Literature DB >> 22969627

2,2'-{[2-(Pyridin-2-yl)-1,3-diazinane-1,3-diyl]bis(methylene)}diphenol.

Adailton J Bortoluzzi1, Geovana G Terra.   

Abstract

The title compound, C(23)H(25)N(3)O(2), was obtained as an inter-mediary in the preparation of non-symmetric tertiary diamines. The mol-ecular structure presents T-shaped spatial form, in which the pyrimidine ring exhibits a chair conformation. The pyridyl ring is almost perpendicular to the phenyl rings with dihedral angles of 80.17 (8) and 76.03 (2)°. The phenol and amine groups are involved in two strong intra-molecular O-H⋯N inter-actions. In the crystal, the mol-ecules are stacked along [010]; however, no inter-molecular inter-actions are observed.

Entities:  

Year:  2012        PMID: 22969627      PMCID: PMC3435756          DOI: 10.1107/S1600536812035477

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthetic procedure, see: Hureau et al. (2008 ▶). For related structures, see: Yokoyama et al. (1995 ▶); Xia et al. (2007 ▶). For standard bond lengths and angles, see: Bruno et al. (2004 ▶).

Experimental

Crystal data

C23H25N3O2 M = 375.46 Monoclinic, a = 18.7615 (16) Å b = 6.2105 (11) Å c = 19.0407 (12) Å β = 114.594 (8)° V = 2017.3 (4) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 293 K 0.50 × 0.50 × 0.40 mm

Data collection

Enraf–Nonius CAD-4 diffractometer 3711 measured reflections 3595 independent reflections 2038 reflections with I > 2σ(I) R int = 0.079 3 standard reflections every 200 reflections intensity decay: 1%

