Literature DB >> 22969632

2-Amino-5-(4-carboxyl-atophen-yl)-pyridinium monohydrate.

Xiao-Hong Wei1, Hong Yan, Wei-Gong Lin.   

Abstract

The title compound, C(12)H(10)N(2)O(2)·H(2)O, crystallizes as a zwitterion in which the pyridine N atom is protonated and the carb-oxy -OH group is deprotonated. The benzene and pyridinium rings are inclined with a dihedral angle of 6.63 (5)° between them. In the crystal, inter-molecular O-H⋯O and N-H⋯O hydrogen-bonding inter-actions link adjacent mol-ecules into a two-dimensional double layered supra-molecular network.

Entities:  

Year:  2012        PMID: 22969632      PMCID: PMC3435761          DOI: 10.1107/S1600536812035854

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the use of pyridine­n class="Chemical">carboxyl­ate acid in coordination chemistry and for related structures, see: Jia et al. (2007 ▶); Zhang et al. (2011 ▶).

Experimental

Crystal data

C12H10N2O2·n class="Chemical">H2O M = 232.24 Monoclinic, a = 7.796 (2) Å b = 7.808 (2) Å c = 18.480 (5) Å β = 95.165 (14)° V = 1120.4 (6) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 296 K 0.23 × 0.16 × 0.15 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.977, T max = 0.985 11449 measured reflections 2554 independent reflections 1505 reflections with I > 2σ(I) R int = 0.090

