Literature DB >> 22988026

Using computational and mechanical models to study animal locomotion.

Laura A Miller1, Daniel I Goldman, Tyson L Hedrick, Eric D Tytell, Z Jane Wang, Jeannette Yen, Silas Alben.   

Abstract

Recent advances in computational methods have made realistic large-scale simulations of animal locomotion possible. This has resulted in numerous mathematical and computational studies of animal movement through fluids and over substrates with the purpose of better understanding organisms' performance and improving the design of vehicles moving through air and water and on land. This work has also motivated the development of improved numerical methods and modeling techniques for animal locomotion that is characterized by the interactions of fluids, substrates, and structures. Despite the large body of recent work in this area, the application of mathematical and numerical methods to improve our understanding of organisms in the context of their environment and physiology has remained relatively unexplored. Nature has evolved a wide variety of fascinating mechanisms of locomotion that exploit the properties of complex materials and fluids, but only recently are the mathematical, computational, and robotic tools available to rigorously compare the relative advantages and disadvantages of different methods of locomotion in variable environments. Similarly, advances in computational physiology have only recently allowed investigators to explore how changes at the molecular, cellular, and tissue levels might lead to changes in performance at the organismal level. In this article, we highlight recent examples of how computational, mathematical, and experimental tools can be combined to ultimately answer the questions posed in one of the grand challenges in organismal biology: "Integrating living and physical systems."

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Year:  2012        PMID: 22988026      PMCID: PMC3475976          DOI: 10.1093/icb/ics115

Source DB:  PubMed          Journal:  Integr Comp Biol        ISSN: 1540-7063            Impact factor:   3.326


  108 in total

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Authors:  Alana Sherman; Michael H Dickinson
Journal:  J Exp Biol       Date:  2003-01       Impact factor: 3.312

Review 2.  The aerodynamics of insect flight.

Authors:  Sanjay P Sane
Journal:  J Exp Biol       Date:  2003-12       Impact factor: 3.312

3.  Entrainment of leech swimming activity by the ventral stretch receptor.

Authors:  Xintian Yu; W Otto Friesen
Journal:  J Comp Physiol A Neuroethol Sens Neural Behav Physiol       Date:  2004-08-25       Impact factor: 1.836

4.  A new model for force generation by skeletal muscle, incorporating work-dependent deactivation.

Authors:  Thelma L Williams
Journal:  J Exp Biol       Date:  2010-02-15       Impact factor: 3.312

5.  Morphological diversity of medusan lineages constrained by animal-fluid interactions.

Authors:  John O Dabiri; Sean P Colin; John H Costello
Journal:  J Exp Biol       Date:  2007-06       Impact factor: 3.312

6.  Mechanisms underlying rhythmic locomotion: body-fluid interaction in undulatory swimming.

Authors:  J Chen; W O Friesen; T Iwasaki
Journal:  J Exp Biol       Date:  2011-02-15       Impact factor: 3.312

7.  Volumetric imaging of fish locomotion.

Authors:  Brooke E Flammang; George V Lauder; Daniel R Troolin; Tyson E Strand
Journal:  Biol Lett       Date:  2011-04-20       Impact factor: 3.703

8.  Kinematic, aerodynamic and anatomical mechanisms in the slow, maneuvering flight of pigeons

Authors: 
Journal:  J Exp Biol       Date:  1998-06       Impact factor: 3.312

9.  Flow structures and fluid transport for the hydromedusae Sarsia tubulosa and Aequorea victoria.

Authors:  Doug Lipinski; Kamran Mohseni
Journal:  J Exp Biol       Date:  2009-08       Impact factor: 3.312

10.  Wing and body motion during flight initiation in Drosophila revealed by automated visual tracking.

Authors:  Ebraheem I Fontaine; Francisco Zabala; Michael H Dickinson; Joel W Burdick
Journal:  J Exp Biol       Date:  2009-05       Impact factor: 3.312

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  9 in total

1.  A neuromechanical model for Drosophila larval crawling based on physical measurements.

Authors:  Xiyang Sun; Yingtao Liu; Chang Liu; Koichi Mayumi; Kohzo Ito; Akinao Nose; Hiroshi Kohsaka
Journal:  BMC Biol       Date:  2022-06-15       Impact factor: 7.364

2.  Swimming and defence: competing needs across ontogeny in armoured fishes (Agonidae).

Authors:  M A Kolmann; T Peixoto; J A Pfeiffenberger; A P Summers; C M Donatelli
Journal:  J R Soc Interface       Date:  2020-08-12       Impact factor: 4.118

3.  Extending the Functionality of Behavioural Change-Point Analysis with k-Means Clustering: A Case Study with the Little Penguin (Eudyptula minor).

Authors:  Jingjing Zhang; Kathleen M O'Reilly; George L W Perry; Graeme A Taylor; Todd E Dennis
Journal:  PLoS One       Date:  2015-04-29       Impact factor: 3.240

4.  The role of curvature feedback in the energetics and dynamics of lamprey swimming: A closed-loop model.

Authors:  Christina L Hamlet; Kathleen A Hoffman; Eric D Tytell; Lisa J Fauci
Journal:  PLoS Comput Biol       Date:  2018-08-17       Impact factor: 4.475

5.  Neuromusculoskeletal model that walks and runs across a speed range with a few motor control parameter changes based on the muscle synergy hypothesis.

Authors:  Shinya Aoi; Tomohiro Ohashi; Ryoko Bamba; Soichiro Fujiki; Daiki Tamura; Tetsuro Funato; Kei Senda; Yury Ivanenko; Kazuo Tsuchiya
Journal:  Sci Rep       Date:  2019-01-23       Impact factor: 4.379

6.  Red muscle activity in bluegill sunfish Lepomis macrochirus during forward accelerations.

Authors:  Margot A B Schwalbe; Alexandra L Boden; Tyler N Wise; Eric D Tytell
Journal:  Sci Rep       Date:  2019-05-30       Impact factor: 4.379

Review 7.  3D visualization processes for recreating and studying organismal form.

Authors:  Duncan J Irschick; Fredrik Christiansen; Neil Hammerschlag; Johnson Martin; Peter T Madsen; Jeanette Wyneken; Annabelle Brooks; Adrian Gleiss; Sabrina Fossette; Cameron Siler; Tony Gamble; Frank Fish; Ursula Siebert; Jaymin Patel; Zhan Xu; Evangelos Kalogerakis; Joshua Medina; Atreyi Mukherji; Mark Mandica; Savvas Zotos; Jared Detwiler; Blair Perot; George Lauder
Journal:  iScience       Date:  2022-08-04

8.  Ontogenetic changes in larval swimming and orientation of pre-competent sea urchin Arbacia punctulata in turbulence.

Authors:  Jeanette D Wheeler; Kit Yu Karen Chan; Erik J Anderson; Lauren S Mullineaux
Journal:  J Exp Biol       Date:  2016-05-01       Impact factor: 3.312

Review 9.  Measuring behavior across scales.

Authors:  Gordon J Berman
Journal:  BMC Biol       Date:  2018-02-23       Impact factor: 7.431

  9 in total

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