| Literature DB >> 22969623 |
Khamroqul Khatamov, Fozil Saitqulov, Jamshid Ashurov, Khusnutdin Shakhidoyatov.
Abstract
In the title compound, C(9)H(10)N(2)OS, the thienopyrimidine ring system is almost planar [greatest deviation from the mean plane = 0.0318 (13) Å for the S atom]. The crystal packing features C-H⋯O hydrogen bonds and π-π stacking inter-actions between inversion-related pairs of mol-ecules with a centroid-centroid distance of 3.530 (3) Å.Entities:
Year: 2012 PMID: 22969623 PMCID: PMC3435752 DOI: 10.1107/S1600536812035416
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C9H10N2OS | |
| Monoclinic, | Cu |
| Hall symbol: -P 2ybc | Cell parameters from 185 reflections |
| θ = 4.1–43.7° | |
| µ = 2.77 mm−1 | |
| β = 97.333 (3)° | Block, colourless |
| 0.42 × 0.36 × 0.28 mm | |
| Oxford Diffraction Xcalibur Ruby diffractometer | 1588 independent reflections |
| Radiation source: fine-focus sealed tube | 1208 reflections with |
| Graphite monochromator | |
| Detector resolution: 10.2576 pixels mm-1 | θmax = 67.2°, θmin = 5.6° |
| ω scans | |
| Absorption correction: multi-scan ( | |
| 2983 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max < 0.001 | |
| 1588 reflections | Δρmax = 0.27 e Å−3 |
| 122 parameters | Δρmin = −0.22 e Å−3 |
| 0 restraints | Extinction correction: |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0070 (14) |
| Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
| Refinement. Refinement of |
| C1 | 0.3074 (3) | 0.1156 (2) | 0.4761 (3) | 0.0448 (7) | |
| C2 | 0.4524 (4) | 0.1684 (3) | 0.6555 (3) | 0.0559 (8) | |
| H2 | 0.5198 | 0.2239 | 0.7052 | 0.067* | |
| C3 | 0.3198 (3) | −0.0372 (3) | 0.6401 (2) | 0.0467 (7) | |
| C4 | 0.2664 (3) | −0.0020 (2) | 0.5153 (2) | 0.0396 (6) | |
| C5 | 0.1683 (3) | −0.0728 (2) | 0.4196 (2) | 0.0446 (7) | |
| C6 | 0.1362 (4) | −0.0066 (3) | 0.3125 (2) | 0.0498 (7) | |
| C7 | 0.4735 (4) | 0.0352 (4) | 0.8380 (3) | 0.0693 (10) | |
| H7A | 0.3808 | 0.0084 | 0.8791 | 0.104* | |
| H7B | 0.5195 | 0.1109 | 0.8754 | 0.104* | |
| H7C | 0.5584 | −0.0285 | 0.8454 | 0.104* | |
| C8 | 0.1125 (4) | −0.2045 (3) | 0.4345 (3) | 0.0615 (8) | |
| H8A | 0.0263 | −0.2062 | 0.4879 | 0.092* | |
| H8B | 0.2062 | −0.2539 | 0.4699 | 0.092* | |
| H8C | 0.0690 | −0.2379 | 0.3551 | 0.092* | |
| C9 | 0.0413 (4) | −0.0454 (4) | 0.1917 (3) | 0.0694 (9) | |
| H9A | −0.0690 | −0.0091 | 0.1831 | 0.104* | |
| H9B | 0.0319 | −0.1348 | 0.1890 | 0.104* | |
| H9C | 0.0998 | −0.0173 | 0.1254 | 0.104* | |
| N1 | 0.4025 (3) | 0.2028 (2) | 0.5443 (2) | 0.0537 (6) | |
| N2 | 0.4153 (3) | 0.0576 (2) | 0.7075 (2) | 0.0505 (6) | |
| O1 | 0.2922 (3) | −0.13487 (19) | 0.69116 (18) | 0.0595 (6) | |
| S1 | 0.22443 (10) | 0.14187 (7) | 0.32561 (6) | 0.0543 (3) |