Refinement

R[F 2 > 2σ(F 2)] = 0.080 wR(F 2) = 0.208 S = 1.01 2554 reflections 160 parameters 3 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.17 e Å−3 Δρmin = −0.16 e Å−3 Data collection: SMART (Bruker, 1999 ▶); cell refinement: SAINT (Bruker, 1999 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812035854/jj2150sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812035854/jj2150Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812035854/jj2150Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H10N2O2·H2OF(000) = 488
Mr = 232.24Dx = 1.377 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ynCell parameters from 1672 reflections
a = 7.796 (2) Åθ = 2.8–27.5°
b = 7.808 (2) ŵ = 0.10 mm1
c = 18.480 (5) ÅT = 296 K
β = 95.165 (14)°Prism, colorless
V = 1120.4 (6) Å30.23 × 0.16 × 0.15 mm
Z = 4
Bruker SMART CCD diffractometer2554 independent reflections
Radiation source: fine-focus sealed tube1505 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.090
phi and ω scansθmax = 27.5°, θmin = 2.8°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −10→10
Tmin = 0.977, Tmax = 0.985k = −10→10
11449 measured reflectionsl = −23→24
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.080Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.208H atoms treated by a mixture of independent and constrained refinement
S = 1.01w = 1/[σ2(Fo2) + (0.0766P)2 + 0.595P] where P = (Fo2 + 2Fc2)/3
2554 reflections(Δ/σ)max < 0.001
160 parametersΔρmax = 0.17 e Å3
3 restraintsΔρmin = −0.16 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.5962 (4)0.7159 (4)0.15326 (17)0.0568 (8)
C20.6222 (4)0.7885 (4)0.08526 (18)0.0669 (9)
H2C0.60030.90420.07670.080*
C30.6796 (4)0.6884 (4)0.03225 (17)0.0647 (9)
H3A0.69270.7373−0.01280.078*
C40.7203 (4)0.5123 (4)0.04277 (15)0.0522 (7)
C50.6949 (4)0.4505 (4)0.11010 (16)0.0600 (8)
H5A0.72000.33620.12050.072*
C60.7823 (4)0.4004 (4)−0.01377 (15)0.0528 (7)
C70.8241 (4)0.4649 (4)−0.08022 (16)0.0642 (9)
H7B0.81210.5815−0.08950.077*
C80.8830 (4)0.3594 (4)−0.13264 (16)0.0648 (9)
H8C0.91190.4067−0.17610.078*
C90.8999 (4)0.1853 (4)−0.12169 (15)0.0555 (7)
C100.8584 (5)0.1196 (4)−0.05641 (17)0.0728 (10)
H10A0.86830.0025−0.04780.087*
C110.8022 (5)0.2251 (4)−0.00347 (18)0.0770 (11)
H11A0.77700.17740.04040.092*
C120.9664 (4)0.0670 (4)−0.17777 (17)0.0634 (8)
N10.6345 (3)0.5496 (3)0.16235 (13)0.0606 (7)
H1A0.62000.50330.20360.073*
N20.5351 (3)0.8023 (4)0.20782 (15)0.0693 (8)
H2A0.52100.75110.24810.083*
H2B0.51000.90910.20270.083*
O11.0359 (3)0.1364 (3)−0.22902 (12)0.0757 (7)
O20.9515 (4)−0.0921 (3)−0.17007 (13)0.0853 (8)
O30.4085 (4)1.1412 (3)0.16247 (15)0.0866 (8)
H3C0.300 (3)1.128 (6)0.165 (2)0.130*
H3D0.447 (5)1.207 (5)0.1977 (19)0.130*
U11U22U33U12U13U23
C10.0564 (17)0.0549 (18)0.0606 (19)−0.0067 (14)0.0137 (14)−0.0057 (14)
C20.085 (2)0.0504 (17)0.068 (2)−0.0074 (16)0.0206 (17)0.0030 (16)
C30.082 (2)0.0570 (18)0.0581 (19)−0.0106 (16)0.0216 (16)0.0042 (15)
C40.0583 (17)0.0535 (17)0.0454 (16)−0.0112 (14)0.0088 (13)0.0015 (12)
C50.075 (2)0.0542 (17)0.0516 (17)0.0010 (16)0.0116 (15)0.0009 (14)
