Literature DB >> 22969676

N-(2-Bromo-benz-yl)cinchoninium bromide.

Agnieszka Skórska-Stania, Magdalena Jezierska-Zięba, Barbara Kąkol, Michał Fedoryński, Barbara J Oleksyn.   

Abstract

The title compound {systematic name: 1-(2-bromo-benz-yl)-5-ethenyl-2-[hy-droxy(quinolin-4-yl)meth-yl]-1-aza-bicyclo-[2.2.2]octan-1-ium bromide}, C(26)H(28)BrN(2)O(+)·Br(-), is a chiral quater-nary ammonium salt of one of the Cinchona alkaloids. The planes of the quinoline and of the bromo-benzyl substituent are inclined to one another by 9.11 (9)°. A weak intra-molecular C-H⋯O hydrogen bond occurs. The crystal structure features strong O-H⋯Br hydrogen bonds and weak C-H⋯Br inter-actions.

Entities:  

Year:  2012        PMID: 22969676      PMCID: PMC3435830          DOI: 10.1107/S160053681203646X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the structure of cinchonine base and its derivatives, see: Oleksyn et al. (1979 ▶); Dolling et al. (1984 ▶). For crystal structures of other selected Cinchona alkaloid derivatives with bulky substituents at the quinuclidine nitro­gen atom, see: Song et al. (2005 ▶); Kawai et al. (2009 ▶); Jew et al. (2002 ▶); Matoba et al. (2010 ▶). For the effect of the substituent on the activity of the title catalyst, see: Jezierska-Zięba et al. (2010 ▶).

Experimental

Crystal data

C26H28BrN2OBr M = 544.30 Orthorhombic, a = 7.2313 (1) Å b = 16.2545 (1) Å c = 20.2466 (2) Å V = 2379.81 (4) Å3 Z = 4 Mo Kα radiation μ = 3.43 mm−1 T = 295 K 0.2 × 0.15 × 0.1 mm

Data collection

Nonius KappaCCD diffractometer Absorption correction: multi-scan (DENZO and SCALEPACK; Otwinowski & Minor 1997 ▶) T min = 0.547, T max = 0.726 64183 measured reflections 5437 independent reflections 4879 reflections with I > 2σ(I) R int = 0.039

