Literature DB >> 22985089

Foxtail millet: a model crop for genetic and genomic studies in bioenergy grasses.

Charu Lata1, Sarika Gupta, Manoj Prasad.   

Abstract

Foxtail millet is one of the oldest domesticated diploid C4 Panicoid crops having a comparatively small genome size of approximately 515 Mb, short life cycle, and inbreeding nature. Its two species, Setaria italica (domesticated) and Setaria viridis (wild progenitor), have characteristics that classify them as excellent model systems to examine several aspects of architectural, evolutionary, and physiological importance in Panicoid grasses especially the biofuel crops such as switchgrass and napiergrass. Foxtail millet is a staple crop used extensively for food and fodder in parts of Asia and Africa. In its long history of cultivation, it has been adapted to arid and semi-arid areas of Asia, North Africa, South and North America. Foxtail millet has one of the largest collections of cultivated as well as wild-type germplasm rich with phenotypic variations and hence provides prospects for association mapping and allele-mining of elite and novel variants to be incorporated in crop improvement programs. Most of the foxtail millet accessions can be primarily abiotic stress tolerant particularly to drought and salinity, and therefore exploiting these agronomic traits can enhance its efficacy in marker-aided breeding as well as in genetic engineering for abiotic stress tolerance. In addition, the release of draft genome sequence of foxtail millet would be useful to the researchers worldwide in not only discerning the molecular basis of biomass production in biofuel crops and the methods to improve it, but also for the introgression of beneficial agronomically important characteristics in foxtail millet as well as in related Panicoid bioenergy grasses.

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Year:  2012        PMID: 22985089     DOI: 10.3109/07388551.2012.716809

Source DB:  PubMed          Journal:  Crit Rev Biotechnol        ISSN: 0738-8551            Impact factor:   8.429


  74 in total

1.  Investigation of the ASR family in foxtail millet and the role of ASR1 in drought/oxidative stress tolerance.

Authors:  Zhi-Juan Feng; Zhao-Shi Xu; Jiutong Sun; Lian-Cheng Li; Ming Chen; Guang-Xiao Yang; Guang-Yuan He; You-Zhi Ma
Journal:  Plant Cell Rep       Date:  2015-10-06       Impact factor: 4.570

2.  C2H2 type of zinc finger transcription factors in foxtail millet define response to abiotic stresses.

Authors:  Mehanathan Muthamilarasan; Venkata Suresh Bonthala; Awdhesh Kumar Mishra; Rohit Khandelwal; Yusuf Khan; Riti Roy; Manoj Prasad
Journal:  Funct Integr Genomics       Date:  2014-06-11       Impact factor: 3.410

3.  Population structure and association mapping of yield contributing agronomic traits in foxtail millet.

Authors:  Sarika Gupta; Kajal Kumari; Mehanathan Muthamilarasan; Swarup Kumar Parida; Manoj Prasad
Journal:  Plant Cell Rep       Date:  2014-01-12       Impact factor: 4.570

4.  Genome-wide identification, characterization, and expression analysis of superoxide dismutase (SOD) genes in foxtail millet (Setaria italica L.).

Authors:  Tao Wang; Hui Song; Baohong Zhang; Quanwei Lu; Zhen Liu; Shulin Zhang; Ruilin Guo; Cong Wang; Zilin Zhao; Jinrong Liu; Renhai Peng
Journal:  3 Biotech       Date:  2018-11-16       Impact factor: 2.406

Review 5.  Advances in Setaria genomics for genetic improvement of cereals and bioenergy grasses.

Authors:  Mehanathan Muthamilarasan; Manoj Prasad
Journal:  Theor Appl Genet       Date:  2014-09-20       Impact factor: 5.699

6.  A haplotype map of genomic variations and genome-wide association studies of agronomic traits in foxtail millet (Setaria italica).

Authors:  Guanqing Jia; Xuehui Huang; Hui Zhi; Yan Zhao; Qiang Zhao; Wenjun Li; Yang Chai; Lifang Yang; Kunyan Liu; Hengyun Lu; Chuanrang Zhu; Yiqi Lu; Congcong Zhou; Danlin Fan; Qijun Weng; Yunli Guo; Tao Huang; Lei Zhang; Tingting Lu; Qi Feng; Hangfei Hao; Hongkuan Liu; Ping Lu; Ning Zhang; Yuhui Li; Erhu Guo; Shujun Wang; Suying Wang; Jinrong Liu; Wenfei Zhang; Guoqiu Chen; Baojin Zhang; Wei Li; Yongfang Wang; Haiquan Li; Baohua Zhao; Jiayang Li; Xianmin Diao; Bin Han
Journal:  Nat Genet       Date:  2013-06-23       Impact factor: 38.330

Review 7.  Exploration of Genetic and Genomic Resources for Abiotic and Biotic Stress Tolerance in Pearl Millet.

Authors:  Radha Shivhare; Charu Lata
Journal:  Front Plant Sci       Date:  2017-01-23       Impact factor: 5.753

8.  FmTFDb: a foxtail millet transcription factors database for expediting functional genomics in millets.

Authors:  Venkata Suresh Bonthala; Mehanathan Muthamilarasan; Riti Roy; Manoj Prasad
Journal:  Mol Biol Rep       Date:  2014-07-09       Impact factor: 2.316

9.  Dehydration-responsive miRNAs in foxtail millet: genome-wide identification, characterization and expression profiling.

Authors:  Amita Yadav; Yusuf Khan; Manoj Prasad
Journal:  Planta       Date:  2015-12-16       Impact factor: 4.116

Review 10.  Advances in Agrobacterium tumefaciens-mediated genetic transformation of graminaceous crops.

Authors:  Roshan Kumar Singh; Manoj Prasad
Journal:  Protoplasma       Date:  2015-12-10       Impact factor: 3.356

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