C60.0579 (17)0.0570 (17)0.0441 (16)−0.0110 (14)0.0079 (13)−0.0008 (13)
C70.091 (2)0.0542 (17)0.0480 (17)−0.0022 (17)0.0119 (16)0.0042 (14)
C80.091 (2)0.065 (2)0.0397 (16)−0.0048 (18)0.0144 (15)0.0046 (14)
C90.0617 (17)0.0595 (18)0.0452 (16)−0.0059 (14)0.0042 (13)−0.0028 (13)
C100.109 (3)0.058 (2)0.0543 (19)0.0010 (19)0.0242 (18)0.0045 (15)
C110.124 (3)0.058 (2)0.0527 (18)−0.003 (2)0.0330 (19)0.0092 (15)
C120.072 (2)0.069 (2)0.0497 (18)−0.0034 (17)0.0087 (15)−0.0035 (16)
N10.0786 (17)0.0604 (16)0.0444 (14)−0.0014 (13)0.0153 (12)0.0001 (12)
N20.0809 (18)0.0634 (16)0.0668 (17)−0.0017 (14)0.0254 (15)−0.0080 (13)
O10.1006 (18)0.0747 (15)0.0557 (13)−0.0044 (13)0.0287 (13)−0.0042 (11)
O20.130 (2)0.0615 (15)0.0686 (16)−0.0009 (15)0.0326 (15)−0.0012 (12)
O30.117 (2)0.0677 (16)0.0786 (18)−0.0107 (16)0.0272 (16)−0.0095 (13)
C1—N21.336 (4)C8—C91.379 (4)
C1—N11.339 (4)C8—H8C0.9300
C1—C21.410 (4)C9—C101.376 (4)
C2—C31.360 (4)C9—C121.514 (4)
C2—H2C0.9300C10—C111.380 (4)
C3—C41.421 (4)C10—H10A0.9300
C3—H3A0.9300C11—H11A0.9300
C4—C51.365 (4)C12—O11.256 (4)
C4—C61.477 (4)C12—O21.257 (4)
C5—N11.355 (4)N1—H1A0.8600
C5—H5A0.9300N2—H2A0.8600
C6—C111.389 (4)N2—H2B0.8600
C6—C71.393 (4)O3—H3C0.860 (18)
C7—C81.381 (4)O3—H3D0.861 (18)
C7—H7B0.9300
N2—C1—N1119.0 (3)C9—C8—H8C119.4
N2—C1—C2124.0 (3)C7—C8—H8C119.4
N1—C1—C2117.0 (3)C10—C9—C8118.0 (3)
C3—C2—C1119.6 (3)C10—C9—C12119.6 (3)
C3—C2—H2C120.2C8—C9—C12122.3 (3)
C1—C2—H2C120.2C9—C10—C11120.9 (3)
C2—C3—C4122.8 (3)C9—C10—H10A119.6
C2—C3—H3A118.6C11—C10—H10A119.6
C4—C3—H3A118.6C10—C11—C6122.0 (3)
C5—C4—C3114.7 (3)C10—C11—H11A119.0
C5—C4—C6121.3 (3)C6—C11—H11A119.0
C3—C4—C6124.0 (3)O1—C12—O2124.3 (3)
N1—C5—C4122.4 (3)O1—C12—C9116.8 (3)
N1—C5—H5A118.8O2—C12—C9119.0 (3)
C4—C5—H5A118.8C1—N1—C5123.5 (3)
C11—C6—C7116.4 (3)C1—N1—H1A118.2
C11—C6—C4121.7 (3)C5—N1—H1A118.2
C7—C6—C4121.8 (3)C1—N2—H2A120.0
C8—C7—C6121.4 (3)C1—N2—H2B120.0
C8—C7—H7B119.3H2A—N2—H2B120.0
C6—C7—H7B119.3H3C—O3—H3D108 (3)
C9—C8—C7121.2 (3)
N2—C1—C2—C3−177.8 (3)C7—C8—C9—C10−0.8 (5)
N1—C1—C2—C31.7 (5)C7—C8—C9—C12−179.2 (3)
C1—C2—C3—C4−2.0 (5)C8—C9—C10—C11−0.3 (5)
C2—C3—C4—C50.9 (5)C12—C9—C10—C11178.1 (3)
C2—C3—C4—C6179.8 (3)C9—C10—C11—C61.1 (6)
C3—C4—C5—N10.4 (4)C7—C6—C11—C10−0.8 (5)
C6—C4—C5—N1−178.5 (3)C4—C6—C11—C10179.3 (3)
C5—C4—C6—C116.1 (5)C10—C9—C12—O1−165.4 (3)
C3—C4—C6—C11−172.8 (3)C8—C9—C12—O112.9 (5)
C5—C4—C6—C7−173.9 (3)C10—C9—C12—O213.6 (5)
C3—C4—C6—C77.3 (5)C8—C9—C12—O2−168.1 (3)
C11—C6—C7—C8−0.3 (5)N2—C1—N1—C5179.1 (3)
C4—C6—C7—C8179.6 (3)C2—C1—N1—C5−0.4 (5)
C6—C7—C8—C91.2 (5)C4—C5—N1—C1−0.7 (5)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O1i0.861.822.648 (3)160
N2—H2A···O2i0.862.072.911 (4)167
N2—H2B···O30.862.092.921 (4)163
O3—H3C···O2ii0.86 (2)1.99 (2)2.849 (4)178 (4)
O3—H3D···O1iii0.86 (2)1.91 (2)2.768 (4)176 (5)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1A⋯O1i 0.861.822.648 (3)160
N2—H2A⋯O2i 0.862.072.911 (4)167
N2—H2B⋯O30.862.092.921 (4)163
O3—H3C⋯O2ii 0.86 (2)1.99 (2)2.849 (4)178 (4)
O3—H3D⋯O1iii 0.86 (2)1.91 (2)2.768 (4)176 (5)

Symmetry codes: (i) ; (ii) ; (iii) .

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