Literature DB >> 22969606

2-[7-(3,5-Dibromo-2-hy-droxy-phen-yl)-6-eth-oxy-carbonyl-2-oxo-5H-2,3,6,7-tetra-hydro-thio-pyrano[2,3-d][1,3]thia-zol-6-yl]acetic acid ethanol monosolvate.

M Kowiel, N Zelisko, D Atamanyuk, R Lesyk, A K Gzella.   

Abstract

The title compound, C(17)H(15)Br(2)NO(6)S(2)·C(2)H(5)OH, is the esterification reaction product of 2-(8,10-dibromo-2,6-dioxo-3,5,5a,11b-tetra-hydro-2H,6H-chromeno[4',3':4,5]thio-pyrano[2,3-d]thia-zol-5a-yl)acetic acid. Cleavage of the lactone ring and formation of eth-oxy-carbonyl and hy-droxy groups from its structural elements were observed. On the other hand, the carb-oxy-methyl group was not esterified. The H atom and carb-oxy-methyl group, both at stereogenic centres, show a cis conformation. The six-membered dihydro-thio-pyran ring adopts a half-chair conformation. All NH and OH groups participate in the three-dimensional hydrogen-bond network, which is additionally strengthened by C-H⋯O and C-H⋯S inter-actions. Intramolecular O-H⋯Br and C-H⋯O interactions also occur.

Entities:  

Year:  2012        PMID: 22969606      PMCID: PMC3435735          DOI: 10.1107/S1600536812035325

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of 4-thia­zolidinone and thio­pyrano[2,3-d]thia­zole-2-one derivatives, see: Lesyk & Zimenkovsky (2004 ▶); Lesyk et al. (2011 ▶); Kaminskyy et al. (2011 ▶); Matiychuk et al. (2008 ▶); Lesyk et al. (2006 ▶); Atamanyuk et al. (2008 ▶). For ring conformation analysis, see: Cremer & Pople (1975 ▶). For bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C17H15Br2NO6S2·C2H6O M = 599.31 Monoclinic, a = 16.8176 (9) Å b = 8.1654 (4) Å c = 18.3841 (9) Å β = 113.303 (6)° V = 2318.6 (2) Å3 Z = 4 Mo Kα radiation μ = 3.72 mm−1 T = 130 K 0.45 × 0.40 × 0.25 mm

Data collection

Oxford Diffraction Xcalibur Atlas diffractometer Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009 ▶) T min = 0.761, T max = 1.000 15312 measured reflections 5539 independent reflections 4500 reflections with I > 2σ(I) R int = 0.022

