| Literature DB >> 22969634 |
Gang Yu1.
Abstract
In the crystal structure of the title compound, C(5)H(8)N(3) (+)·H(2)PO(4) (-), N-H⋯O hydrogen bonds, involving the unprotonated amino-group and the NH(+) group in the pyridinium ring and dihydrogenphosphate O atoms, link the cations and anions. A long chain-like stacking of dihydrogenphosphate anions along the c-axis direction is constructed by O-H⋯O hydrogen bonds. Also along the c-axis direction, π-π stacking between inversion-related pyridinium rings [centroid-centroid distance = 3.8051 (10) Å] forms columnar stacks of cations.Entities:
Year: 2012 PMID: 22969634 PMCID: PMC3435763 DOI: 10.1107/S1600536812035489
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C5H8N3+·H2O4P− | |
| Triclinic, | |
| Hall symbol: -P 1 | Melting point: 396 K |
| Mo | |
| Cell parameters from 1340 reflections | |
| θ = 2.7–27.5° | |
| α = 70.811 (10)° | µ = 0.29 mm−1 |
| β = 74.980 (14)° | |
| γ = 84.883 (15)° | Block, yellow |
| 0.50 × 0.30 × 0.20 mm |
| Rigaku Mercury CCD diffractometer | 2057 independent reflections |
| Radiation source: fine-focus sealed tube | 1938 reflections with > σ( |
| Graphite monochromator | |
| ω and φ scans | θmax = 27.5°, θmin = 2.7° |
| Absorption correction: multi-scan ( | |
| 5434 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2057 reflections | (Δ/σ)max < 0.001 |
| 133 parameters | Δρmax = 0.30 e Å−3 |
| 4 restraints | Δρmin = −0.33 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| N1 | 1.09610 (18) | −0.12682 (15) | 0.27998 (16) | 0.0371 (3) | |
| H1 | 1.1789 | −0.2047 | 0.3065 | 0.044* | |
| N2 | 1.2828 (3) | 0.0630 (2) | 0.3140 (3) | 0.0656 (5) | |
| H1N2 | 1.294 (3) | 0.166 (3) | 0.304 (3) | 0.079* | |
| H2N2 | 1.350 (3) | −0.023 (3) | 0.354 (3) | 0.079* | |
| N3 | 0.9398 (2) | −0.34142 (19) | 0.2483 (2) | 0.0494 (4) | |
| H1N3 | 1.044 (3) | −0.400 (3) | 0.241 (3) | 0.059* | |
| H2N3 | 0.852 (3) | −0.368 (3) | 0.213 (3) | 0.059* | |
| C1 | 1.1233 (2) | 0.0373 (2) | 0.2779 (2) | 0.0457 (4) | |
| C2 | 0.9892 (3) | 0.1617 (2) | 0.2384 (3) | 0.0615 (5) | |
| H3C | 1.0028 | 0.2753 | 0.2361 | 0.074* | |
| C3 | 0.8346 (3) | 0.1145 (2) | 0.2023 (3) | 0.0626 (5) | |
| H4A | 0.7440 | 0.1984 | 0.1763 | 0.075* | |
| C4 | 0.8092 (2) | −0.0517 (2) | 0.2035 (2) | 0.0502 (4) | |
| H5A | 0.7037 | −0.0804 | 0.1788 | 0.060* | |
| C5 | 0.9458 (2) | −0.17538 (19) | 0.2426 (2) | 0.0376 (3) | |
| P1 | 0.44212 (5) | −0.47555 (5) | 0.25676 (5) | 0.03232 (13) | |
| O1 | 0.46973 (19) | −0.65793 (14) | 0.39139 (15) | 0.0485 (3) | |
| H1A | 0.5193 | −0.6456 | 0.4650 | 0.073* | |
| O2 | 0.39135 (16) | −0.34140 (14) | 0.35200 (15) | 0.0439 (3) | |
| O3 | 0.63300 (16) | −0.4229 (2) | 0.12119 (16) | 0.0564 (4) | |
| H3 | 0.6390 | −0.4552 | 0.0348 | 0.085* | |
| O4 | 0.30132 (14) | −0.50108 (16) | 0.16548 (15) | 0.0451 (3) |
| N1 | 0.0417 (7) | 0.0296 (6) | 0.0424 (6) | −0.0011 (5) | −0.0130 (5) | −0.0124 (5) |
| N2 | 0.0784 (12) | 0.0459 (9) | 0.0813 (12) | −0.0211 (8) | −0.0222 (10) | −0.0242 (9) |
| N3 | 0.0382 (7) | 0.0458 (8) | 0.0771 (10) | 0.0003 (6) | −0.0228 (7) | −0.0301 (7) |
| C1 | 0.0575 (10) | 0.0331 (7) | 0.0434 (8) | −0.0106 (6) | −0.0015 (7) | −0.0140 (6) |
| C2 | 0.0734 (13) | 0.0313 (8) | 0.0683 (12) | 0.0015 (8) | 0.0017 (10) | −0.0158 (8) |
