Literature DB >> 22969674

4-Meth-oxy-2-{(E)-[(thio-phen-2-yl)methyl-imino]-meth-yl}phenol.

Esen Nur Kantar, Yavuz Köysal, Mustafa Macit, Ebru Er, Mustafa Serkan Soylu.   

Abstract

The title Schiff base, C(13)H(13)NO(2)S, adopts the phenol-imine tautomeric form and reveals an intra-molecular O-H⋯N hydrogen bond involving the hy-droxy group and the imino N atom, forming an S(6) ring. The mol-ecule is highly twisted with respect to the central imine group, which is reflected in the dihedral angle of 67.83 (10)° formed by the thienyl and phenol rings. The crystal packing is characterized by weak C-H⋯O and C-H⋯π inter-actions.

Entities:  

Year:  2012        PMID: 22969674      PMCID: PMC3435828          DOI: 10.1107/S1600536812036586

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

Schiff bases of salicyl­aldehyde may exhibit thermochromism or photochromism, depending on the planarity or non-planarity, respectively, of the mol­ecule, see: Amimoto & Kawato (2005 ▶); Schmidt & Cohen (1964 ▶). For a related structure, see: Kantar et al. (2012 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶)

Experimental

Crystal data

C13H13NO2S M = 247.30 Monoclinic, a = 5.6325 (3) Å b = 8.1666 (3) Å c = 13.4836 (6) Å β = 96.798 (4)° V = 615.86 (5) Å3 Z = 2 Mo Kα radiation μ = 0.25 mm−1 T = 293 K 0.20 × 0.15 × 0.10 mm

Data collection

Oxford Diffraction SuperNova (single source at offset) Eos diffractometer Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2007 ▶) T min = 0.951, T max = 0.975 2221 measured reflections 1809 independent reflections 1472 reflections with I > 2σ(I) R int = 0.015