| C1 | 0.0458 (16) | 0.0418 (14) | 0.0482 (15) | 0.0049 (11) | 0.0116 (12) | −0.0006 (11) |
| C2 | 0.0553 (19) | 0.0501 (17) | 0.062 (2) | 0.0007 (13) | 0.0055 (14) | −0.0163 (14) |
| C3 | 0.0443 (16) | 0.0495 (16) | 0.0468 (15) | 0.0075 (12) | 0.0074 (12) | −0.0022 (12) |
| C4 | 0.0368 (14) | 0.0398 (14) | 0.0430 (14) | 0.0064 (10) | 0.0081 (11) | 0.0000 (10) |
| C5 | 0.0427 (16) | 0.0448 (15) | 0.0470 (15) | 0.0027 (11) | 0.0083 (12) | −0.0010 (11) |
| C6 | 0.0476 (17) | 0.0553 (17) | 0.0458 (15) | 0.0063 (13) | 0.0036 (12) | −0.0013 (12) |
| C7 | 0.073 (2) | 0.088 (3) | 0.0436 (17) | 0.0157 (18) | −0.0037 (15) | −0.0115 (15) |
| C8 | 0.067 (2) | 0.0505 (17) | 0.067 (2) | −0.0105 (14) | 0.0080 (16) | −0.0035 (14) |
| C9 | 0.072 (2) | 0.083 (2) | 0.0512 (18) | −0.0023 (18) | −0.0023 (15) | −0.0075 (16) |
| N1 | 0.0568 (15) | 0.0428 (13) | 0.0613 (16) | 0.0001 (11) | 0.0071 (12) | −0.0060 (11) |
| N2 | 0.0519 (14) | 0.0564 (15) | 0.0419 (13) | 0.0091 (11) | 0.0006 (10) | −0.0089 (10) |
| O1 | 0.0688 (15) | 0.0553 (13) | 0.0531 (12) | 0.0013 (10) | 0.0025 (10) | 0.0164 (9) |
| S1 | 0.0631 (6) | 0.0502 (5) | 0.0493 (5) | 0.0040 (3) | 0.0068 (3) | 0.0099 (3) |
| C1—N1 | 1.365 (4) | C6—C9 | 1.494 (4) |
| C1—C4 | 1.382 (4) | C6—S1 | 1.739 (3) |
| C1—S1 | 1.714 (3) | C7—N2 | 1.461 (4) |
| C2—N1 | 1.282 (4) | C7—H7A | 0.9600 |
| C2—N2 | 1.364 (4) | C7—H7B | 0.9600 |
| C2—H2 | 0.9300 | C7—H7C | 0.9600 |
| C3—O1 | 1.218 (3) | C8—H8A | 0.9600 |
| C3—N2 | 1.419 (4) | C8—H8B | 0.9600 |
| C3—C4 | 1.424 (4) | C8—H8C | 0.9600 |
| C4—C5 | 1.441 (3) | C9—H9A | 0.9600 |
| C5—C6 | 1.362 (4) | C9—H9B | 0.9600 |
| C5—C8 | 1.495 (4) | C9—H9C | 0.9600 |
| N1—C1—C4 | 126.3 (3) | N2—C7—H7C | 109.5 |
| N1—C1—S1 | 122.1 (2) | H7A—C7—H7C | 109.5 |
| C4—C1—S1 | 111.6 (2) | H7B—C7—H7C | 109.5 |
| N1—C2—N2 | 125.8 (3) | C5—C8—H8A | 109.5 |
| N1—C2—H2 | 117.1 | C5—C8—H8B | 109.5 |
| N2—C2—H2 | 117.1 | H8A—C8—H8B | 109.5 |
| O1—C3—N2 | 119.6 (3) | C5—C8—H8C | 109.5 |
| O1—C3—C4 | 127.9 (3) | H8A—C8—H8C | 109.5 |
| N2—C3—C4 | 112.4 (2) | H8B—C8—H8C | 109.5 |
| C1—C4—C3 | 118.9 (2) | C6—C9—H9A | 109.5 |
| C1—C4—C5 | 112.6 (2) | C6—C9—H9B | 109.5 |
| C3—C4—C5 | 128.5 (2) | H9A—C9—H9B | 109.5 |
| C6—C5—C4 | 112.0 (2) | C6—C9—H9C | 109.5 |
| C6—C5—C8 | 123.8 (3) | H9A—C9—H9C | 109.5 |
| C4—C5—C8 | 124.2 (2) | H9B—C9—H9C | 109.5 |
| C5—C6—C9 | 129.1 (3) | C2—N1—C1 | 113.8 (3) |
| C5—C6—S1 | 112.0 (2) | C2—N2—C3 | 122.6 (2) |
| C9—C6—S1 | 118.9 (2) | C2—N2—C7 | 119.2 (3) |
| N2—C7—H7A | 109.5 | C3—N2—C7 | 118.2 (3) |
| N2—C7—H7B | 109.5 | C1—S1—C6 | 91.90 (13) |
| H7A—C7—H7B | 109.5 |
| H··· | ||||
| C2—H2···O1i | 0.93 | 2.32 | 3.250 (4) | 173 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| C2—H2⋯O1i | 0.93 | 2.32 | 3.250 (4) | 173 |
Symmetry code: (i) .