| Literature DB >> 22969674 |
Esen Nur Kantar, Yavuz Köysal, Mustafa Macit, Ebru Er, Mustafa Serkan Soylu.
Abstract
The title Schiff base, C(13)H(13)NO(2)S, adopts the phenol-imine tautomeric form and reveals an intra-molecular O-H⋯N hydrogen bond involving the hy-droxy group and the imino N atom, forming an S(6) ring. The mol-ecule is highly twisted with respect to the central imine group, which is reflected in the dihedral angle of 67.83 (10)° formed by the thienyl and phenol rings. The crystal packing is characterized by weak C-H⋯O and C-H⋯π inter-actions.Entities:
Year: 2012 PMID: 22969674 PMCID: PMC3435828 DOI: 10.1107/S1600536812036586
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C13H13NO2S | |
| Monoclinic, | Mo |
| Hall symbol: P 2yb | Cell parameters from 958 reflections |
| θ = 3.6–28.7° | |
| µ = 0.25 mm−1 | |
| β = 96.798 (4)° | Block, yellow |
| 0.20 × 0.15 × 0.10 mm | |
| Oxford Diffraction SuperNova (single source at offset) Eos diffractometer | 1809 independent reflections |
| Radiation source: fine-focus sealed tube | 1472 reflections with |
| Graphite monochromator | |
| Detector resolution: 16.0454 pixels mm-1 | θmax = 25.0°, θmin = 3.6° |
| ω scans | |
| Absorption correction: multi-scan ( | |
| 2221 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max = 0.009 | |
| 1809 reflections | Δρmax = 0.16 e Å−3 |
| 159 parameters | Δρmin = −0.21 e Å−3 |
| 2 restraints | Absolute structure: Flack (1983), 640 Friedel pairs |
| Primary atom site location: structure-invariant direct methods | Flack parameter: 0.04 (13) |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| C1 | 0.3932 (6) | 0.8415 (4) | 0.5974 (3) | 0.0481 (9) | |
| C2 | 0.4982 (7) | 0.9033 (4) | 0.5174 (3) | 0.0551 (10) | |
| H2 | 0.6417 | 0.9604 | 0.5289 | 0.066* | |
| C3 | 0.3927 (7) | 0.8808 (4) | 0.4220 (3) | 0.0562 (10) | |
| H3 | 0.4663 | 0.9221 | 0.3691 | 0.067* | |
| C4 | 0.1768 (7) | 0.7970 (4) | 0.4023 (3) | 0.0500 (9) | |
| C5 | 0.0698 (7) | 0.7362 (4) | 0.4812 (2) | 0.0449 (9) | |
| H5 | −0.0738 | 0.6795 | 0.4689 | 0.054* | |
| C6 | 0.1748 (6) | 0.7589 (4) | 0.5800 (2) | 0.0415 (8) | |
| C7 | 0.0515 (7) | 0.6993 (4) | 0.6618 (3) | 0.0440 (9) | |
| H7 | −0.0921 | 0.6433 | 0.6472 | 0.053* | |
| C8 | −0.0063 (7) | 0.6629 (5) | 0.8305 (3) | 0.0586 (11) | |
| H8A | −0.1025 | 0.5702 | 0.8050 | 0.070* | |
| H8B | −0.1139 | 0.7489 | 0.8468 | 0.070* | |
| C9 | 0.1489 (7) | 0.6132 (4) | 0.9223 (3) | 0.0506 (9) | |
| C10 | 0.1217 (7) | 0.6557 (5) | 1.0203 (3) | 0.0562 (10) | |
| H10 | 0.0014 | 0.7232 | 1.0389 | 0.067* | |
