| Literature DB >> 22969579 |
M Nawaz Tahir, Abdul Haleem Khan, Mohammad S Iqbal, Hazoor Ahmad Shad, Muhammad Yaqub.
Abstract
The title compound, C(19)H(18)N(4)O(4)S, exists as a zwitterion in the solid state, with nominal proton transfer from a phenol group to the imine N atom. The 2,3-dihy-droxy-benzaldehyde fragment is oriented at a dihedral angle of 35.51 (11)° to the adajacent aniline group and makes a dihedral angle of 76.99 (6)° with the 4,6-dimethyl-pyrimidin-2-amine group. Intra-molecular O-H⋯O and N-H⋯O hydrogen bonds close S(5) and S(6) rings, respectively; the same O atom accepts both bonds. In the crystal, polymeric chains along [001] are formed from mol-ecules joined end-to-end by N-H⋯O and O-H⋯N hydrogen bonds; these feature R(2) (3)(6) loops. The polymeric chains are linked by C-H⋯O inter-actions and there are π-π inter-actions between the pyrimidine rings with a centroid-centroid distance of 3.446 (2) Å.Entities:
Year: 2012 PMID: 22969579 PMCID: PMC3435708 DOI: 10.1107/S1600536812034757
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C19H18N4O4S | |
| Orthorhombic, | Mo |
| Hall symbol: -P 2n 2ab | Cell parameters from 1778 reflections |
| θ = 1.7–26.0° | |
| µ = 0.20 mm−1 | |
| Plate, dark red | |
| 0.34 × 0.28 × 0.15 mm |
| Bruker Kappa APEXII CCD diffractometer | 3796 independent reflections |
| Radiation source: fine-focus sealed tube | 1778 reflections with |
| Graphite monochromator | |
| Detector resolution: 8.00 pixels mm-1 | θmax = 26.0°, θmin = 1.7° |
| ω scans | |
| Absorption correction: multi-scan ( | |
| 16627 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 3796 reflections | (Δ/σ)max < 0.001 |
| 259 parameters | Δρmax = 0.21 e Å−3 |
| 0 restraints | Δρmin = −0.28 e Å−3 |
| Geometry. Bond distances, angles |
| Refinement. Refinement of |
| S1 | 0.33210 (4) | 0.16234 (8) | 0.39452 (7) | 0.0639 (3) | |
| O1 | 0.14274 (12) | 0.0303 (2) | −0.1123 (2) | 0.0874 (11) | |
| O2 | 0.07789 (15) | −0.0466 (3) | −0.2721 (3) | 0.1110 (16) | |
| O3 | 0.30024 (11) | 0.2317 (2) | 0.46012 (18) | 0.0765 (10) | |
| O4 | 0.36264 (12) | 0.0762 (2) | 0.43976 (18) | 0.0799 (10) | |
| N1 | 0.19699 (14) | −0.0123 (3) | 0.0534 (3) | 0.0683 (14) | |
| N2 | 0.37120 (13) | 0.2493 (3) | 0.3342 (2) | 0.0719 (11) | |
| N3 | 0.42863 (12) | 0.3128 (3) | 0.2071 (2) | 0.0638 (11) | |
| N4 | 0.41470 (12) | 0.1191 (3) | 0.2320 (2) | 0.0650 (12) | |
| C1 | 0.15104 (16) | −0.1524 (3) | −0.0429 (3) | 0.0673 (17) | |
| C2 | 0.13077 (16) | −0.0756 (3) | −0.1170 (3) | 0.0683 (16) | |
| C3 | 0.09721 (18) | −0.1143 (3) | −0.1978 (3) | 0.0783 (17) | |
| C4 | 0.08434 (18) | −0.2239 (4) | −0.2017 (4) | 0.091 (2) | |
| C5 | 0.10447 (18) | −0.2985 (3) | −0.1295 (4) | 0.0843 (19) | |
