Literature DB >> 22969623

3,5,6-Trimethyl-thieno[2,3-d]pyrimidin-4(3H)-one.

Khamroqul Khatamov, Fozil Saitqulov, Jamshid Ashurov, Khusnutdin Shakhidoyatov.   

Abstract

In the title compound, C(9)H(10)N(2)OS, the thienopyrimidine ring system is almost planar [greatest deviation from the mean plane = 0.0318 (13) Å for the S atom]. The crystal packing features C-H⋯O hydrogen bonds and π-π stacking inter-actions between inversion-related pairs of mol-ecules with a centroid-centroid distance of 3.530 (3) Å.

Entities:  

Year:  2012        PMID: 22969623      PMCID: PMC3435752          DOI: 10.1107/S1600536812035416

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis, properties and biological activity of pyrim­idinone derivatives, see: Litvinov (2004 ▶); Al-Taisan et al. (2010 ▶). For the crystal and mol­ecular structures of related compounds, see: Tashkhodzhaev et al. (2002 ▶).

Experimental

Crystal data

C9H10N2OS M = 194.25 Monoclinic, a = 8.027 (3) Å b = 10.706 (5) Å c = 10.907 (3) Å β = 97.333 (3)° V = 929.7 (6) Å3 Z = 4 Cu Kα radiation μ = 2.77 mm−1 T = 293 K 0.42 × 0.36 × 0.28 mm

Data collection

Oxford Diffraction Xcalibur Ruby diffractometer Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009 ▶) T min = 0.324, T max = 1.000 2983 measured reflections 1588 independent reflections 1208 reflections with I > 2σ(I) R int = 0.029