Refinement

R[F 2 > 2σ(F 2)] = 0.027 wR(F 2) = 0.073 S = 1.09 5539 reflections 298 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 1.08 e Å−3 Δρmin = −0.87 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2009 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812035325/bt5997sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812035325/bt5997Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H15Br2NO6S2·C2H6OF(000) = 1200
Mr = 599.31Dx = 1.717 Mg m3
Monoclinic, P21/nMelting point = 510–512 K
Hall symbol: -P 2ynMo Kα radiation, λ = 0.71073 Å
a = 16.8176 (9) ÅCell parameters from 6534 reflections
b = 8.1654 (4) Åθ = 2.4–29.1°
c = 18.3841 (9) ŵ = 3.72 mm1
β = 113.303 (6)°T = 130 K
V = 2318.6 (2) Å3Block, colourless
Z = 40.45 × 0.40 × 0.25 mm
Oxford Diffraction Xcalibur Atlas diffractometer5539 independent reflections
Radiation source: Enhance (Mo) X-ray Source4500 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.022
ω scansθmax = 29.1°, θmin = 2.4°
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009)h = −22→22
Tmin = 0.761, Tmax = 1.000k = −10→11
15312 measured reflectionsl = −24→24
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.027Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.073H atoms treated by a mixture of independent and constrained refinement
S = 1.09w = 1/[σ2(Fo2) + (0.044P)2] where P = (Fo2 + 2Fc2)/3
5539 reflections(Δ/σ)max = 0.002
298 parametersΔρmax = 1.08 e Å3
0 restraintsΔρmin = −0.87 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br10.996319 (13)0.62878 (3)0.839566 (12)0.03491 (8)
Br21.074501 (12)0.35750 (3)0.592151 (13)0.02712 (7)
S10.75077 (3)0.80961 (6)0.48078 (3)0.01618 (11)
C20.71841 (11)0.8163 (2)0.37660 (11)0.0157 (4)
N30.69780 (10)0.66259 (19)0.34724 (9)0.0148 (3)
H30.6864 (14)0.639 (3)0.2971 (14)0.017 (6)*
C40.70683 (11)0.5421 (2)0.40400 (10)0.0126 (4)
S50.68259 (3)0.33898 (6)0.37237 (3)0.01932 (11)
C60.72417 (12)0.2434 (2)0.46983 (11)0.0144 (4)
H6A0.70100.13320.46470.017*
H6B0.78660.23450.48840.017*
C70.70239 (11)0.3352 (2)0.53289 (10)0.0115 (3)
C80.74732 (10)0.5062 (2)0.55304 (10)0.0104 (3)
H80.71830.56820.58120.013*
C90.73311 (11)0.5980 (2)0.47848 (10)0.0115 (4)
O100.71500 (8)0.94164 (17)0.33849 (8)0.0213 (3)
C110.60359 (11)0.3610 (2)0.50519 (11)0.0140 (4)
H11A0.59270.43310.54220.017*
H11B0.58160.41400.45380.017*
C120.55580 (11)0.2028 (2)0.49939 (11)0.0156 (4)
O130.59224 (8)0.07109 (16)0.51734 (8)0.0178 (3)
O140.47090 (8)0.22172 (18)0.47434 (9)0.0224 (3)
H140.4454 (16)0.132 (3)0.4748 (16)0.037 (8)*
C150.73196 (11)0.2392 (2)0.61104 (11)0.0132 (4)
O160.70277 (8)0.26568 (16)0.66029 (7)0.0182 (3)
O170.79311 (8)0.12991 (15)0.61807 (8)0.0171 (3)
C180.82447 (13)0.0290 (3)0.69041 (12)0.0246 (5)
H18A0.8501−0.07060.68070.030*
H18B0.7759−0.00160.70330.030*
C190.89052 (17)0.1187 (3)0.75959 (15)0.0419 (7)
H19A0.86330.20950.77380.063*
H19B0.93610.15830.74520.063*
