Literature DB >> 22983678

Cross-species amplification of microsatellites reveals incongruence in the molecular variation and taxonomic limits of the Pilosocereus aurisetus group (Cactaceae).

Evandro M Moraes1, Manolo F Perez, Mariana F Téo, Daniela C Zappi, Nigel P Taylor, Marlon C Machado.   

Abstract

The Pilosocereus aurisetus group contains eight cactus species restricted to xeric habitats in eastern and central Brazil that have an archipelago-like distribution. In this study, 5-11 microsatellite markers previously designed for Pilosocereus machrisii were evaluated for cross-amplification and polymorphisms in ten populations from six species of the P. aurisetus group. The genotypic information was subsequently used to investigate the genetic relationships between the individuals, populations, and species analyzed. Only the Pmac101 locus failed to amplify in all of the six analyzed species, resulting in an 88 % success rate. The number of alleles per polymorphic locus ranged from 2 to 12, and the most successfully amplified loci showed at least one population with a larger number of alleles than were reported in the source species. The population relationships revealed clear genetic clustering in a neighbor-joining tree that was partially incongruent with the taxonomic limits between the P. aurisetus and P. machrisii species, a fact which parallels the problematic taxonomy of the P. aurisetus group. A Bayesian clustering analysis of the individual genotypes confirmed the observed taxonomic incongruence. These microsatellite markers provide a valuable resource for facilitating large-scale genetic studies on population structures, systematics and evolutionary history in this group.

Entities:  

Mesh:

Substances:

Year:  2012        PMID: 22983678     DOI: 10.1007/s10709-012-9678-1

Source DB:  PubMed          Journal:  Genetica        ISSN: 0016-6707            Impact factor:   1.082


  18 in total

1.  Inference of population structure using multilocus genotype data.

Authors:  J K Pritchard; M Stephens; P Donnelly
Journal:  Genetics       Date:  2000-06       Impact factor: 4.562

2.  Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study.

Authors:  G Evanno; S Regnaut; J Goudet
Journal:  Mol Ecol       Date:  2005-07       Impact factor: 6.185

3.  Microsatellite null alleles and estimation of population differentiation.

Authors:  Marie-Pierre Chapuis; Arnaud Estoup
Journal:  Mol Biol Evol       Date:  2006-12-05       Impact factor: 16.240

4.  CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure.

Authors:  Mattias Jakobsson; Noah A Rosenberg
Journal:  Bioinformatics       Date:  2007-05-07       Impact factor: 6.937

Review 5.  Cross-species transfer of nuclear microsatellite markers: potential and limitations.

Authors:  Thelma Barbará; Clarisse Palma-Silva; Gecele M Paggi; Fernanda Bered; Michael F Fay; Christian Lexer
Journal:  Mol Ecol       Date:  2007-09       Impact factor: 6.185

6.  Characterization of polymorphic microsatellite loci in Haageocereus (Trichocereeae, Cactaceae).

Authors:  Mónica Arakaki; Douglas E Soltis; Pamela S Soltis; Pablo R Speranza
Journal:  Am J Bot       Date:  2010-02-19       Impact factor: 3.844

7.  The neighbor-joining method: a new method for reconstructing phylogenetic trees.

Authors:  N Saitou; M Nei
Journal:  Mol Biol Evol       Date:  1987-07       Impact factor: 16.240

8.  Microsatellite 'evolution': directionality or bias?

Authors:  H Ellegren; C R Primmer; B C Sheldon
Journal:  Nat Genet       Date:  1995-12       Impact factor: 38.330

9.  Isolation, characterization, and cross-species amplification of polymorphic microsatellite markers for Pilosocereus machrisii (Cactaceae).

Authors:  Manolo F Perez; Mariana F Téo; Daniela C Zappi; Nigel P Taylor; Evandro M Moraes
Journal:  Am J Bot       Date:  2011-08       Impact factor: 3.844

10.  Characterization of microsatellite loci for the critically endangered cactus Ariocarpus bravoanus.

Authors:  S L Hughes; V M Rodriguez; B D Hardesty; Rolando T Bárcenas Luna; Héctor M Hernández; R M Robson; J A Hawkins
Journal:  Mol Ecol Resour       Date:  2008-06-28       Impact factor: 7.090

View more
  3 in total

1.  Phylogenetic and morphological analyses of Pilosocereus leucocephalus group s.s. (Cactaceae) reveal new taxonomical implications.

Authors:  Daniel Franco-Estrada; Duniel Barrios; Cristian R Cervantes; Xochitl Granados-Aguilar; Salvador Arias
Journal:  J Plant Res       Date:  2022-03-19       Impact factor: 3.000

2.  Weak population structure and no genetic erosion in Pilosocereus aureispinus: A microendemic and threatened cactus species from eastern Brazil.

Authors:  Gulzar Khan; Paulianny M Ribeiro; Isabel A S Bonatelli; Manolo F Perez; Fernando F Franco; Evandro M Moraes
Journal:  PLoS One       Date:  2018-04-09       Impact factor: 3.240

Review 3.  Evolutionary Genetics of Cacti: Research Biases, Advances and Prospects.

Authors:  Fernando Faria Franco; Danilo Trabuco Amaral; Isabel A S Bonatelli; Monique Romeiro-Brito; Milena Cardoso Telhe; Evandro Marsola Moraes
Journal:  Genes (Basel)       Date:  2022-03-01       Impact factor: 4.096

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.