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.109 S = 1.06 1809 reflections 159 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.16 e Å−3 Δρmin = −0.21 e Å−3 Absolute structure: Flack (1983 ▶), 640 Friedel pairs Flack parameter: 0.04 (13) Data collection: CrysAlis PRO (Oxford Diffraction, 2007 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812036586/zq2177sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812036586/zq2177Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812036586/zq2177Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H13NO2SF(000) = 260
Mr = 247.30Dx = 1.334 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 958 reflections
a = 5.6325 (3) Åθ = 3.6–28.7°
b = 8.1666 (3) ŵ = 0.25 mm1
c = 13.4836 (6) ÅT = 293 K
β = 96.798 (4)°Block, yellow
V = 615.86 (5) Å30.20 × 0.15 × 0.10 mm
Z = 2
Oxford Diffraction SuperNova (single source at offset) Eos diffractometer1809 independent reflections
Radiation source: fine-focus sealed tube1472 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.015
Detector resolution: 16.0454 pixels mm-1θmax = 25.0°, θmin = 3.6°
ω scansh = −3→6
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2007)k = −9→9
Tmin = 0.951, Tmax = 0.975l = −15→16
2221 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.047H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.109w = 1/[σ2(Fo2) + (0.0439P)2] where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max = 0.009
1809 reflectionsΔρmax = 0.16 e Å3
159 parametersΔρmin = −0.21 e Å3
2 restraintsAbsolute structure: Flack (1983), 640 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.04 (13)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.3932 (6)0.8415 (4)0.5974 (3)0.0481 (9)
C20.4982 (7)0.9033 (4)0.5174 (3)0.0551 (10)
H20.64170.96040.52890.066*
C30.3927 (7)0.8808 (4)0.4220 (3)0.0562 (10)
H30.46630.92210.36910.067*
C40.1768 (7)0.7970 (4)0.4023 (3)0.0500 (9)
C50.0698 (7)0.7362 (4)0.4812 (2)0.0449 (9)
H5−0.07380.67950.46890.054*
C60.1748 (6)0.7589 (4)0.5800 (2)0.0415 (8)
C70.0515 (7)0.6993 (4)0.6618 (3)0.0440 (9)
H7−0.09210.64330.64720.053*
C8−0.0063 (7)0.6629 (5)0.8305 (3)0.0586 (11)
H8A−0.10250.57020.80500.070*
H8B−0.11390.74890.84680.070*
C90.1489 (7)0.6132 (4)0.9223 (3)0.0506 (9)
C100.1217 (7)0.6557 (5)1.0203 (3)0.0562 (10)
H100.00140.72321.03890.067*
C110.3051 (8)0.5809 (6)1.0888 (3)0.0726 (13)
H110.31780.59601.15760.087*
C120.4554 (8)0.4878 (7)1.0440 (3)0.0725 (12)
H120.58210.43021.07810.087*
C13−0.1056 (9)0.6748 (6)0.2794 (3)0.0737 (13)
H13A−0.15140.67560.20850.111*
H13B−0.23830.70910.31280.111*
H13C−0.05870.56610.30040.111*
N10.1345 (6)0.7215 (4)0.7533 (2)0.0528 (8)
O10.5060 (5)0.8643 (3)0.6917 (2)0.0659 (8)
O20.0879 (6)0.7829 (3)0.30331 (18)0.0652 (8)
S10.3895 (2)0.48631 (16)0.91768 (8)0.0757 (4)
H10.386 (11)0.814 (9)0.743 (4)0.17 (2)*
U11U22U33U12U13U23
C10.040 (2)0.046 (2)0.058 (2)0.0053 (19)0.0061 (18)−0.0043 (18)
C20.041 (2)0.056 (2)0.069 (3)−0.006 (2)0.009 (2)0.0000 (19)
C30.060 (3)0.049 (2)0.063 (3)0.001 (2)0.022 (2)0.0059 (19)
C40.061 (3)0.044 (2)0.045 (2)0.004 (2)0.0071 (19)−0.0015 (16)
C50.050 (2)0.0383 (18)0.047 (2)−0.0017 (18)0.0080 (17)0.0000 (16)
C60.0394 (19)0.0395 (18)0.045 (2)0.0054 (18)0.0042 (16)−0.0009 (15)