Refinement

R[F 2 > 2σ(F 2)] = 0.052 wR(F 2) = 0.146 S = 1.01 3595 reflections 253 parameters H-atom parameters constrained Δρmax = 0.17 e Å−3 Δρmin = −0.22 e Å−3 Data collection: CAD-4 Software (Enraf–Nonius, 1989 ▶); cell refinement: SET4 in CAD-4 Software; data reduction: HELENA (Spek, 1996 ▶); program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812035477/lr2078sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812035477/lr2078Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812035477/lr2078Isup3.mol Supplementary material file. DOI: 10.1107/S1600536812035477/lr2078Isup4.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C23H25N3O2F(000) = 800
Mr = 375.46Dx = 1.236 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 25 reflections
a = 18.7615 (16) Åθ = 5.5–17.4°
b = 6.2105 (11) ŵ = 0.08 mm1
c = 19.0407 (12) ÅT = 293 K
β = 114.594 (8)°Block, colorless
V = 2017.3 (4) Å30.50 × 0.50 × 0.40 mm
Z = 4
Enraf–Nonius CAD-4 diffractometerRint = 0.079
Radiation source: fine-focus sealed tubeθmax = 25.1°, θmin = 1.3°
Graphite monochromatorh = −20→22
ω–2θ scansk = −7→0
3711 measured reflectionsl = −22→0
3595 independent reflections3 standard reflections every 200 reflections
2038 reflections with I > 2σ(I) intensity decay: 1%
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.052Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.146H-atom parameters constrained
S = 1.01w = 1/[σ2(Fo2) + (0.0711P)2 + 0.2051P] where P = (Fo2 + 2Fc2)/3
3595 reflections(Δ/σ)max < 0.001
253 parametersΔρmax = 0.17 e Å3
0 restraintsΔρmin = −0.22 e Å3
xyzUiso*/Ueq
N10.65802 (10)0.2353 (3)−0.10455 (10)0.0445 (5)
C20.57867 (13)0.1394 (4)−0.14032 (13)0.0545 (7)
H2A0.5828−0.0130−0.14920.065*
H2B0.54880.2073−0.18980.065*
C30.53699 (14)0.1696 (5)−0.08857 (14)0.0636 (8)
H3A0.52850.3218−0.08350.076*
H3B0.48630.0989−0.11090.076*
C40.58552 (14)0.0754 (5)−0.01042 (14)0.0631 (8)
H4A0.55940.09820.02350.076*
H4B0.5914−0.0784−0.01510.076*
N50.66299 (10)0.1781 (3)0.02244 (11)0.0481 (5)
C100.69848 (14)0.2035 (4)−0.15583 (14)0.0528 (6)
H10A0.69640.0521−0.16910.063*
H10B0.75320.2433−0.12830.063*
C110.66255 (14)0.3345 (4)−0.22904 (13)0.0504 (6)
C120.63385 (15)0.5401 (4)−0.22823 (15)0.0581 (7)
C130.60453 (16)0.6654 (5)−0.29458 (16)0.0697 (8)
H130.58380.8009−0.29380.084*
C140.60633 (17)0.5889 (6)−0.36109 (17)0.0781 (9)
H140.58810.6747−0.40510.094*
C150.63473 (17)0.3875 (6)−0.36363 (16)0.0741 (9)
H150.63530.3361−0.40930.089*
C160.66272 (15)0.2605 (5)−0.29765 (15)0.0635 (7)
H160.68190.1235−0.29950.076*
C200.70860 (14)0.0956 (4)0.10175 (13)0.0536 (7)
H20A0.76140.15320.12140.064*
H20B0.7121−0.06000.10000.064*
C210.67202 (13)0.1560 (4)0.15583 (13)0.0479 (6)
C220.64091 (15)0.3595 (5)0.15448 (14)0.0564 (7)
C230.61059 (16)0.4140 (5)0.20724 (16)0.0689 (8)
H230.58920.55000.20570.083*
C240.61217 (17)0.2666 (6)0.26183 (16)0.0735 (8)
H240.59210.30380.29740.088*
C250.64312 (17)0.0652 (5)0.26416 (15)0.0703 (8)
H250.6443−0.03410.30120.084*
C260.67240 (14)0.0119 (4)0.21108 (13)0.0568 (7)
H260.6930−0.12500.21250.068*
C300.70474 (12)0.1435 (4)−0.02717 (12)0.0443 (6)
H300.7115−0.0114−0.03210.053*
C310.78452 (13)0.2502 (4)0.00853 (13)0.0451 (6)
N320.84615 (11)0.1185 (3)0.03432 (12)0.0549 (6)
C330.91701 (15)0.2096 (5)0.06679 (17)0.0691 (8)
H330.96050.11950.08610.083*
C340.92949 (17)0.4257 (6)0.07337 (17)0.0740 (9)
H340.98010.48100.09550.089*
C350.86581 (17)0.5606 (5)0.04665 (14)0.0638 (8)
H350.87230.70920.05050.077*
C360.79262 (15)0.4714 (4)0.01433 (14)0.0550 (7)
H360.74850.5592−0.00370.066*
O100.63242 (12)0.6251 (3)−0.16299 (11)0.0789 (6)