H19C0.91430.04550.80380.063*
C200.84402 (11)0.4998 (2)0.60762 (10)0.0112 (3)
C210.87065 (11)0.5535 (2)0.68594 (10)0.0133 (4)
C220.95879 (12)0.5481 (3)0.73445 (10)0.0186 (4)
C231.02008 (11)0.4888 (3)0.70848 (11)0.0202 (4)
H231.07830.48370.74230.024*
C240.99208 (12)0.4375 (2)0.63082 (12)0.0173 (4)
C250.90546 (11)0.4444 (2)0.58003 (11)0.0143 (4)
H250.88830.41220.52750.017*
O260.80868 (9)0.61034 (17)0.70964 (8)0.0207 (3)
H260.8325 (17)0.644 (3)0.7654 (17)0.046 (8)*
O270.84716 (10)1.0647 (2)0.30489 (9)0.0325 (4)
H270.8036 (16)1.032 (3)0.3155 (15)0.041 (7)*
C280.91066 (14)1.1225 (3)0.37811 (13)0.0307 (5)
H28A0.90571.06340.42190.037*
H28B0.90161.23800.38450.037*
C290.99888 (15)1.0965 (3)0.37809 (17)0.0432 (7)
H29A1.00850.98150.37440.065*
H29B1.04191.13920.42620.065*
H29C1.00271.15230.33360.065*
U11U22U33U12U13U23
Br10.01994 (11)0.0685 (2)0.01402 (10)−0.00743 (10)0.00428 (8)−0.01027 (10)
Br20.01891 (11)0.03218 (14)0.03580 (13)0.00589 (9)0.01672 (9)0.00288 (10)
S10.0194 (2)0.0091 (2)0.0160 (2)−0.00223 (18)0.00270 (18)0.00152 (18)
C20.0100 (8)0.0176 (10)0.0185 (9)0.0012 (7)0.0047 (7)0.0051 (8)
N30.0163 (8)0.0157 (8)0.0126 (7)0.0013 (6)0.0059 (6)0.0032 (6)
C40.0135 (8)0.0123 (9)0.0132 (8)0.0003 (7)0.0064 (7)0.0008 (7)
S50.0323 (3)0.0126 (2)0.0124 (2)−0.0027 (2)0.00818 (19)−0.00275 (18)
C60.0185 (9)0.0100 (9)0.0158 (8)−0.0028 (7)0.0079 (7)−0.0002 (7)
C70.0128 (8)0.0092 (8)0.0132 (8)−0.0004 (7)0.0057 (7)0.0013 (7)
C80.0116 (8)0.0093 (9)0.0109 (8)−0.0008 (7)0.0051 (6)−0.0008 (7)
C90.0108 (8)0.0076 (8)0.0153 (8)−0.0006 (7)0.0045 (7)0.0007 (7)
O100.0198 (7)0.0173 (7)0.0241 (7)−0.0006 (6)0.0058 (6)0.0102 (6)
C110.0137 (8)0.0120 (9)0.0165 (9)−0.0002 (7)0.0062 (7)0.0002 (7)
C120.0138 (8)0.0191 (10)0.0140 (8)−0.0025 (8)0.0057 (7)−0.0006 (8)
O130.0160 (6)0.0110 (7)0.0258 (7)−0.0024 (5)0.0076 (5)0.0003 (6)
O140.0144 (7)0.0158 (7)0.0340 (8)−0.0040 (6)0.0064 (6)0.0028 (6)
C150.0130 (8)0.0094 (9)0.0164 (8)−0.0032 (7)0.0050 (7)0.0008 (7)
O160.0245 (7)0.0170 (7)0.0161 (6)0.0012 (6)0.0114 (6)0.0035 (5)
O170.0189 (6)0.0149 (7)0.0186 (7)0.0055 (5)0.0087 (5)0.0077 (5)
C180.0277 (11)0.0191 (11)0.0273 (11)0.0066 (9)0.0112 (9)0.0122 (9)
C190.0368 (13)0.0460 (16)0.0305 (13)0.0038 (11)0.0001 (11)0.0122 (11)
C200.0132 (8)0.0084 (8)0.0120 (8)−0.0019 (7)0.0051 (7)0.0016 (7)
C210.0147 (8)0.0132 (9)0.0139 (8)−0.0030 (7)0.0075 (7)0.0007 (7)
C220.0176 (9)0.0250 (11)0.0104 (8)−0.0043 (8)0.0024 (7)−0.0002 (8)
C230.0123 (9)0.0271 (11)0.0183 (9)−0.0019 (8)0.0028 (7)0.0053 (8)
C240.0141 (8)0.0182 (10)0.0227 (9)0.0013 (8)0.0106 (7)0.0036 (8)
C250.0158 (9)0.0120 (9)0.0160 (8)−0.0018 (7)0.0072 (7)0.0000 (7)
O260.0204 (7)0.0289 (8)0.0149 (7)−0.0018 (6)0.0091 (6)−0.0064 (6)
O270.0262 (8)0.0515 (11)0.0188 (7)−0.0123 (8)0.0079 (6)0.0049 (7)
C280.0312 (12)0.0357 (14)0.0252 (11)−0.0081 (10)0.0111 (9)−0.0066 (10)
C290.0270 (12)0.0459 (16)0.0511 (16)−0.0037 (11)0.0094 (11)0.0067 (13)
