Literature DB >> 22987007

Orchestrating hi-fi annotations.

Patrick F Suthers1, Costas D Maranas.   

Abstract

By incorporating sequence homology and context associations, global probabilistic approaches to annotate genome-scale metabolic networks can substantially improve the accuracy of biochemical predictions, revealing potential functionality and directing experimental validation.

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Substances：

Year:  2012        PMID： 22987007     DOI： 10.1038/nchembio.1067

Source DB:  PubMed          Journal:  Nat Chem Biol        ISSN： 1552-4450            Impact factor:   15.040


  6 in total

Review 1.  Predicting protein function from sequence and structure.

Authors:  David Lee; Oliver Redfern; Christine Orengo
Journal:  Nat Rev Mol Cell Biol       Date:  2007-12       Impact factor: 94.444

2.  Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology.

Authors:  Peter D Karp; Suzanne M Paley; Markus Krummenacker; Mario Latendresse; Joseph M Dale; Thomas J Lee; Pallavi Kaipa; Fred Gilham; Aaron Spaulding; Liviu Popescu; Tomer Altman; Ian Paulsen; Ingrid M Keseler; Ron Caspi
Journal:  Brief Bioinform       Date:  2009-12-02       Impact factor: 11.622

3.  Global probabilistic annotation of metabolic networks enables enzyme discovery.

Authors:  Germán Plata; Tobias Fuhrer; Tzu-Lin Hsiao; Uwe Sauer; Dennis Vitkup
Journal:  Nat Chem Biol       Date:  2012-10       Impact factor: 15.040

4.  The MetaCyc Database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases.

Authors:  Ron Caspi; Hartmut Foerster; Carol A Fulcher; Pallavi Kaipa; Markus Krummenacker; Mario Latendresse; Suzanne Paley; Seung Y Rhee; Alexander G Shearer; Christophe Tissier; Thomas C Walk; Peifen Zhang; Peter D Karp
Journal:  Nucleic Acids Res       Date:  2007-10-27       Impact factor: 16.971

5.  KEGG for linking genomes to life and the environment.

Authors:  Minoru Kanehisa; Michihiro Araki; Susumu Goto; Masahiro Hattori; Mika Hirakawa; Masumi Itoh; Toshiaki Katayama; Shuichi Kawashima; Shujiro Okuda; Toshiaki Tokimatsu; Yoshihiro Yamanishi
Journal:  Nucleic Acids Res       Date:  2007-12-12       Impact factor: 16.971

6.  BRENDA, AMENDA and FRENDA the enzyme information system: new content and tools in 2009.

Authors:  Antje Chang; Maurice Scheer; Andreas Grote; Ida Schomburg; Dietmar Schomburg
Journal:  Nucleic Acids Res       Date:  2008-11-04       Impact factor: 16.971
  6 in total

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