| C11 | 0.3051 (8) | 0.5809 (6) | 1.0888 (3) | 0.0726 (13) | |
| H11 | 0.3178 | 0.5960 | 1.1576 | 0.087* | |
| C12 | 0.4554 (8) | 0.4878 (7) | 1.0440 (3) | 0.0725 (12) | |
| H12 | 0.5821 | 0.4302 | 1.0781 | 0.087* | |
| C13 | −0.1056 (9) | 0.6748 (6) | 0.2794 (3) | 0.0737 (13) | |
| H13A | −0.1514 | 0.6756 | 0.2085 | 0.111* | |
| H13B | −0.2383 | 0.7091 | 0.3128 | 0.111* | |
| H13C | −0.0587 | 0.5661 | 0.3004 | 0.111* | |
| N1 | 0.1345 (6) | 0.7215 (4) | 0.7533 (2) | 0.0528 (8) | |
| O1 | 0.5060 (5) | 0.8643 (3) | 0.6917 (2) | 0.0659 (8) | |
| O2 | 0.0879 (6) | 0.7829 (3) | 0.30331 (18) | 0.0652 (8) | |
| S1 | 0.3895 (2) | 0.48631 (16) | 0.91768 (8) | 0.0757 (4) | |
| H1 | 0.386 (11) | 0.814 (9) | 0.743 (4) | 0.17 (2)* |
| C1 | 0.040 (2) | 0.046 (2) | 0.058 (2) | 0.0053 (19) | 0.0061 (18) | −0.0043 (18) |
| C2 | 0.041 (2) | 0.056 (2) | 0.069 (3) | −0.006 (2) | 0.009 (2) | 0.0000 (19) |
| C3 | 0.060 (3) | 0.049 (2) | 0.063 (3) | 0.001 (2) | 0.022 (2) | 0.0059 (19) |
| C4 | 0.061 (3) | 0.044 (2) | 0.045 (2) | 0.004 (2) | 0.0071 (19) | −0.0015 (16) |
| C5 | 0.050 (2) | 0.0383 (18) | 0.047 (2) | −0.0017 (18) | 0.0080 (17) | 0.0000 (16) |
| C6 | 0.0394 (19) | 0.0395 (18) | 0.045 (2) | 0.0054 (18) | 0.0042 (16) | −0.0009 (15) |
| C7 | 0.042 (2) | 0.0389 (19) | 0.051 (2) | 0.0017 (18) | 0.0079 (18) | 0.0005 (16) |
| C8 | 0.052 (2) | 0.078 (3) | 0.047 (2) | 0.002 (2) | 0.0097 (19) | 0.003 (2) |
| C9 | 0.054 (2) | 0.049 (2) | 0.050 (2) | 0.001 (2) | 0.0098 (19) | 0.0036 (16) |
| C10 | 0.060 (2) | 0.064 (2) | 0.045 (2) | 0.004 (2) | 0.0089 (19) | 0.0020 (18) |
| C11 | 0.078 (3) | 0.091 (3) | 0.050 (3) | −0.005 (3) | 0.011 (2) | 0.003 (2) |
| C12 | 0.069 (3) | 0.080 (3) | 0.066 (3) | −0.001 (3) | −0.001 (2) | 0.017 (3) |
| C13 | 0.087 (3) | 0.086 (3) | 0.045 (2) | −0.006 (3) | 0.000 (2) | −0.008 (2) |
| N1 | 0.0490 (19) | 0.063 (2) | 0.0468 (18) | 0.0014 (17) | 0.0085 (15) | 0.0032 (15) |
| O1 | 0.0475 (16) | 0.085 (2) | 0.0622 (19) | −0.0050 (16) | −0.0050 (14) | −0.0040 (15) |
| O2 | 0.085 (2) | 0.0653 (17) | 0.0457 (16) | −0.0113 (17) | 0.0085 (15) | 0.0064 (13) |
| S1 | 0.0763 (8) | 0.0815 (8) | 0.0709 (7) | 0.0178 (7) | 0.0153 (6) | −0.0011 (6) |
| C1—O1 | 1.365 (4) | C8—H8A | 0.9700 |
| C1—C2 | 1.385 (5) | C8—H8B | 0.9700 |
| C1—C6 | 1.398 (5) | C9—C10 | 1.392 (5) |
| C2—C3 | 1.364 (5) | C9—S1 | 1.713 (4) |
| C2—H2 | 0.9300 | C10—C11 | 1.438 (5) |
| C3—C4 | 1.393 (5) | C10—H10 | 0.9300 |
| C3—H3 | 0.9300 | C11—C12 | 1.334 (6) |
| C4—O2 | 1.374 (4) | C11—H11 | 0.9300 |
| C4—C5 | 1.375 (5) | C12—S1 | 1.699 (4) |
| C5—C6 | 1.404 (4) | C12—H12 | 0.9300 |