Refinement

R[F 2 > 2σ(F 2)] = 0.050 wR(F 2) = 0.151 S = 1.05 1588 reflections 122 parameters H-atom parameters constrained Δρmax = 0.27 e Å−3 Δρmin = −0.22 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2009 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: XP in SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812035416/aa2064sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812035416/aa2064Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812035416/aa2064Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C9H10N2OSF(000) = 408
Mr = 194.25Dx = 1.388 Mg m3
Monoclinic, P21/cCu Kα radiation, λ = 1.54184 Å
Hall symbol: -P 2ybcCell parameters from 185 reflections
a = 8.027 (3) Åθ = 4.1–43.7°
b = 10.706 (5) ŵ = 2.77 mm1
c = 10.907 (3) ÅT = 293 K
β = 97.333 (3)°Block, colourless
V = 929.7 (6) Å30.42 × 0.36 × 0.28 mm
Z = 4
Oxford Diffraction Xcalibur Ruby diffractometer1588 independent reflections
Radiation source: fine-focus sealed tube1208 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.029
Detector resolution: 10.2576 pixels mm-1θmax = 67.2°, θmin = 5.6°
ω scansh = −8→9
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009)k = −12→12
Tmin = 0.324, Tmax = 1.000l = −13→11
2983 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.050H-atom parameters constrained
wR(F2) = 0.151w = 1/[σ2(Fo2) + (0.1022P)2 + 0.0132P] where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max < 0.001
1588 reflectionsΔρmax = 0.27 e Å3
122 parametersΔρmin = −0.22 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0070 (14)
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.3074 (3)0.1156 (2)0.4761 (3)0.0448 (7)
C20.4524 (4)0.1684 (3)0.6555 (3)0.0559 (8)
H20.51980.22390.70520.067*
C30.3198 (3)−0.0372 (3)0.6401 (2)0.0467 (7)
C40.2664 (3)−0.0020 (2)0.5153 (2)0.0396 (6)
C50.1683 (3)−0.0728 (2)0.4196 (2)0.0446 (7)
C60.1362 (4)−0.0066 (3)0.3125 (2)0.0498 (7)
C70.4735 (4)0.0352 (4)0.8380 (3)0.0693 (10)
H7A0.38080.00840.87910.104*
H7B0.51950.11090.87540.104*
H7C0.5584−0.02850.84540.104*
C80.1125 (4)−0.2045 (3)0.4345 (3)0.0615 (8)
H8A0.0263−0.20620.48790.092*
H8B0.2062−0.25390.46990.092*
H8C0.0690−0.23790.35510.092*
C90.0413 (4)−0.0454 (4)0.1917 (3)0.0694 (9)
H9A−0.0690−0.00910.18310.104*
H9B0.0319−0.13480.18900.104*
H9C0.0998−0.01730.12540.104*
N10.4025 (3)0.2028 (2)0.5443 (2)0.0537 (6)
N20.4153 (3)0.0576 (2)0.7075 (2)0.0505 (6)
O10.2922 (3)−0.13487 (19)0.69116 (18)0.0595 (6)
S10.22443 (10)0.14187 (7)0.32561 (6)0.0543 (3)
U11U22U33U12U13U23
C10.0458 (16)0.0418 (14)0.0482 (15)0.0049 (11)0.0116 (12)−0.0006 (11)
C20.0553 (19)0.0501 (17)0.062 (2)0.0007 (13)0.0055 (14)−0.0163 (14)
C30.0443 (16)0.0495 (16)0.0468 (15)0.0075 (12)0.0074 (12)−0.0022 (12)
C40.0368 (14)0.0398 (14)0.0430 (14)0.0064 (10)0.0081 (11)0.0000 (10)
C50.0427 (16)0.0448 (15)0.0470 (15)0.0027 (11)0.0083 (12)−0.0010 (11)
C60.0476 (17)0.0553 (17)0.0458 (15)0.0063 (13)0.0036 (12)−0.0013 (12)
C70.073 (2)0.088 (3)0.0436 (17)0.0157 (18)−0.0037 (15)−0.0115 (15)
C80.067 (2)0.0505 (17)0.067 (2)−0.0105 (14)0.0080 (16)−0.0035 (14)
C90.072 (2)0.083 (2)0.0512 (18)−0.0023 (18)−0.0023 (15)−0.0075 (16)
N10.0568 (15)0.0428 (13)0.0613 (16)0.0001 (11)0.0071 (12)−0.0060 (11)
N20.0519 (14)0.0564 (15)0.0419 (13)0.0091 (11)0.0006 (10)−0.0089 (10)
O10.0688 (15)0.0553 (13)0.0531 (12)0.0013 (10)0.0025 (10)0.0164 (9)
S10.0631 (6)0.0502 (5)0.0493 (5)0.0040 (3)0.0068 (3)0.0099 (3)
C1—N11.365 (4)C6—C91.494 (4)
C1—C41.382 (4)C6—S11.739 (3)
C1—S11.714 (3)C7—N21.461 (4)
C2—N11.282 (4)C7—H7A0.9600
C2—N21.364 (4)C7—H7B0.9600
C2—H20.9300C7—H7C0.9600
C3—O11.218 (3)C8—H8A0.9600
C3—N21.419 (4)C8—H8B0.9600
C3—C41.424 (4)C8—H8C0.9600
C4—C51.441 (3)C9—H9A0.9600
C5—C61.362 (4)C9—H9B0.9600
C5—C81.495 (4)C9—H9C0.9600
N1—C1—C4126.3 (3)N2—C7—H7C109.5
N1—C1—S1122.1 (2)H7A—C7—H7C109.5
C4—C1—S1111.6 (2)H7B—C7—H7C109.5
N1—C2—N2125.8 (3)C5—C8—H8A109.5
N1—C2—H2117.1C5—C8—H8B109.5
N2—C2—H2117.1H8A—C8—H8B109.5
O1—C3—N2119.6 (3)C5—C8—H8C109.5
O1—C3—C4127.9 (3)H8A—C8—H8C109.5
N2—C3—C4112.4 (2)H8B—C8—H8C109.5
C1—C4—C3118.9 (2)C6—C9—H9A109.5
C1—C4—C5112.6 (2)C6—C9—H9B109.5
C3—C4—C5128.5 (2)H9A—C9—H9B109.5
C6—C5—C4112.0 (2)C6—C9—H9C109.5
C6—C5—C8123.8 (3)H9A—C9—H9C109.5
C4—C5—C8124.2 (2)H9B—C9—H9C109.5
C5—C6—C9129.1 (3)C2—N1—C1113.8 (3)
C5—C6—S1112.0 (2)C2—N2—C3122.6 (2)
C9—C6—S1118.9 (2)C2—N2—C7119.2 (3)
N2—C7—H7A109.5C3—N2—C7118.2 (3)
N2—C7—H7B109.5C1—S1—C691.90 (13)
H7A—C7—H7B109.5
D—H···AD—HH···AD···AD—H···A
C2—H2···O1i0.932.323.250 (4)173
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C2—H2⋯O1i 0.932.323.250 (4)173

Symmetry code: (i) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis, characterization and biological studies of some novel thieno[2,3-d]pyrimidines.

Authors:  Khulud M Al-Taisan; Hassan M A Al-Hazimi; Shar S Al-Shihry
Journal:  Molecules       Date:  2010-06-01       Impact factor: 4.411

  2 in total

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