Br1—C221.8980 (18)C15—O171.329 (2)
Br2—C241.9061 (19)O17—C181.473 (2)
S1—C91.7510 (18)C18—C191.507 (3)
S1—C21.773 (2)C18—H18A0.9700
C2—O101.229 (2)C18—H18B0.9700
C2—N31.356 (3)C19—H19A0.9600
N3—C41.398 (2)C19—H19B0.9600
N3—H30.88 (2)C19—H19C0.9600
C4—C91.342 (2)C20—C251.394 (3)
C4—S51.7515 (19)C20—C211.398 (2)
S5—C61.8212 (19)C21—O261.361 (2)
C6—C71.541 (3)C21—C221.396 (2)
C6—H6A0.9700C22—C231.383 (3)
C6—H6B0.9700C23—C241.380 (3)
C7—C151.536 (2)C23—H230.9300
C7—C111.548 (2)C24—C251.386 (2)
C7—C81.561 (2)C25—H250.9300
C8—C91.496 (2)O26—H260.98 (3)
C8—C201.537 (2)O27—C281.427 (3)
C8—H80.9800O27—H270.87 (3)
C11—C121.503 (3)C28—C291.499 (3)
C11—H11A0.9700C28—H28A0.9700
C11—H11B0.9700C28—H28B0.9700
C12—O131.217 (2)C29—H29A0.9600
C12—O141.325 (2)C29—H29B0.9600
O14—H140.85 (3)C29—H29C0.9600
C15—O161.208 (2)
C9—S1—C291.59 (9)C15—O17—C18116.76 (15)
O10—C2—N3126.65 (18)O17—C18—C19111.79 (18)
O10—C2—S1124.54 (16)O17—C18—H18A109.3
N3—C2—S1108.81 (14)C19—C18—H18A109.3
C2—N3—C4114.77 (16)O17—C18—H18B109.3
C2—N3—H3122.1 (14)C19—C18—H18B109.3
C4—N3—H3122.6 (14)H18A—C18—H18B107.9
C9—C4—N3114.66 (17)C18—C19—H19A109.5
C9—C4—S5126.90 (15)C18—C19—H19B109.5
N3—C4—S5118.44 (13)H19A—C19—H19B109.5
C4—S5—C697.51 (8)C18—C19—H19C109.5
C7—C6—S5114.75 (12)H19A—C19—H19C109.5
C7—C6—H6A108.6H19B—C19—H19C109.5
S5—C6—H6A108.6C25—C20—C21119.64 (15)
C7—C6—H6B108.6C25—C20—C8121.24 (15)
S5—C6—H6B108.6C21—C20—C8119.12 (15)
H6A—C6—H6B107.6O26—C21—C22124.10 (16)
C15—C7—C6111.71 (14)O26—C21—C20117.57 (15)
C15—C7—C11106.57 (14)C22—C21—C20118.33 (16)
C6—C7—C11111.24 (14)C23—C22—C21122.58 (17)
C15—C7—C8106.69 (13)C23—C22—Br1118.67 (13)
C6—C7—C8112.13 (14)C21—C22—Br1118.74 (14)
C11—C7—C8108.21 (14)C24—C23—C22117.86 (16)
C9—C8—C20111.07 (14)C24—C23—H23121.1
C9—C8—C7110.11 (14)C22—C23—H23121.1
C20—C8—C7114.34 (13)C23—C24—C25121.48 (18)
C9—C8—H8107.0C23—C24—Br2119.28 (14)
C20—C8—H8107.0C25—C24—Br2119.23 (15)
C7—C8—H8107.0C24—C25—C20120.06 (17)
C4—C9—C8129.31 (16)C24—C25—H25120.0
C4—C9—S1110.15 (14)C20—C25—H25120.0
C8—C9—S1120.54 (13)C21—O26—H26112.4 (16)
C12—C11—C7112.39 (15)C28—O27—H27105.8 (17)
C12—C11—H11A109.1O27—C28—C29108.9 (2)
C7—C11—H11A109.1O27—C28—H28A109.9
C12—C11—H11B109.1C29—C28—H28A109.9
C7—C11—H11B109.1O27—C28—H28B109.9
H11A—C11—H11B107.9C29—C28—H28B109.9
O13—C12—O14123.74 (17)H28A—C28—H28B108.3
O13—C12—C11122.87 (16)C28—C29—H29A109.5
O14—C12—C11113.39 (16)C28—C29—H29B109.5
C12—O14—H14112.1 (17)H29A—C29—H29B109.5
O16—C15—O17125.14 (17)C28—C29—H29C109.5
O16—C15—C7122.17 (16)H29A—C29—H29C109.5
O17—C15—C7112.67 (15)H29B—C29—H29C109.5
C9—S1—C2—O10178.68 (17)C7—C11—C12—O132.3 (3)
C9—S1—C2—N3−0.71 (14)C7—C11—C12—O14−178.81 (15)
O10—C2—N3—C4−179.39 (17)C6—C7—C15—O16−160.59 (16)
S1—C2—N3—C4−0.01 (19)C11—C7—C15—O16−38.9 (2)
C2—N3—C4—C91.0 (2)C8—C7—C15—O1676.5 (2)
C2—N3—C4—S5−179.55 (13)C6—C7—C15—O1720.9 (2)
C9—C4—S5—C6−10.25 (18)C11—C7—C15—O17142.56 (15)