| C6 | 0.13772 (17) | −0.2643 (3) | −0.0517 (3) | 0.0773 (17) | |
| C7 | 0.18412 (16) | −0.1152 (3) | 0.0396 (3) | 0.0700 (17) | |
| C8 | 0.22986 (15) | 0.0266 (3) | 0.1351 (3) | 0.0567 (14) | |
| C9 | 0.27177 (16) | −0.0346 (3) | 0.1735 (3) | 0.0667 (16) | |
| C10 | 0.30228 (15) | 0.0054 (3) | 0.2545 (3) | 0.0653 (14) | |
| C11 | 0.29108 (14) | 0.1070 (3) | 0.2961 (2) | 0.0523 (12) | |
| C12 | 0.24920 (16) | 0.1698 (3) | 0.2564 (3) | 0.0633 (14) | |
| C13 | 0.21849 (16) | 0.1290 (3) | 0.1757 (3) | 0.0653 (14) | |
| C14 | 0.40682 (15) | 0.2243 (3) | 0.2534 (3) | 0.0613 (16) | |
| C15 | 0.46458 (16) | 0.2897 (3) | 0.1314 (3) | 0.0663 (16) | |
| C16 | 0.47691 (16) | 0.1837 (3) | 0.1050 (3) | 0.0730 (16) | |
| C17 | 0.45058 (16) | 0.0989 (3) | 0.1559 (3) | 0.0683 (16) | |
| C18 | 0.45913 (17) | −0.0204 (3) | 0.1284 (3) | 0.0923 (19) | |
| C19 | 0.48948 (18) | 0.3859 (3) | 0.0768 (3) | 0.0920 (19) | |
| H1 | 0.1840 (16) | 0.024 (3) | 0.010 (3) | 0.0821* | |
| H2 | 0.08717 | 0.01670 | −0.25928 | 0.1666* | |
| H2A | 0.36975 | 0.31672 | 0.35398 | 0.0861* | |
| H4 | 0.06153 | −0.24894 | −0.25413 | 0.1089* | |
| H5 | 0.09512 | −0.37230 | −0.13437 | 0.1011* | |
| H6 | 0.15163 | −0.31479 | −0.00446 | 0.0928* | |
| H7 | 0.19743 | −0.16678 | 0.08640 | 0.0841* | |
| H9 | 0.27959 | −0.10292 | 0.14484 | 0.0801* | |
| H10 | 0.33052 | −0.03633 | 0.28130 | 0.0782* | |
| H12 | 0.24188 | 0.23889 | 0.28391 | 0.0759* | |
| H13 | 0.19016 | 0.17036 | 0.14875 | 0.0779* | |
| H16 | 0.50251 | 0.16893 | 0.05389 | 0.0876* | |
| H18A | 0.43576 | −0.04011 | 0.07173 | 0.1383* | |
| H18B | 0.45100 | −0.06537 | 0.18778 | 0.1383* | |
| H18C | 0.49606 | −0.03159 | 0.10819 | 0.1383* | |
| H19A | 0.46303 | 0.42001 | 0.03270 | 0.1379* | |
| H19B | 0.51940 | 0.36133 | 0.03535 | 0.1379* | |
| H19C | 0.50198 | 0.43815 | 0.12743 | 0.1379* |
| S1 | 0.0759 (7) | 0.0645 (6) | 0.0512 (5) | −0.0047 (6) | 0.0066 (5) | −0.0030 (5) |
| O1 | 0.112 (2) | 0.0531 (16) | 0.097 (2) | 0.0023 (16) | −0.0265 (17) | −0.0057 (15) |
| O2 | 0.141 (3) | 0.080 (2) | 0.112 (3) | 0.012 (2) | −0.051 (2) | −0.016 (2) |
| O3 | 0.090 (2) | 0.0805 (18) | 0.0591 (15) | −0.0076 (15) | 0.0199 (14) | −0.0167 (14) |
| O4 | 0.099 (2) | 0.0790 (18) | 0.0618 (16) | 0.0104 (16) | −0.0146 (15) | 0.0079 (14) |
| N1 | 0.083 (3) | 0.060 (2) | 0.062 (2) | 0.0034 (19) | −0.0070 (19) | 0.0035 (18) |
| N2 | 0.081 (2) | 0.0598 (18) | 0.075 (2) | −0.0124 (17) | 0.0241 (19) | −0.0180 (17) |
| N3 | 0.066 (2) | 0.068 (2) | 0.0573 (19) | −0.0040 (17) | −0.0016 (16) | 0.0028 (16) |
| N4 | 0.065 (2) | 0.068 (2) | 0.062 (2) | −0.0039 (17) | 0.0091 (17) | −0.0125 (17) |
| C1 | 0.066 (3) | 0.062 (3) | 0.074 (3) | −0.001 (2) | 0.005 (2) | −0.007 (2) |