| C3 | 0.0571 (11) | 0.0464 (9) | 0.0668 (12) | 0.0172 (8) | −0.0012 (9) | −0.0102 (8) |
| C4 | 0.0384 (8) | 0.0548 (10) | 0.0524 (9) | 0.0092 (7) | −0.0097 (7) | −0.0140 (8) |
| C5 | 0.0348 (7) | 0.0401 (7) | 0.0380 (7) | −0.0006 (6) | −0.0072 (6) | −0.0138 (6) |
| P1 | 0.0338 (2) | 0.0371 (2) | 0.0335 (2) | −0.00135 (14) | −0.01388 (14) | −0.01632 (15) |
| O1 | 0.0767 (8) | 0.0343 (5) | 0.0468 (6) | 0.0030 (5) | −0.0286 (6) | −0.0196 (5) |
| O2 | 0.0588 (7) | 0.0381 (5) | 0.0482 (6) | 0.0114 (5) | −0.0289 (5) | −0.0223 (5) |
| O3 | 0.0419 (6) | 0.0955 (10) | 0.0429 (6) | −0.0273 (6) | −0.0061 (5) | −0.0329 (7) |
| O4 | 0.0328 (5) | 0.0688 (7) | 0.0477 (6) | −0.0014 (5) | −0.0154 (5) | −0.0322 (6) |
| N1—C1 | 1.3586 (18) | C2—H3C | 0.9300 |
| N1—C5 | 1.3601 (19) | C3—C4 | 1.375 (3) |
| N1—H1 | 0.8600 | C3—H4A | 0.9300 |
| N2—C1 | 1.350 (3) | C4—C5 | 1.389 (2) |
| N2—H1N2 | 0.822 (18) | C4—H5A | 0.9300 |
| N2—H2N2 | 0.848 (19) | P1—O4 | 1.5028 (10) |
| N3—C5 | 1.336 (2) | P1—O2 | 1.5050 (10) |
| N3—H1N3 | 0.874 (17) | P1—O3 | 1.5584 (12) |
| N3—H2N3 | 0.852 (17) | P1—O1 | 1.5608 (12) |
| C1—C2 | 1.379 (3) | O1—H1A | 0.8200 |
| C2—C3 | 1.378 (3) | O3—H3 | 0.8200 |
| C1—N1—C5 | 123.93 (14) | C4—C3—H4A | 118.7 |
| C1—N1—H1 | 118.0 | C2—C3—H4A | 118.7 |
| C5—N1—H1 | 118.0 | C3—C4—C5 | 118.03 (17) |
| C1—N2—H1N2 | 110.8 (18) | C3—C4—H5A | 121.0 |
| C1—N2—H2N2 | 120.4 (18) | C5—C4—H5A | 121.0 |
| H1N2—N2—H2N2 | 128 (3) | N3—C5—N1 | 116.91 (13) |
| C5—N3—H1N3 | 117.6 (14) | N3—C5—C4 | 124.57 (15) |
| C5—N3—H2N3 | 116.4 (15) | N1—C5—C4 | 118.52 (14) |
| H1N3—N3—H2N3 | 120 (2) | O4—P1—O2 | 115.15 (6) |
| N2—C1—N1 | 115.83 (16) | O4—P1—O3 | 110.88 (6) |
| N2—C1—C2 | 126.02 (16) | O2—P1—O3 | 107.55 (7) |
| N1—C1—C2 | 118.14 (17) | O4—P1—O1 | 106.11 (7) |
| C3—C2—C1 | 118.83 (16) | O2—P1—O1 | 110.22 (6) |
| C3—C2—H3C | 120.6 | O3—P1—O1 | 106.64 (8) |
| C1—C2—H3C | 120.6 | P1—O1—H1A | 109.5 |
| C4—C3—C2 | 122.54 (17) | P1—O3—H3 | 109.5 |
| C5—N1—C1—N2 | −178.37 (15) | C2—C3—C4—C5 | 0.0 (3) |
| C5—N1—C1—C2 | 1.1 (2) | C1—N1—C5—N3 | 179.29 (15) |
| N2—C1—C2—C3 | 179.19 (19) | C1—N1—C5—C4 | −1.4 (2) |
| N1—C1—C2—C3 | −0.2 (3) | C3—C4—C5—N3 | −179.93 (17) |
| C1—C2—C3—C4 | −0.3 (3) | C3—C4—C5—N1 | 0.8 (2) |
| H··· | ||||
| N1—H1···O2i | 0.86 | 1.90 | 2.7515 (17) | 170 |
| N2—H2 | 0.85 (2) | 2.58 (2) | 3.241 (2) | 136 (2) |
| N3—H1 | 0.87 (2) | 2.05 (2) | 2.9078 (19) | 167 (2) |
| N2—H1 | 0.82 (2) | 2.40 (2) | 3.0734 (19) | 139 (2) |
| N2—H1 | 0.82 (2) | 2.56 (2) | 3.342 (2) | 159 (2) |
| O1—H1 | 0.82 | 1.76 | 2.5705 (15) | 169 |
| O3—H3···O4iv | 0.82 | 1.73 | 2.5334 (15) | 167 |
| N3—H2 | 0.85 (2) | 2.11 (2) | 2.9574 (18) | 178 (2) |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N1—H1⋯O2i | 0.86 | 1.90 | 2.7515 (17) | 170 |
| N2—H2 | 0.85 (2) | 2.58 (2) | 3.241 (2) | 136 (2) |
| N3—H1 | 0.87 (2) | 2.05 (2) | 2.9078 (19) | 167 (2) |
| N2—H1 | 0.82 (2) | 2.40 (2) | 3.0734 (19) | 139 (2) |
| N2—H1 | 0.82 (2) | 2.56 (2) | 3.342 (2) | 159 (2) |
| O1—H1 | 0.82 | 1.76 | 2.5705 (15) | 169 |
| O3—H3⋯O4iv | 0.82 | 1.73 | 2.5334 (15) | 167 |
| N3—H2 | 0.85 (2) | 2.11 (2) | 2.9574 (18) | 178 (2) |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .