Literature DB >> 22983707

A genomic regulatory element that directs assembly and function of immune-specific AP-1-IRF complexes.

Elke Glasmacher1, Smita Agrawal, Abraham B Chang, Theresa L Murphy, Wenwen Zeng, Bryan Vander Lugt, Aly A Khan, Maria Ciofani, Chauncey J Spooner, Sascha Rutz, Jason Hackney, Roza Nurieva, Carlos R Escalante, Wenjun Ouyang, Dan R Littman, Kenneth M Murphy, Harinder Singh.   

Abstract

Interferon regulatory factor 4 (IRF4) and IRF8 regulate B, T, macrophage, and dendritic cell differentiation. They are recruited to cis-regulatory Ets-IRF composite elements by PU.1 or Spi-B. How these IRFs target genes in most T cells is enigmatic given the absence of specific Ets partners. Chromatin immunoprecipitation sequencing in T helper 17 (T(H)17) cells reveals that IRF4 targets sequences enriched for activating protein 1 (AP-1)-IRF composite elements (AICEs) that are co-bound by BATF, an AP-1 factor required for T(H)17, B, and dendritic cell differentiation. IRF4 and BATF bind cooperatively to structurally divergent AICEs to promote gene activation and T(H)17 differentiation. The AICE motif directs assembly of IRF4 or IRF8 with BATF heterodimers and is also used in T(H)2, B, and dendritic cells. This genomic regulatory element and cognate factors appear to have evolved to integrate diverse immunomodulatory signals.

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Year:  2012        PMID: 22983707      PMCID: PMC5789805          DOI: 10.1126/science.1228309

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  27 in total

1.  Assembly requirements of PU.1-Pip (IRF-4) activator complexes: inhibiting function in vivo using fused dimers.

Authors:  A L Brass; A Q Zhu; H Singh
Journal:  EMBO J       Date:  1999-02-15       Impact factor: 11.598

2.  The development of inflammatory T(H)-17 cells requires interferon-regulatory factor 4.

Authors:  Anne Brüstle; Sylvia Heink; Magdalena Huber; Christine Rosenplänter; Christine Stadelmann; Philipp Yu; Enrico Arpaia; Tak W Mak; Thomas Kamradt; Michael Lohoff
Journal:  Nat Immunol       Date:  2007-08-05       Impact factor: 25.606

Review 3.  Roles of interferon-regulatory factors in T-helper-cell differentiation.

Authors:  Michael Lohoff; Tak W Mak
Journal:  Nat Rev Immunol       Date:  2005-02       Impact factor: 53.106

4.  A distal cis-regulatory element, CNS-9, controls NFAT1 and IRF4-mediated IL-10 gene activation in T helper cells.

Authors:  Choong-Gu Lee; Kyu-Ho Kang; Jae-Seon So; Ho-Keun Kwon; Jun-Seock Son; Min-Kyung Song; Anupama Sahoo; Hwa-Joong Yi; Ki-Chul Hwang; Toshifumi Matsuyama; Katsuyuki Yui; Sin-Hyeog Im
Journal:  Mol Immunol       Date:  2008-10-28       Impact factor: 4.407

5.  Molecular cloning of LSIRF, a lymphoid-specific member of the interferon regulatory factor family that binds the interferon-stimulated response element (ISRE).

Authors:  T Matsuyama; A Grossman; H W Mittrücker; D P Siderovski; F Kiefer; T Kawakami; C D Richardson; T Taniguchi; S K Yoshinaga; T W Mak
Journal:  Nucleic Acids Res       Date:  1995-06-25       Impact factor: 16.971

6.  Pip, a lymphoid-restricted IRF, contains a regulatory domain that is important for autoinhibition and ternary complex formation with the Ets factor PU.1.

Authors:  A L Brass; E Kehrli; C F Eisenbeis; U Storb; H Singh
Journal:  Genes Dev       Date:  1996-09-15       Impact factor: 11.361

7.  The orphan nuclear receptor RORgammat directs the differentiation program of proinflammatory IL-17+ T helper cells.

Authors:  Ivaylo I Ivanov; Brent S McKenzie; Liang Zhou; Carlos E Tadokoro; Alice Lepelley; Juan J Lafaille; Daniel J Cua; Dan R Littman
Journal:  Cell       Date:  2006-09-22       Impact factor: 41.582

8.  Analysis of interleukin-21-induced Prdm1 gene regulation reveals functional cooperation of STAT3 and IRF4 transcription factors.