Refinement

R[F 2 > 2σ(F 2)] = 0.034 wR(F 2) = 0.071 S = 1.06 5437 reflections 283 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.40 e Å−3 Δρmin = −0.42 e Å−3 Absolute structure: Flack (1983 ▶), 2320 Friedel pairs Flack parameter: 0.020 (8) Data collection: COLLECT (Nonius, 1998 ▶); cell refinement: SCALEPACK; data reduction: DENZO (Otwinowski & Minor, 1997 ▶) and SCALEPACK (Otwinowski & Minor, 1997 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S160053681203646X/rk2374sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681203646X/rk2374Isup2.hkl Supplementary material file. DOI: 10.1107/S160053681203646X/rk2374Isup3.mol Supplementary material file. DOI: 10.1107/S160053681203646X/rk2374Isup4.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report Enhanced figure: interactive version of Fig. 3
C26H28BrN2O+·BrDx = 1.519 Mg m3
Mr = 544.30Melting point: 430 K
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 3135 reflections
a = 7.2313 (1) Åθ = 1.0–27.5°
b = 16.2545 (1) ŵ = 3.43 mm1
c = 20.2466 (2) ÅT = 295 K
V = 2379.81 (4) Å3Prism, colourless
Z = 40.2 × 0.15 × 0.1 mm
F(000) = 1104
Nonius KappaCCD diffractometer5437 independent reflections
Radiation source: fine–focus sealed tube4879 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.039
Detector resolution: 9 pixels mm-1θmax = 27.5°, θmin = 2.7°
CCD rotation images, thick slices scansh = −9→9
Absorption correction: multi-scan (DENZO and SCALEPACK; Otwinowski & Minor 1997)k = −20→21
Tmin = 0.547, Tmax = 0.726l = −26→26
64183 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.034H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.071w = 1/[σ2(Fo2) + (0.023P)2 + 1.5842P] where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max = 0.001
5437 reflectionsΔρmax = 0.40 e Å3
283 parametersΔρmin = −0.42 e Å3
0 restraintsAbsolute structure: Flack (1983), 2320 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.020 (8)
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
xyzUiso*/Ueq
C1B0.1042 (4)0.78679 (16)0.82411 (13)0.0396 (6)
H1BA−0.02470.77130.81940.048*
H1BB0.17760.73740.81820.048*
C2B0.1337 (4)0.81793 (16)0.89340 (13)0.0393 (6)
C3B−0.0039 (4)0.85398 (19)0.93115 (14)0.0508 (7)
C4B0.0243 (5)0.8774 (2)0.99629 (16)0.0647 (9)
H4BA−0.07050.90171.02040.078*
C5B0.1937 (5)0.8641 (3)1.02470 (16)0.0701 (11)
H5BA0.21480.88041.06810.084*
C6B0.3319 (5)0.8269 (2)0.98952 (16)0.0643 (9)
H6BA0.44610.81741.00920.077*
C7B0.3019 (4)0.8036 (2)0.92451 (15)0.0497 (7)
H7BA0.39640.77770.90120.06*
C20.0284 (4)0.92222 (15)0.77020 (13)0.0426 (6)
H2A0.02580.94480.81460.051*
H2B−0.09670.90640.75840.051*
C30.0976 (5)0.98821 (17)0.72183 (15)0.0514 (8)
H30.1671.02920.74720.062*
C40.2313 (5)0.94693 (18)0.67445 (15)0.0528 (7)
H40.26260.98440.63820.063*
C50.4058 (4)0.92317 (19)0.71277 (18)0.0577 (8)
H5A0.47490.97230.72430.069*
H5B0.4840.88860.68550.069*
C60.3508 (4)0.87670 (18)0.77580 (14)0.0453 (7)
H6A0.43270.83020.78240.054*
H6B0.36130.91280.81380.054*
C70.1435 (5)0.86819 (19)0.64724 (13)0.0534 (8)
H7A0.21320.84890.60930.064*
H7B0.01780.87930.63310.064*