N3—C4—S5—C6170.43 (14)C8—C7—C15—O17−102.00 (16)
C4—S5—C6—C741.76 (14)O16—C15—O17—C182.8 (3)
S5—C6—C7—C15174.57 (12)C7—C15—O17—C18−178.74 (15)
S5—C6—C7—C1155.62 (17)C15—O17—C18—C19−81.1 (2)
S5—C6—C7—C8−65.71 (16)C9—C8—C20—C25−52.6 (2)
C15—C7—C8—C9171.17 (14)C7—C8—C20—C2572.8 (2)
C6—C7—C8—C948.57 (19)C9—C8—C20—C21126.18 (18)
C11—C7—C8—C9−74.49 (18)C7—C8—C20—C21−108.48 (18)
C15—C7—C8—C2045.32 (19)C25—C20—C21—O26178.33 (16)
C6—C7—C8—C20−77.29 (18)C8—C20—C21—O26−0.5 (2)
C11—C7—C8—C20159.65 (15)C25—C20—C21—C22−0.7 (3)
N3—C4—C9—C8178.26 (16)C8—C20—C21—C22−179.45 (16)
S5—C4—C9—C8−1.1 (3)O26—C21—C22—C23179.74 (18)
N3—C4—C9—S1−1.5 (2)C20—C21—C22—C23−1.3 (3)
S5—C4—C9—S1179.11 (11)O26—C21—C22—Br1−1.4 (3)
C20—C8—C9—C4111.4 (2)C20—C21—C22—Br1177.50 (14)
C7—C8—C9—C4−16.3 (3)C21—C22—C23—C241.7 (3)
C20—C8—C9—S1−68.83 (18)Br1—C22—C23—C24−177.11 (15)
C7—C8—C9—S1163.48 (12)C22—C23—C24—C25−0.1 (3)
C2—S1—C9—C41.28 (14)C22—C23—C24—Br2179.24 (15)
C2—S1—C9—C8−178.54 (14)C23—C24—C25—C20−1.8 (3)
C15—C7—C11—C12−54.49 (19)Br2—C24—C25—C20178.81 (14)
C6—C7—C11—C1267.49 (19)C21—C20—C25—C242.2 (3)
C8—C7—C11—C12−168.91 (14)C8—C20—C25—C24−179.02 (16)
D—H···AD—HH···AD···AD—H···A
O26—H26···Br10.98 (3)2.55 (3)3.1181 (15)117 (2)
C6—H6A···O130.972.443.033 (2)119
N3—H3···O27i0.89 (2)1.83 (2)2.713 (2)171 (3)
O14—H14···O13ii0.85 (3)1.80 (3)2.645 (2)171 (3)
O26—H26···O16iii0.98 (3)1.96 (3)2.7800 (19)139 (2)
O27—H27···O100.87 (3)1.86 (3)2.724 (2)174 (2)
C6—H6A···S1iv0.972.753.5659 (17)142
C23—H23···O10v0.932.363.253 (2)161
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O26—H26⋯Br10.98 (3)2.55 (3)3.1181 (15)117 (2)
C6—H6A⋯O130.972.443.033 (2)119
N3—H3⋯O27i 0.89 (2)1.83 (2)2.713 (2)171 (3)
O14—H14⋯O13ii 0.85 (3)1.80 (3)2.645 (2)171 (3)
O26—H26⋯O16iii 0.98 (3)1.96 (3)2.7800 (19)139 (2)
O27—H27⋯O100.87 (3)1.86 (3)2.724 (2)174 (2)
C6—H6A⋯S1iv 0.972.753.5659 (17)142
C23—H23⋯O10v 0.932.363.253 (2)161

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

  3 in total

1.  Anticancer thiopyrano[2,3-d][1,3]thiazol-2-ones with norbornane moiety. Synthesis, cytotoxicity, physico-chemical properties, and computational studies.

Authors:  Roman Lesyk; Borys Zimenkovsky; Dmytro Atamanyuk; Frank Jensen; Katarzyna Kieć-Kononowicz; Andrzej Gzella
Journal:  Bioorg Med Chem       Date:  2006-05-02       Impact factor: 3.641

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  3 in total
  2 in total

Review 1.  5-Ene-4-thiazolidinones - An efficient tool in medicinal chemistry.

Authors:  Danylo Kaminskyy; Anna Kryshchyshyn; Roman Lesyk
Journal:  Eur J Med Chem       Date:  2017-09-20       Impact factor: 6.514

Review 2.  Thiopyrano[2,3-d]Thiazoles as New Efficient Scaffolds in Medicinal Chemistry.

Authors:  Anna Kryshchyshyn; Olexandra Roman; Andrii Lozynskyi; Roman Lesyk
Journal:  Sci Pharm       Date:  2018-06-14
  2 in total

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