H100.64850.5027−0.12400.095*
O200.63844 (12)0.5107 (3)0.10137 (11)0.0754 (6)
H200.65310.42370.05970.090*
U11U22U33U12U13U23
N10.0433 (11)0.0465 (11)0.0424 (10)0.0008 (9)0.0167 (9)0.0002 (9)
C20.0463 (14)0.0617 (17)0.0479 (13)−0.0021 (13)0.0120 (11)0.0025 (13)
C30.0396 (13)0.093 (2)0.0531 (15)−0.0052 (14)0.0141 (12)0.0054 (15)
C40.0490 (15)0.084 (2)0.0529 (15)−0.0118 (14)0.0176 (12)0.0097 (15)
N50.0394 (11)0.0558 (13)0.0452 (11)−0.0027 (10)0.0136 (9)0.0079 (10)
C100.0543 (15)0.0494 (15)0.0565 (15)0.0046 (12)0.0249 (13)−0.0022 (12)
C110.0479 (14)0.0565 (16)0.0476 (14)−0.0053 (12)0.0206 (11)−0.0021 (13)
C120.0621 (17)0.0532 (16)0.0529 (16)−0.0021 (14)0.0178 (13)0.0038 (14)
C130.0732 (19)0.0683 (19)0.0600 (17)−0.0021 (16)0.0202 (15)0.0139 (16)
C140.069 (2)0.100 (3)0.0585 (19)−0.0141 (19)0.0190 (15)0.0212 (19)
C150.0710 (19)0.108 (3)0.0508 (17)−0.022 (2)0.0330 (15)−0.0036 (18)
C160.0602 (16)0.078 (2)0.0611 (17)−0.0102 (15)0.0337 (14)−0.0119 (16)
C200.0468 (14)0.0567 (16)0.0479 (14)0.0035 (12)0.0104 (11)0.0101 (13)
C210.0412 (13)0.0541 (15)0.0392 (13)−0.0039 (12)0.0076 (10)0.0041 (12)
C220.0530 (15)0.0593 (17)0.0517 (15)0.0035 (14)0.0167 (12)0.0081 (14)
C230.0653 (18)0.073 (2)0.0637 (17)0.0132 (16)0.0224 (15)0.0025 (16)
C240.074 (2)0.094 (2)0.0539 (17)0.0093 (19)0.0283 (15)0.0021 (18)
C250.0755 (19)0.085 (2)0.0472 (15)0.0029 (18)0.0225 (14)0.0134 (16)
C260.0556 (15)0.0609 (17)0.0450 (14)0.0030 (13)0.0121 (12)0.0065 (13)
C300.0408 (13)0.0365 (12)0.0505 (14)0.0009 (11)0.0140 (11)0.0029 (11)
C310.0461 (14)0.0459 (15)0.0437 (13)0.0016 (12)0.0191 (11)0.0029 (12)
N320.0421 (12)0.0536 (13)0.0643 (13)0.0055 (11)0.0176 (10)0.0002 (11)
C330.0424 (16)0.077 (2)0.078 (2)0.0063 (15)0.0156 (14)−0.0024 (17)
C340.0540 (17)0.093 (3)0.0694 (19)−0.0226 (18)0.0199 (15)−0.0098 (18)
C350.076 (2)0.0546 (17)0.0557 (16)−0.0227 (16)0.0219 (15)−0.0059 (14)
C360.0592 (17)0.0457 (16)0.0567 (15)0.0011 (13)0.0207 (13)0.0039 (13)
O100.1205 (17)0.0512 (12)0.0618 (12)0.0213 (12)0.0346 (12)0.0043 (10)
O200.0978 (15)0.0595 (12)0.0769 (13)0.0172 (11)0.0444 (11)0.0199 (11)
N1—C101.478 (3)C20—C211.504 (3)
N1—C301.480 (3)C20—H20A0.9700
N1—C21.480 (3)C20—H20B0.9700
C2—C31.503 (3)C21—C261.379 (3)
C2—H2A0.9700C21—C221.388 (4)
C2—H2B0.9700C22—O201.367 (3)
C3—C41.503 (3)C22—C231.387 (4)
C3—H3A0.9700C23—C241.376 (4)
C3—H3B0.9700C23—H230.9300
C4—N51.468 (3)C24—C251.372 (4)
C4—H4A0.9700C24—H240.9300
C4—H4B0.9700C25—C261.376 (4)
N5—C301.472 (3)C25—H250.9300
N5—C201.483 (3)C26—H260.9300
C10—C111.509 (3)C30—C311.515 (3)
C10—H10A0.9700C30—H300.9800
C10—H10B0.9700C31—N321.332 (3)
C11—C161.386 (3)C31—C361.382 (3)
C11—C121.388 (4)N32—C331.336 (3)
C12—O101.360 (3)C33—C341.359 (4)
C12—C131.388 (4)C33—H330.9300
C13—C141.366 (4)C34—C351.372 (4)
C13—H130.9300C34—H340.9300
C14—C151.368 (4)C35—C361.367 (3)
C14—H140.9300C35—H350.9300
C15—C161.388 (4)C36—H360.9300
C15—H150.9300O10—H101.0163
C16—H160.9300O20—H201.0857
C10—N1—C30110.60 (17)N5—C20—C21112.13 (19)
C10—N1—C2109.68 (18)N5—C20—H20A109.2
C30—N1—C2111.63 (18)C21—C20—H20A109.2
N1—C2—C3110.3 (2)N5—C20—H20B109.2
N1—C2—H2A109.6C21—C20—H20B109.2
C3—C2—H2A109.6H20A—C20—H20B107.9
N1—C2—H2B109.6C26—C21—C22118.3 (2)
C3—C2—H2B109.6C26—C21—C20120.1 (2)
H2A—C2—H2B108.1C22—C21—C20121.5 (2)
C4—C3—C2109.6 (2)O20—C22—C23118.1 (3)
C4—C3—H3A109.8O20—C22—C21121.6 (2)
C2—C3—H3A109.8C23—C22—C21120.3 (3)
C4—C3—H3B109.8C24—C23—C22119.9 (3)
C2—C3—H3B109.8C24—C23—H23120.0
H3A—C3—H3B108.2C22—C23—H23120.0
N5—C4—C3109.7 (2)C25—C24—C23120.4 (3)
N5—C4—H4A109.7C25—C24—H24119.8
C3—C4—H4A109.7C23—C24—H24119.8
