Literature DB >> 22989582

A hierarchical structure of cortical interneuron electrical diversity revealed by automated statistical analysis.

Shaul Druckmann1, Sean Hill, Felix Schürmann, Henry Markram, Idan Segev.   

Abstract

Although the diversity of cortical interneuron electrical properties is well recognized, the number of distinct electrical types (e-types) is still a matter of debate. Recently, descriptions of interneuron variability were standardized by multiple laboratories on the basis of a subjective classification scheme as set out by the Petilla convention (Petilla Interneuron Nomenclature Group, PING). Here, we present a quantitative, statistical analysis of a database of nearly five hundred neurons manually annotated according to the PING nomenclature. For each cell, 38 features were extracted from responses to suprathreshold current stimuli and statistically analyzed to examine whether cortical interneurons subdivide into e-types. We showed that the partitioning into different e-types is indeed the major component of data variability. The analysis suggests refining the PING e-type classification to be hierarchical, whereby most variability is first captured within a coarse subpartition, and then subsequently divided into finer subpartitions. The coarse partition matches the well-known partitioning of interneurons into fast spiking and adapting cells. Finer subpartitions match the burst, continuous, and delayed subtypes. Additionally, our analysis enabled the ranking of features according to their ability to differentiate among e-types. We showed that our quantitative e-type assignment is more than 90% accurate and manages to catch several human errors.

Entities:  

Keywords:  GABA; cell type; clustering; dimensionality reduction; supervised classification

Mesh:

Year:  2012        PMID: 22989582     DOI: 10.1093/cercor/bhs290

Source DB:  PubMed          Journal:  Cereb Cortex        ISSN: 1047-3211            Impact factor:   5.357


  28 in total

1.  Brain-wide analysis of electrophysiological diversity yields novel categorization of mammalian neuron types.

Authors:  Shreejoy J Tripathy; Shawn D Burton; Matthew Geramita; Richard C Gerkin; Nathaniel N Urban
Journal:  J Neurophysiol       Date:  2015-03-25       Impact factor: 2.714

Review 2.  The BRAIN Initiative Cell Census Consortium: Lessons Learned toward Generating a Comprehensive Brain Cell Atlas.

Authors:  Joseph R Ecker; Daniel H Geschwind; Arnold R Kriegstein; John Ngai; Pavel Osten; Damon Polioudakis; Aviv Regev; Nenad Sestan; Ian R Wickersham; Hongkui Zeng
Journal:  Neuron       Date:  2017-11-01       Impact factor: 17.173

3.  Distinct Heterosynaptic Plasticity in Fast Spiking and Non-Fast-Spiking Inhibitory Neurons in Rat Visual Cortex.

Authors:  Marina Chistiakova; Vladimir Ilin; Matvey Roshchin; Nicholas Bannon; Alexey Malyshev; Zoltán Kisvárday; Maxim Volgushev
Journal:  J Neurosci       Date:  2019-07-12       Impact factor: 6.167

Review 4.  Brain is modulated by neuronal plasticity during postnatal development.

Authors:  Masoumeh Kourosh-Arami; Nasrin Hosseini; Alireza Komaki
Journal:  J Physiol Sci       Date:  2021-11-17       Impact factor: 2.781

5.  Predicting the functional states of human iPSC-derived neurons with single-cell RNA-seq and electrophysiology.

Authors:  C Bardy; M van den Hurk; B Kakaradov; J A Erwin; B N Jaeger; R V Hernandez; T Eames; A A Paucar; M Gorris; C Marchand; R Jappelli; J Barron; A K Bryant; M Kellogg; R S Lasken; B P F Rutten; H W M Steinbusch; G W Yeo; F H Gage
Journal:  Mol Psychiatry       Date:  2016-10-04       Impact factor: 15.992

Review 6.  Towards the automatic classification of neurons.

Authors:  Rubén Armañanzas; Giorgio A Ascoli
Journal:  Trends Neurosci       Date:  2015-03-09       Impact factor: 13.837

7.  GABA-mediated tonic inhibition differentially modulates gain in functional subtypes of cortical interneurons.

Authors:  Alexander Bryson; Robert John Hatch; Bas-Jan Zandt; Christian Rossert; Samuel F Berkovic; Christopher A Reid; David B Grayden; Sean L Hill; Steven Petrou
Journal:  Proc Natl Acad Sci U S A       Date:  2020-01-23       Impact factor: 11.205

8.  Diversity and overlap of parvalbumin and somatostatin expressing interneurons in mouse presubiculum.

Authors:  Mérie Nassar; Jean Simonnet; Roxanne Lofredi; Ivan Cohen; Etienne Savary; Yuchio Yanagawa; Richard Miles; Desdemona Fricker
Journal:  Front Neural Circuits       Date:  2015-05-08       Impact factor: 3.492

9.  Automatic discovery of cell types and microcircuitry from neural connectomics.

Authors:  Eric Jonas; Konrad Kording
Journal:  Elife       Date:  2015-04-30       Impact factor: 8.140

10.  A stepwise neuron model fitting procedure designed for recordings with high spatial resolution: Application to layer 5 pyramidal cells.

Authors:  Tuomo Mäki-Marttunen; Geir Halnes; Anna Devor; Christoph Metzner; Anders M Dale; Ole A Andreassen; Gaute T Einevoll
Journal:  J Neurosci Methods       Date:  2017-10-07       Impact factor: 2.390

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