C70.042 (2)0.0389 (19)0.051 (2)0.0017 (18)0.0079 (18)0.0005 (16)
C80.052 (2)0.078 (3)0.047 (2)0.002 (2)0.0097 (19)0.003 (2)
C90.054 (2)0.049 (2)0.050 (2)0.001 (2)0.0098 (19)0.0036 (16)
C100.060 (2)0.064 (2)0.045 (2)0.004 (2)0.0089 (19)0.0020 (18)
C110.078 (3)0.091 (3)0.050 (3)−0.005 (3)0.011 (2)0.003 (2)
C120.069 (3)0.080 (3)0.066 (3)−0.001 (3)−0.001 (2)0.017 (3)
C130.087 (3)0.086 (3)0.045 (2)−0.006 (3)0.000 (2)−0.008 (2)
N10.0490 (19)0.063 (2)0.0468 (18)0.0014 (17)0.0085 (15)0.0032 (15)
O10.0475 (16)0.085 (2)0.0622 (19)−0.0050 (16)−0.0050 (14)−0.0040 (15)
O20.085 (2)0.0653 (17)0.0457 (16)−0.0113 (17)0.0085 (15)0.0064 (13)
S10.0763 (8)0.0815 (8)0.0709 (7)0.0178 (7)0.0153 (6)−0.0011 (6)
C1—O11.365 (4)C8—H8A0.9700
C1—C21.385 (5)C8—H8B0.9700
C1—C61.398 (5)C9—C101.392 (5)
C2—C31.364 (5)C9—S11.713 (4)
C2—H20.9300C10—C111.438 (5)
C3—C41.393 (5)C10—H100.9300
C3—H30.9300C11—C121.334 (6)
C4—O21.374 (4)C11—H110.9300
C4—C51.375 (5)C12—S11.699 (4)
C5—C61.404 (4)C12—H120.9300
C5—H50.9300C13—O21.410 (5)
C6—C71.456 (4)C13—H13A0.9600
C7—N11.279 (4)C13—H13B0.9600
C7—H70.9300C13—H13C0.9600
C8—N11.462 (4)O1—H11.10 (6)
C8—C91.486 (5)
O1—C1—C2118.7 (3)C9—C8—H8B109.3
O1—C1—C6121.7 (3)H8A—C8—H8B108.0
C2—C1—C6119.6 (3)C10—C9—C8127.1 (4)
C3—C2—C1120.4 (4)C10—C9—S1111.2 (3)
C3—C2—H2119.8C8—C9—S1121.7 (3)
C1—C2—H2119.8C9—C10—C11110.6 (4)
C2—C3—C4121.2 (4)C9—C10—H10124.7
C2—C3—H3119.4C11—C10—H10124.7
C4—C3—H3119.4C12—C11—C10113.4 (4)
O2—C4—C5125.3 (4)C12—C11—H11123.3
O2—C4—C3115.8 (3)C10—C11—H11123.3
C5—C4—C3118.8 (3)C11—C12—S1112.5 (3)
C4—C5—C6120.8 (3)C11—C12—H12123.7
C4—C5—H5119.6S1—C12—H12123.7
C6—C5—H5119.6O2—C13—H13A109.5
C5—C6—C1119.1 (3)O2—C13—H13B109.5
C5—C6—C7119.4 (3)H13A—C13—H13B109.5
C1—C6—C7121.5 (3)O2—C13—H13C109.5
N1—C7—C6122.1 (3)H13A—C13—H13C109.5
N1—C7—H7119.0H13B—C13—H13C109.5
C6—C7—H7119.0C7—N1—C8118.2 (3)
N1—C8—C9111.6 (3)C1—O1—H1106 (3)
N1—C8—H8A109.3C4—O2—C13117.3 (3)
C9—C8—H8A109.3C12—S1—C992.2 (2)
N1—C8—H8B109.3
O1—C1—C2—C3179.0 (3)C1—C6—C7—N11.1 (5)
C6—C1—C2—C3−1.5 (5)N1—C8—C9—C10132.6 (4)
C1—C2—C3—C40.6 (5)N1—C8—C9—S1−49.0 (5)
C2—C3—C4—O2179.7 (3)C8—C9—C10—C11178.8 (3)
C2—C3—C4—C5−0.1 (5)S1—C9—C10—C110.3 (4)
O2—C4—C5—C6−179.3 (3)C9—C10—C11—C12−0.8 (6)
C3—C4—C5—C60.4 (5)C10—C11—C12—S10.9 (5)
C4—C5—C6—C1−1.3 (5)C6—C7—N1—C8177.7 (3)
C4—C5—C6—C7177.3 (3)C9—C8—N1—C7149.1 (3)
O1—C1—C6—C5−178.7 (3)C5—C4—O2—C13−11.4 (5)
C2—C1—C6—C51.8 (5)C3—C4—O2—C13168.9 (3)
O1—C1—C6—C72.7 (5)C11—C12—S1—C9−0.6 (4)
C2—C1—C6—C7−176.8 (3)C10—C9—S1—C120.1 (3)
C5—C6—C7—N1−177.5 (3)C8—C9—S1—C12−178.5 (3)
D—H···AD—HH···AD···AD—H···A
O1—H1···N11.10 (6)1.63 (7)2.616 (4)147 (5)
C8—H8A···O2i0.972.773.592 (4)143
C2—H2···Cg1ii0.933.003.631 (4)127
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the C1–C6 ring.

D—H⋯A D—HH⋯A DA D—H⋯A
O1—H1⋯N11.10 (6)1.63 (7)2.616 (4)147 (5)
C8—H8A⋯O2i 0.972.773.592 (4)143
C2—H2⋯Cg1ii 0.933.003.631 (4)127

Symmetry codes: (i) ; (ii) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  5-Diethyl-amino-2-[(E)-(2,4-dimeth-oxy-phen-yl)imino-meth-yl]phenol.

Authors:  Esen Nur Kantar; Yavuz Köysal; Sümeyye Gümüş; Erbil Ağar; Mustafa Serkan Soylu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-05-02
  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.