Authors:  Hyokjoon Kwon; Danielle Thierry-Mieg; Jean Thierry-Mieg; Hyoung-Pyo Kim; Jangsuk Oh; Chainarong Tunyaplin; Sebastian Carotta; Colleen E Donovan; Matthew L Goldman; Prafullakumar Tailor; Keiko Ozato; David E Levy; Stephen L Nutt; Kathryn Calame; Warren J Leonard
Journal:  Immunity       Date:  2009-12-18       Impact factor: 31.745

9.  Interferon regulatory factor 4 (IRF4) interacts with NFATc2 to modulate interleukin 4 gene expression.

Authors:  Jyothi Rengarajan; Kerri A Mowen; Kathryn D McBride; Erica D Smith; Harinder Singh; Laurie H Glimcher
Journal:  J Exp Med       Date:  2002-04-15       Impact factor: 14.307

10.  The AP-1 transcription factor Batf controls T(H)17 differentiation.

Authors:  Barbara U Schraml; Kai Hildner; Wataru Ise; Wan-Ling Lee; Whitney A-E Smith; Ben Solomon; Gurmukh Sahota; Julia Sim; Ryuta Mukasa; Saso Cemerski; Robin D Hatton; Gary D Stormo; Casey T Weaver; John H Russell; Theresa L Murphy; Kenneth M Murphy
Journal:  Nature       Date:  2009-07-05       Impact factor: 49.962

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  178 in total

1.  miR-155 promotes T follicular helper cell accumulation during chronic, low-grade inflammation.

Authors:  Ruozhen Hu; Dominique A Kagele; Thomas B Huffaker; Marah C Runtsch; Margaret Alexander; Jin Liu; Erin Bake; Wei Su; Matthew A Williams; Dinesh S Rao; Thomas Möller; Gwenn A Garden; June L Round; Ryan M O'Connell
Journal:  Immunity       Date:  2014-10-16       Impact factor: 31.745

Review 2.  Molecular regulation of effector and memory T cell differentiation.

Authors:  John T Chang; E John Wherry; Ananda W Goldrath
Journal:  Nat Immunol       Date:  2014-12       Impact factor: 25.606

3.  Structural Studies of IRF4 Reveal a Flexible Autoinhibitory Region and a Compact Linker Domain.

Authors:  Soumya G Remesh; Vishaka Santosh; Carlos R Escalante
Journal:  J Biol Chem       Date:  2015-09-24       Impact factor: 5.157

4.  Regulation of bifurcating B cell trajectories by mutual antagonism between transcription factors IRF4 and IRF8.

Authors:  Heping Xu; Virendra K Chaudhri; Zhiguo Wu; Konstantinos Biliouris; Krista Dienger-Stambaugh; Yrina Rochman; Harinder Singh
Journal:  Nat Immunol       Date:  2015-10-05       Impact factor: 25.606

Review 5.  Making the case for chromatin profiling: a new tool to investigate the immune-regulatory landscape.

Authors:  Deborah R Winter; Steffen Jung; Ido Amit
Journal:  Nat Rev Immunol       Date:  2015-08-14       Impact factor: 53.106

6.  Haploinsufficiency of interferon regulatory factor 4 strongly protects against autoimmune diabetes in NOD mice.

Authors:  Satoru Akazawa; Masakazu Kobayashi; Genpei Kuriya; Ichiro Horie; Liping Yu; Hironori Yamasaki; Minoru Okita; Yuji Nagayama; Toshifumi Matsuyama; Masoud Akbari; Katsuyuki Yui; Atsushi Kawakami; Norio Abiru
Journal:  Diabetologia       Date:  2015-08-14       Impact factor: 10.122

Review 7.  Synchronizing transcriptional control of T cell metabolism and function.

Authors:  Kevin Man; Axel Kallies
Journal:  Nat Rev Immunol       Date:  2015-08-14       Impact factor: 53.106

8.  The oncogenic transcription factor IRF4 is regulated by a novel CD30/NF-κB positive feedback loop in peripheral T-cell lymphoma.

Authors:  Rebecca L Boddicker; N Sertac Kip; Xiaoming Xing; Yu Zeng; Zhi-Zhang Yang; Jeong-Heon Lee; Luciana L Almada; Sherine F Elsawa; Ryan A Knudson; Mark E Law; Rhett P Ketterling; Julie M Cunningham; Yanhong Wu; Matthew J Maurer; Megan M O'Byrne; James R Cerhan; Susan L Slager; Brian K Link; Julie C Porcher; Deanna M Grote; Diane F Jelinek; Ahmet Dogan; Stephen M Ansell; Martin E Fernandez-Zapico; Andrew L Feldman
Journal:  Blood       Date:  2015-04-01       Impact factor: 22.113

Review 9.  Regulatory T cells and immune tolerance in the intestine.

Authors:  Oliver J Harrison; Fiona M Powrie
Journal:  Cold Spring Harb Perspect Biol       Date:  2013-07-01       Impact factor: 10.005

10.  Th9 cell development requires a BATF-regulated transcriptional network.

Authors:  Rukhsana Jabeen; Ritobrata Goswami; Olufolakemi Awe; Aishwarya Kulkarni; Evelyn T Nguyen; Andrea Attenasio; Daniel Walsh; Matthew R Olson; Myung H Kim; Robert S Tepper; Jie Sun; Chang H Kim; Elizabeth J Taparowsky; Baohua Zhou; Mark H Kaplan
Journal:  J Clin Invest       Date:  2013-11       Impact factor: 14.808

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