C80.1433 (4)0.80217 (16)0.70143 (13)0.0395 (6)
H80.25810.77060.69670.047*
C9−0.0178 (4)0.74086 (17)0.69529 (13)0.0427 (6)
H90.00010.6960.7270.051*
C10−0.0719 (7)1.0313 (2)0.6916 (2)0.0775 (11)
H10−0.17671.0330.71820.093*
C11−0.0879 (8)1.0640 (3)0.6368 (2)0.1018 (16)
H11A0.01161.06450.60770.122*
H11B−0.19951.08810.62470.122*
C14−0.1798 (7)0.6905 (3)0.52105 (18)0.0800 (13)
H14−0.28470.70150.4960.096*
C15−0.1729 (6)0.7227 (2)0.58609 (17)0.0644 (9)
H15−0.26840.75570.60180.077*
C16−0.0262 (5)0.70516 (17)0.62510 (14)0.0487 (7)
C170.1183 (5)0.65446 (18)0.59904 (14)0.0508 (7)
C180.2769 (5)0.62946 (19)0.63382 (17)0.0600 (9)
H180.28820.6430.67830.072*
C190.4150 (6)0.5857 (2)0.6038 (2)0.0775 (11)
H190.52040.57120.62740.093*
C200.3970 (7)0.5627 (3)0.5368 (2)0.0876 (14)
H200.49140.53350.51630.105*
C210.2452 (8)0.5826 (2)0.50268 (19)0.0803 (12)
H210.23510.56640.45880.096*
C220.1005 (6)0.6277 (2)0.53171 (16)0.0637 (10)
Br2−0.24868 (5)0.86541 (3)0.898389 (19)0.07787 (13)
N10.1527 (3)0.84692 (14)0.76881 (10)0.0357 (5)
N13−0.0494 (6)0.6463 (2)0.49364 (14)0.0778 (9)
O12−0.1842 (3)0.78260 (13)0.71029 (12)0.0520 (5)
H12−0.255 (6)0.750 (2)0.7269 (17)0.062*
Br10.55118 (5)0.661427 (19)0.789365 (17)0.05560 (9)
U11U22U33U12U13U23
C1B0.0480 (16)0.0380 (14)0.0328 (13)0.0005 (11)0.0036 (11)0.0000 (11)
C2B0.0437 (14)0.0398 (15)0.0344 (13)−0.0034 (11)0.0035 (12)−0.0023 (11)
C3B0.0480 (16)0.0590 (19)0.0454 (15)−0.0050 (13)0.0062 (12)−0.0073 (13)
C4B0.068 (2)0.082 (2)0.0445 (16)−0.0092 (19)0.0197 (16)−0.0180 (16)
C5B0.083 (3)0.090 (3)0.0379 (16)−0.018 (2)0.0009 (16)−0.0157 (17)
C6B0.059 (2)0.086 (3)0.0477 (17)−0.008 (2)−0.0115 (16)−0.0009 (18)
C7B0.0453 (17)0.0621 (18)0.0418 (15)0.0010 (14)0.0006 (12)0.0023 (14)
C20.0485 (15)0.0354 (13)0.0441 (15)0.0065 (12)0.0015 (12)−0.0036 (10)
C30.065 (2)0.0362 (13)0.0526 (18)−0.0020 (13)0.0017 (15)0.0007 (12)
C40.069 (2)0.0422 (15)0.0477 (16)−0.0098 (16)0.0070 (16)0.0069 (13)
C50.0567 (19)0.0487 (16)0.068 (2)−0.0120 (13)0.0198 (17)−0.0014 (16)
C60.0425 (14)0.0407 (14)0.0527 (17)−0.0032 (12)0.0038 (13)−0.0053 (13)
C70.080 (2)0.0486 (16)0.0316 (13)−0.0104 (17)0.0094 (14)0.0025 (12)
C80.0498 (15)0.0366 (13)0.0320 (13)−0.0022 (11)0.0054 (12)−0.0038 (11)
C90.0507 (16)0.0405 (13)0.0369 (14)−0.0038 (12)−0.0004 (12)−0.0043 (11)
C100.105 (3)0.055 (2)0.072 (2)0.013 (2)0.007 (2)0.0189 (17)
C110.101 (4)0.117 (4)0.088 (3)0.040 (3)−0.004 (3)0.014 (3)
C140.109 (3)0.082 (3)0.049 (2)0.001 (2)−0.027 (2)−0.0106 (19)
C150.077 (2)0.069 (2)0.0479 (18)0.0013 (19)−0.0131 (17)−0.0070 (16)
C160.067 (2)0.0406 (14)0.0389 (14)−0.0069 (14)−0.0031 (14)−0.0022 (11)
C170.075 (2)0.0375 (14)0.0400 (14)−0.0082 (14)0.0042 (14)−0.0044 (13)
C180.081 (3)0.0424 (16)0.0566 (18)−0.0025 (18)0.0016 (17)−0.0104 (14)
C190.085 (3)0.059 (2)0.089 (3)0.011 (2)0.005 (2)−0.014 (2)
C200.113 (4)0.068 (2)0.082 (3)0.015 (3)0.031 (3)−0.017 (2)
C210.122 (4)0.063 (2)0.056 (2)0.006 (3)0.015 (3)−0.0161 (18)
C220.100 (3)0.0491 (17)0.0424 (16)−0.0123 (19)0.0058 (17)−0.0077 (14)
Br20.04306 (16)0.1171 (3)0.0734 (2)0.0077 (2)0.01098 (18)−0.0085 (2)