| C5—H5 | 0.9300 | C13—O2 | 1.410 (5) |
| C6—C7 | 1.456 (4) | C13—H13A | 0.9600 |
| C7—N1 | 1.279 (4) | C13—H13B | 0.9600 |
| C7—H7 | 0.9300 | C13—H13C | 0.9600 |
| C8—N1 | 1.462 (4) | O1—H1 | 1.10 (6) |
| C8—C9 | 1.486 (5) | ||
| O1—C1—C2 | 118.7 (3) | C9—C8—H8B | 109.3 |
| O1—C1—C6 | 121.7 (3) | H8A—C8—H8B | 108.0 |
| C2—C1—C6 | 119.6 (3) | C10—C9—C8 | 127.1 (4) |
| C3—C2—C1 | 120.4 (4) | C10—C9—S1 | 111.2 (3) |
| C3—C2—H2 | 119.8 | C8—C9—S1 | 121.7 (3) |
| C1—C2—H2 | 119.8 | C9—C10—C11 | 110.6 (4) |
| C2—C3—C4 | 121.2 (4) | C9—C10—H10 | 124.7 |
| C2—C3—H3 | 119.4 | C11—C10—H10 | 124.7 |
| C4—C3—H3 | 119.4 | C12—C11—C10 | 113.4 (4) |
| O2—C4—C5 | 125.3 (4) | C12—C11—H11 | 123.3 |
| O2—C4—C3 | 115.8 (3) | C10—C11—H11 | 123.3 |
| C5—C4—C3 | 118.8 (3) | C11—C12—S1 | 112.5 (3) |
| C4—C5—C6 | 120.8 (3) | C11—C12—H12 | 123.7 |
| C4—C5—H5 | 119.6 | S1—C12—H12 | 123.7 |
| C6—C5—H5 | 119.6 | O2—C13—H13A | 109.5 |
| C5—C6—C1 | 119.1 (3) | O2—C13—H13B | 109.5 |
| C5—C6—C7 | 119.4 (3) | H13A—C13—H13B | 109.5 |
| C1—C6—C7 | 121.5 (3) | O2—C13—H13C | 109.5 |
| N1—C7—C6 | 122.1 (3) | H13A—C13—H13C | 109.5 |
| N1—C7—H7 | 119.0 | H13B—C13—H13C | 109.5 |
| C6—C7—H7 | 119.0 | C7—N1—C8 | 118.2 (3) |
| N1—C8—C9 | 111.6 (3) | C1—O1—H1 | 106 (3) |
| N1—C8—H8A | 109.3 | C4—O2—C13 | 117.3 (3) |
| C9—C8—H8A | 109.3 | C12—S1—C9 | 92.2 (2) |
| N1—C8—H8B | 109.3 | ||
| O1—C1—C2—C3 | 179.0 (3) | C1—C6—C7—N1 | 1.1 (5) |
| C6—C1—C2—C3 | −1.5 (5) | N1—C8—C9—C10 | 132.6 (4) |
| C1—C2—C3—C4 | 0.6 (5) | N1—C8—C9—S1 | −49.0 (5) |
| C2—C3—C4—O2 | 179.7 (3) | C8—C9—C10—C11 | 178.8 (3) |
| C2—C3—C4—C5 | −0.1 (5) | S1—C9—C10—C11 | 0.3 (4) |
| O2—C4—C5—C6 | −179.3 (3) | C9—C10—C11—C12 | −0.8 (6) |
| C3—C4—C5—C6 | 0.4 (5) | C10—C11—C12—S1 | 0.9 (5) |
| C4—C5—C6—C1 | −1.3 (5) | C6—C7—N1—C8 | 177.7 (3) |
| C4—C5—C6—C7 | 177.3 (3) | C9—C8—N1—C7 | 149.1 (3) |
| O1—C1—C6—C5 | −178.7 (3) | C5—C4—O2—C13 | −11.4 (5) |
| C2—C1—C6—C5 | 1.8 (5) | C3—C4—O2—C13 | 168.9 (3) |
| O1—C1—C6—C7 | 2.7 (5) | C11—C12—S1—C9 | −0.6 (4) |
| C2—C1—C6—C7 | −176.8 (3) | C10—C9—S1—C12 | 0.1 (3) |
| C5—C6—C7—N1 | −177.5 (3) | C8—C9—S1—C12 | −178.5 (3) |
| H··· | ||||
| O1—H1···N1 | 1.10 (6) | 1.63 (7) | 2.616 (4) | 147 (5) |
| C8—H8 | 0.97 | 2.77 | 3.592 (4) | 143 |
| C2—H2··· | 0.93 | 3.00 | 3.631 (4) | 127 |
Hydrogen-bond geometry (Å, °)
Cg1 is the centroid of the C1–C6 ring.
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O1—H1⋯N1 | 1.10 (6) | 1.63 (7) | 2.616 (4) | 147 (5) |
| C8—H8 | 0.97 | 2.77 | 3.592 (4) | 143 |
| C2—H2⋯ | 0.93 | 3.00 | 3.631 (4) | 127 |
Symmetry codes: (i) ; (ii) .