| C2 | 0.071 (3) | 0.057 (2) | 0.077 (3) | −0.002 (2) | −0.001 (2) | −0.019 (2) |
| C3 | 0.079 (3) | 0.070 (3) | 0.086 (3) | 0.003 (2) | −0.010 (3) | −0.015 (3) |
| C4 | 0.090 (4) | 0.073 (3) | 0.109 (4) | −0.009 (3) | −0.010 (3) | −0.029 (3) |
| C5 | 0.084 (3) | 0.059 (3) | 0.110 (4) | −0.011 (2) | 0.009 (3) | −0.017 (3) |
| C6 | 0.080 (3) | 0.059 (3) | 0.093 (3) | −0.006 (2) | 0.016 (3) | 0.000 (2) |
| C7 | 0.071 (3) | 0.062 (3) | 0.077 (3) | 0.003 (2) | 0.009 (2) | 0.005 (2) |
| C8 | 0.068 (3) | 0.051 (2) | 0.051 (2) | −0.003 (2) | −0.0007 (19) | 0.0017 (19) |
| C9 | 0.076 (3) | 0.051 (2) | 0.073 (3) | 0.009 (2) | −0.002 (2) | −0.004 (2) |
| C10 | 0.072 (3) | 0.055 (2) | 0.069 (2) | 0.008 (2) | −0.007 (2) | −0.002 (2) |
| C11 | 0.061 (2) | 0.047 (2) | 0.049 (2) | −0.0016 (18) | 0.0038 (17) | 0.0042 (17) |
| C12 | 0.086 (3) | 0.048 (2) | 0.056 (2) | 0.006 (2) | 0.013 (2) | −0.002 (2) |
| C13 | 0.076 (3) | 0.060 (2) | 0.060 (2) | 0.015 (2) | −0.001 (2) | 0.005 (2) |
| C14 | 0.061 (3) | 0.066 (3) | 0.057 (2) | −0.008 (2) | 0.002 (2) | −0.008 (2) |
| C15 | 0.061 (3) | 0.087 (3) | 0.051 (2) | −0.006 (2) | −0.004 (2) | 0.006 (2) |
| C16 | 0.071 (3) | 0.091 (3) | 0.057 (2) | 0.001 (2) | 0.009 (2) | −0.004 (2) |
| C17 | 0.068 (3) | 0.081 (3) | 0.056 (2) | 0.002 (2) | −0.002 (2) | −0.004 (2) |
| C18 | 0.106 (4) | 0.088 (3) | 0.083 (3) | 0.011 (3) | 0.017 (3) | −0.018 (3) |
| C19 | 0.095 (4) | 0.104 (3) | 0.077 (3) | −0.013 (3) | 0.018 (2) | 0.023 (3) |
| S1—O3 | 1.430 (3) | C8—C13 | 1.380 (5) |
| S1—O4 | 1.417 (3) | C9—C10 | 1.374 (5) |
| S1—N2 | 1.630 (3) | C10—C11 | 1.375 (5) |
| S1—C11 | 1.755 (3) | C11—C12 | 1.385 (5) |
| O1—C2 | 1.324 (4) | C12—C13 | 1.378 (5) |
| O2—C3 | 1.348 (5) | C15—C16 | 1.368 (5) |
| O2—H2 | 0.8200 | C15—C19 | 1.497 (5) |
| N1—C7 | 1.304 (5) | C16—C17 | 1.385 (5) |
| N1—C8 | 1.409 (5) | C17—C18 | 1.509 (5) |
| N2—C14 | 1.395 (5) | C4—H4 | 0.9300 |
| N3—C15 | 1.347 (5) | C5—H5 | 0.9300 |
| N3—C14 | 1.343 (5) | C6—H6 | 0.9300 |
| N4—C14 | 1.324 (5) | C7—H7 | 0.9300 |
| N4—C17 | 1.343 (5) | C9—H9 | 0.9300 |
| N1—H1 | 0.78 (4) | C10—H10 | 0.9300 |
| N2—H2A | 0.8600 | C12—H12 | 0.9300 |
| C1—C2 | 1.425 (5) | C13—H13 | 0.9300 |
| C1—C6 | 1.406 (5) | C16—H16 | 0.9300 |
| C1—C7 | 1.413 (5) | C18—H18A | 0.9600 |
| C2—C3 | 1.410 (6) | C18—H18B | 0.9600 |
| C3—C4 | 1.372 (6) | C18—H18C | 0.9600 |
| C4—C5 | 1.390 (7) | C19—H19A | 0.9600 |
| C5—C6 | 1.360 (6) | C19—H19B | 0.9600 |
| C8—C9 | 1.369 (5) | C19—H19C | 0.9600 |
| O3—S1—O4 | 119.31 (15) | N3—C14—N4 | 128.6 (3) |
| O3—S1—N2 | 102.96 (16) | N2—C14—N3 | 114.1 (3) |
| O3—S1—C11 | 109.37 (16) | N3—C15—C19 | 116.5 (3) |
| O4—S1—N2 | 111.00 (17) | C16—C15—C19 | 122.0 (4) |