N10.0380 (11)0.0334 (11)0.0357 (11)−0.0020 (10)0.0027 (9)−0.0019 (9)
N130.115 (3)0.073 (2)0.0450 (14)−0.002 (2)−0.0107 (18)−0.0150 (14)
O120.0477 (11)0.0548 (12)0.0536 (12)−0.0049 (9)0.0028 (11)−0.0070 (11)
Br10.05621 (17)0.04800 (15)0.06259 (17)0.00830 (15)0.00511 (16)0.00209 (15)
C1B—C2B1.507 (4)C7—C81.535 (4)
C1B—N11.527 (3)C7—H7A0.97
C1B—H1BA0.97C7—H7B0.97
C1B—H1BB0.97C8—C91.538 (4)
C2B—C3B1.385 (4)C8—N11.548 (3)
C2B—C7B1.390 (4)C8—H80.98
C3B—C4B1.388 (4)C9—O121.414 (4)
C3B—Br21.899 (3)C9—C161.536 (4)
C4B—C5B1.370 (5)C9—H90.98
C4B—H4BA0.93C10—C111.235 (6)
C5B—C6B1.368 (5)C10—H100.93
C5B—H5BA0.93C11—H11A0.93
C6B—C7B1.387 (4)C11—H11B0.93
C6B—H6BA0.93C14—N131.309 (5)
C7B—H7BA0.93C14—C151.418 (5)
C2—N11.519 (3)C14—H140.93
C2—C31.536 (4)C15—C161.353 (5)
C2—H2A0.97C15—H150.93
C2—H2B0.97C16—C171.432 (5)
C3—C41.518 (4)C17—C181.406 (5)
C3—C101.539 (5)C17—C221.437 (4)
C3—H30.98C18—C191.369 (5)
C4—C51.531 (5)C18—H180.93
C4—C71.531 (4)C19—C201.413 (6)
C4—H40.98C19—H190.93
C5—C61.535 (4)C20—C211.336 (7)
C5—H5A0.97C20—H200.93
C5—H5B0.97C21—C221.405 (6)
C6—N11.519 (3)C21—H210.93
C6—H6A0.97C22—N131.364 (5)
C6—H6B0.97O12—H120.81 (4)
C2B—C1B—N1115.8 (2)C4—C7—H7B109.9
C2B—C1B—H1BA108.3C8—C7—H7B109.9
N1—C1B—H1BA108.3H7A—C7—H7B108.3
C2B—C1B—H1BB108.3C7—C8—C9113.3 (3)
N1—C1B—H1BB108.3C7—C8—N1107.6 (2)
H1BA—C1B—H1BB107.4C9—C8—N1114.1 (2)
C3B—C2B—C7B116.8 (3)C7—C8—H8107.1
C3B—C2B—C1B123.7 (3)C9—C8—H8107.1
C7B—C2B—C1B119.3 (3)N1—C8—H8107.1
C2B—C3B—C4B122.3 (3)O12—C9—C16110.3 (2)
C2B—C3B—Br2121.2 (2)O12—C9—C8108.4 (2)
C4B—C3B—Br2116.3 (2)C16—C9—C8110.5 (2)
C5B—C4B—C3B119.2 (3)O12—C9—H9109.2
C5B—C4B—H4BA120.4C16—C9—H9109.2
C3B—C4B—H4BA120.4C8—C9—H9109.2
C4B—C5B—C6B120.3 (3)C11—C10—C3128.9 (5)
C4B—C5B—H5BA119.9C11—C10—H10115.6
C6B—C5B—H5BA119.9C3—C10—H10115.6
C5B—C6B—C7B120.0 (3)C10—C11—H11A120
C5B—C6B—H6BA120C10—C11—H11B120
C7B—C6B—H6BA120H11A—C11—H11B120
C6B—C7B—C2B121.4 (3)N13—C14—C15124.8 (4)
C6B—C7B—H7BA119.3N13—C14—H14117.6
C2B—C7B—H7BA119.3C15—C14—H14117.6
N1—C2—C3111.0 (2)C16—C15—C14119.4 (4)
N1—C2—H2A109.4C16—C15—H15120.3
C3—C2—H2A109.4C14—C15—H15120.3
N1—C2—H2B109.4C15—C16—C17118.6 (3)
C3—C2—H2B109.4C15—C16—C9119.4 (3)
H2A—C2—H2B108C17—C16—C9122.0 (3)
C4—C3—C2107.6 (2)C18—C17—C16125.3 (3)
C4—C3—C10117.2 (3)C18—C17—C22117.4 (3)
C2—C3—C10108.2 (3)C16—C17—C22117.3 (3)
C4—C3—H3107.9C19—C18—C17121.5 (3)
C2—C3—H3107.9C19—C18—H18119.2
C10—C3—H3107.9C17—C18—H18119.2
C3—C4—C5108.4 (3)C18—C19—C20119.8 (4)
C3—C4—C7109.4 (3)C18—C19—H19120.1
C5—C4—C7108.3 (3)C20—C19—H19120.1
C3—C4—H4110.2C21—C20—C19120.5 (4)
C5—C4—H4110.2C21—C20—H20119.7
C7—C4—H4110.2C19—C20—H20119.7
C4—C5—C6109.4 (2)C20—C21—C22121.4 (4)
C4—C5—H5A109.8C20—C21—H21119.3
C6—C5—H5A109.8C22—C21—H21119.3
C4—C5—H5B109.8N13—C22—C21118.1 (3)
C6—C5—H5B109.8N13—C22—C17122.7 (3)
H5A—C5—H5B108.2C21—C22—C17119.2 (4)
N1—C6—C5108.9 (2)C2—N1—C6107.4 (2)
N1—C6—H6A109.9C2—N1—C1B111.48 (19)
C5—C6—H6A109.9C6—N1—C1B110.6 (2)
N1—C6—H6B109.9C2—N1—C8111.7 (2)
C5—C6—H6B109.9C6—N1—C8105.9 (2)
H6A—C6—H6B108.3C1B—N1—C8109.60 (19)
C4—C7—C8109.1 (2)C14—N13—C22117.1 (3)
C4—C7—H7A109.9C9—O12—H12108 (3)
