palmer; Keith R Willison Journal: J Chem Phys Date: 2007-09-21 Impact factor: 3.488
Authors: Frederic Fournier; Rui Guo; Elizabeth M Gardner; Paul M Donaldson; Christian Loeffeld; Ian R Gould; Keith R Willison; David R Klug Journal: Acc Chem Res Date: 2009-09-15 Impact factor: 22.384
Authors: Frédéric Fournier; Elizabeth M Gardner; Darek A Kedra; Paul M Donaldson; Rui Guo; Sarah A Butcher; Ian R Gould; Keith R Willison; David R Klug Journal: Proc Natl Acad Sci U S A Date: 2008-10-01 Impact factor: 11.205
Authors: Rui Guo; Frederic Fournier; Paul M Donaldson; Elizabeth M Gardner; Ian R Gould; David R Klug Journal: Phys Chem Chem Phys Date: 2009-07-22 Impact factor: 3.676
Authors: Frédéric Fournier; Elizabeth M Gardner; Rui Guo; Paul M Donaldson; Laura M C Barter; D Jason Palmer; Chris J Barnett; Keith R Willison; Ian R Gould; David R Klug Journal: Anal Biochem Date: 2007-11-13 Impact factor: 3.365