N5—C4—H4B109.7C24—C25—C26119.2 (3)
C3—C4—H4B109.7C24—C25—H25120.4
H4A—C4—H4B108.2C26—C25—H25120.4
C4—N5—C30111.11 (18)C25—C26—C21121.8 (3)
C4—N5—C20109.47 (18)C25—C26—H26119.1
C30—N5—C20111.56 (18)C21—C26—H26119.1
N1—C10—C11112.53 (19)N5—C30—N1109.26 (17)
N1—C10—H10A109.1N5—C30—C31109.79 (18)
C11—C10—H10A109.1N1—C30—C31110.09 (18)
N1—C10—H10B109.1N5—C30—H30109.2
C11—C10—H10B109.1N1—C30—H30109.2
H10A—C10—H10B107.8C31—C30—H30109.2
C16—C11—C12117.9 (2)N32—C31—C36122.1 (2)
C16—C11—C10121.1 (2)N32—C31—C30116.2 (2)
C12—C11—C10120.8 (2)C36—C31—C30121.7 (2)
O10—C12—C13117.6 (3)C31—N32—C33117.1 (2)
O10—C12—C11121.5 (2)N32—C33—C34124.1 (3)
C13—C12—C11120.9 (3)N32—C33—H33118.0
C14—C13—C12119.7 (3)C34—C33—H33118.0
C14—C13—H13120.1C33—C34—C35118.6 (3)
C12—C13—H13120.1C33—C34—H34120.7
C13—C14—C15120.7 (3)C35—C34—H34120.7
C13—C14—H14119.6C36—C35—C34118.4 (3)
C15—C14—H14119.6C36—C35—H35120.8
C14—C15—C16119.6 (3)C34—C35—H35120.8
C14—C15—H15120.2C35—C36—C31119.7 (3)
C16—C15—H15120.2C35—C36—H36120.1
C11—C16—C15121.1 (3)C31—C36—H36120.1
C11—C16—H16119.5C12—O10—H10105.3
C15—C16—H16119.5C22—O20—H20104.9
C10—N1—C2—C3179.7 (2)C20—C21—C22—C23−177.2 (2)
C30—N1—C2—C356.7 (3)O20—C22—C23—C24−179.8 (3)
N1—C2—C3—C4−56.0 (3)C21—C22—C23—C240.8 (4)
C2—C3—C4—N557.8 (3)C22—C23—C24—C25−0.4 (4)
C3—C4—N5—C30−60.3 (3)C23—C24—C25—C26−0.2 (4)
C3—C4—N5—C20176.1 (2)C24—C25—C26—C210.5 (4)
C30—N1—C10—C11−167.62 (19)C22—C21—C26—C25−0.1 (4)
C2—N1—C10—C1168.8 (2)C20—C21—C26—C25176.6 (2)
N1—C10—C11—C16−148.2 (2)C4—N5—C30—N159.5 (2)
N1—C10—C11—C1236.9 (3)C20—N5—C30—N1−178.04 (17)
C16—C11—C12—O10−179.3 (2)C4—N5—C30—C31−179.67 (19)
C10—C11—C12—O10−4.3 (4)C20—N5—C30—C31−57.2 (2)
C16—C11—C12—C131.5 (4)C10—N1—C30—N5179.92 (18)
C10—C11—C12—C13176.6 (2)C2—N1—C30—N5−57.7 (2)
O10—C12—C13—C14178.5 (2)C10—N1—C30—C3159.3 (2)
C11—C12—C13—C14−2.3 (4)C2—N1—C30—C31−178.30 (19)
C12—C13—C14—C151.8 (4)N5—C30—C31—N32111.9 (2)
C13—C14—C15—C16−0.6 (4)N1—C30—C31—N32−127.7 (2)
C12—C11—C16—C15−0.3 (4)N5—C30—C31—C36−67.7 (3)
C10—C11—C16—C15−175.4 (2)N1—C30—C31—C3652.7 (3)
C14—C15—C16—C11−0.1 (4)C36—C31—N32—C330.3 (4)
C4—N5—C20—C21−64.3 (3)C30—C31—N32—C33−179.3 (2)
C30—N5—C20—C21172.29 (19)C31—N32—C33—C34−1.4 (4)
N5—C20—C21—C26141.8 (2)N32—C33—C34—C351.4 (5)
N5—C20—C21—C22−41.6 (3)C33—C34—C35—C36−0.2 (4)
C26—C21—C22—O20−179.9 (2)C34—C35—C36—C31−0.7 (4)
C20—C21—C22—O203.4 (4)N32—C31—C36—C350.7 (4)
C26—C21—C22—C23−0.5 (4)C30—C31—C36—C35−179.7 (2)
D—H···AD—HH···AD···AD—H···A
O10—H10···N11.021.692.624 (3)150
O20—H20···N51.091.722.705 (3)148
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O10—H10⋯N11.021.692.624 (3)150
O20—H20⋯N51.091.722.705 (3)148
  4 in total

1.  Retrieval of crystallographically-derived molecular geometry information.

Authors:  Ian J Bruno; Jason C Cole; Magnus Kessler; Jie Luo; W D Sam Motherwell; Lucy H Purkis; Barry R Smith; Robin Taylor; Richard I Cooper; Stephanie E Harris; A Guy Orpen
Journal:  J Chem Inf Comput Sci       Date:  2004 Nov-Dec

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Syntheses, X-ray structures, solid state high-field electron paramagnetic resonance, and density-functional theory investigations on chloro and aqua Mn(II) mononuclear complexes with amino-pyridine pentadentate ligands.

Authors:  Christelle Hureau; Sihem Groni; Régis Guillot; Geneviève Blondin; Carole Duboc; Elodie Anxolabéhère-Mallart
Journal:  Inorg Chem       Date:  2008-09-26       Impact factor: 5.165

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total

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