C8—C7—H7A109.9
N1—C1B—C2B—C3B94.4 (3)O12—C9—C16—C17−175.1 (3)
N1—C1B—C2B—C7B−91.9 (3)C8—C9—C16—C1765.0 (3)
C7B—C2B—C3B—C4B2.0 (5)C15—C16—C17—C18−178.6 (3)
C1B—C2B—C3B—C4B175.8 (3)C9—C16—C17—C182.3 (5)
C7B—C2B—C3B—Br2−172.6 (2)C15—C16—C17—C222.1 (4)
C1B—C2B—C3B—Br21.3 (4)C9—C16—C17—C22−177.0 (3)
C2B—C3B—C4B—C5B−0.4 (5)C16—C17—C18—C19−175.3 (3)
Br2—C3B—C4B—C5B174.4 (3)C22—C17—C18—C194.1 (5)
C3B—C4B—C5B—C6B−1.1 (6)C17—C18—C19—C20−1.9 (6)
C4B—C5B—C6B—C7B0.9 (6)C18—C19—C20—C21−0.6 (7)
C5B—C6B—C7B—C2B0.8 (6)C19—C20—C21—C220.8 (7)
C3B—C2B—C7B—C6B−2.2 (5)C20—C21—C22—N13179.5 (4)
C1B—C2B—C7B—C6B−176.3 (3)C20—C21—C22—C171.5 (6)
N1—C2—C3—C416.7 (3)C18—C17—C22—N13178.3 (3)
N1—C2—C3—C10144.2 (3)C16—C17—C22—N13−2.3 (5)
C2—C3—C4—C5−68.9 (3)C18—C17—C22—C21−3.8 (5)
C10—C3—C4—C5169.1 (3)C16—C17—C22—C21175.6 (3)
C2—C3—C4—C749.0 (3)C3—C2—N1—C649.6 (3)
C10—C3—C4—C7−73.0 (3)C3—C2—N1—C1B170.9 (2)
C3—C4—C5—C649.8 (3)C3—C2—N1—C8−66.1 (3)
C7—C4—C5—C6−68.8 (3)C5—C6—N1—C2−68.9 (3)
C4—C5—C6—N117.4 (3)C5—C6—N1—C1B169.2 (2)
C3—C4—C7—C8−73.6 (3)C5—C6—N1—C850.5 (3)
C5—C4—C7—C844.4 (3)C2B—C1B—N1—C2−64.3 (3)
C4—C7—C8—C9150.5 (3)C2B—C1B—N1—C655.2 (3)
C4—C7—C8—N123.3 (3)C2B—C1B—N1—C8171.6 (2)
C7—C8—C9—O12−69.4 (3)C7—C8—N1—C241.8 (3)
N1—C8—C9—O1254.2 (3)C9—C8—N1—C2−84.9 (3)
C7—C8—C9—C1651.5 (3)C7—C8—N1—C6−74.9 (3)
N1—C8—C9—C16175.1 (2)C9—C8—N1—C6158.5 (2)
C4—C3—C10—C11−29.2 (6)C7—C8—N1—C1B165.8 (2)
C2—C3—C10—C11−150.9 (5)C9—C8—N1—C1B39.1 (3)
N13—C14—C15—C16−2.8 (7)C15—C14—N13—C222.6 (6)
C14—C15—C16—C170.2 (5)C21—C22—N13—C14−177.9 (4)
C14—C15—C16—C9179.4 (3)C17—C22—N13—C140.0 (6)
O12—C9—C16—C155.8 (4)H12—O12—C9—C8−149 (3)
C8—C9—C16—C15−114.0 (3)
D—H···AD—HH···AD···AD—H···A
O12—H12···Br1i0.81 (4)2.38 (4)3.179 (2)173 (3)
C2—H2A···Br20.972.913.406 (3)113
C2—H2B···O120.972.322.997 (4)126
C6—H6A···Br10.972.883.797 (3)159
C7—H7B···O120.972.653.030 (4)103
C15—H15···O120.932.322.697 (4)104
C18—H18···Br10.932.963.758 (4)145
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O12—H12⋯Br1i 0.81 (4)2.38 (4)3.179 (2)173 (3)
C2—H2B⋯O120.972.322.997 (4)126
C6—H6A⋯Br10.972.883.797 (3)159
C18—H18⋯Br10.932.963.758 (4)145

Symmetry code: (i) .

  4 in total

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Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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Journal:  Angew Chem Int Ed Engl       Date:  2009       Impact factor: 15.336

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Journal:  Angew Chem Int Ed Engl       Date:  2010-08-02       Impact factor: 15.336

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Authors:  Sang-Sup Jew; Mi-Sook Yoo; Byeong-Seon Jeong; Il Yeong Park; Hyeung-Geun Park
Journal:  Org Lett       Date:  2002-11-28       Impact factor: 6.005

  4 in total
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1.  Crystal structures of anhydrous and hydrated N-benzyl-cinchonidinium bromide.

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Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2022-05-17
  1 in total

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