| O4—S1—C11 | 108.66 (17) | N3—C15—C16 | 121.5 (4) |
| N2—S1—C11 | 104.50 (15) | C15—C16—C17 | 118.7 (4) |
| C3—O2—H2 | 109.00 | N4—C17—C18 | 116.0 (3) |
| C7—N1—C8 | 124.4 (4) | C16—C17—C18 | 122.7 (3) |
| S1—N2—C14 | 126.0 (3) | N4—C17—C16 | 121.2 (3) |
| C14—N3—C15 | 114.7 (3) | C3—C4—H4 | 119.00 |
| C14—N4—C17 | 115.2 (3) | C5—C4—H4 | 119.00 |
| C7—N1—H1 | 110 (3) | C4—C5—H5 | 120.00 |
| C8—N1—H1 | 125 (3) | C6—C5—H5 | 120.00 |
| C14—N2—H2A | 117.00 | C1—C6—H6 | 120.00 |
| S1—N2—H2A | 117.00 | C5—C6—H6 | 120.00 |
| C2—C1—C7 | 119.6 (3) | N1—C7—H7 | 118.00 |
| C2—C1—C6 | 119.9 (4) | C1—C7—H7 | 118.00 |
| C6—C1—C7 | 120.4 (3) | C8—C9—H9 | 120.00 |
| C1—C2—C3 | 118.7 (3) | C10—C9—H9 | 120.00 |
| O1—C2—C1 | 122.0 (3) | C9—C10—H10 | 120.00 |
| O1—C2—C3 | 119.4 (3) | C11—C10—H10 | 120.00 |
| C2—C3—C4 | 119.2 (4) | C11—C12—H12 | 120.00 |
| O2—C3—C2 | 121.7 (3) | C13—C12—H12 | 120.00 |
| O2—C3—C4 | 119.1 (4) | C8—C13—H13 | 120.00 |
| C3—C4—C5 | 121.8 (4) | C12—C13—H13 | 120.00 |
| C4—C5—C6 | 120.5 (4) | C15—C16—H16 | 121.00 |
| C1—C6—C5 | 119.8 (4) | C17—C16—H16 | 121.00 |
| N1—C7—C1 | 123.4 (4) | C17—C18—H18A | 109.00 |
| N1—C8—C9 | 121.5 (3) | C17—C18—H18B | 109.00 |
| C9—C8—C13 | 120.7 (4) | C17—C18—H18C | 109.00 |
| N1—C8—C13 | 117.8 (3) | H18A—C18—H18B | 109.00 |
| C8—C9—C10 | 119.8 (3) | H18A—C18—H18C | 109.00 |
| C9—C10—C11 | 120.1 (3) | H18B—C18—H18C | 109.00 |
| S1—C11—C10 | 120.5 (3) | C15—C19—H19A | 109.00 |
| S1—C11—C12 | 119.1 (3) | C15—C19—H19B | 109.00 |
| C10—C11—C12 | 120.3 (3) | C15—C19—H19C | 109.00 |
| C11—C12—C13 | 119.4 (3) | H19A—C19—H19B | 109.00 |
| C8—C13—C12 | 119.8 (4) | H19A—C19—H19C | 109.00 |
| N2—C14—N4 | 117.3 (3) | H19B—C19—H19C | 109.00 |
| O3—S1—N2—C14 | −173.5 (3) | C2—C1—C6—C5 | −1.6 (6) |
| O4—S1—N2—C14 | 57.7 (3) | C7—C1—C6—C5 | 177.9 (4) |
| C11—S1—N2—C14 | −59.3 (3) | C2—C1—C7—N1 | 1.0 (6) |
| O3—S1—C11—C10 | −149.8 (3) | C6—C1—C7—N1 | −178.5 (4) |
| O3—S1—C11—C12 | 34.1 (3) | O1—C2—C3—O2 | 1.6 (6) |
| O4—S1—C11—C10 | −18.0 (3) | O1—C2—C3—C4 | −179.2 (4) |
| O4—S1—C11—C12 | 165.9 (3) | C1—C2—C3—O2 | −178.1 (4) |
| N2—S1—C11—C10 | 100.5 (3) | C1—C2—C3—C4 | 1.1 (6) |
| N2—S1—C11—C12 | −75.6 (3) | O2—C3—C4—C5 | 177.8 (4) |
| C8—N1—C7—C1 | 180.0 (4) | C2—C3—C4—C5 | −1.5 (7) |
| C7—N1—C8—C9 | 34.0 (6) | C3—C4—C5—C6 | 0.3 (7) |
| C7—N1—C8—C13 | −146.0 (4) | C4—C5—C6—C1 | 1.2 (7) |
| S1—N2—C14—N3 | 170.9 (3) | N1—C8—C9—C10 | −178.8 (4) |
| S1—N2—C14—N4 | −8.9 (5) | C13—C8—C9—C10 | 1.1 (6) |
| C15—N3—C14—N2 | 177.7 (3) | N1—C8—C13—C12 | 179.3 (4) |
| C15—N3—C14—N4 | −2.5 (6) | C9—C8—C13—C12 | −0.7 (6) |
| C14—N3—C15—C16 | 0.3 (5) | C8—C9—C10—C11 | −0.7 (6) |
| C14—N3—C15—C19 | 179.4 (3) | C9—C10—C11—S1 | −176.4 (3) |
| C17—N4—C14—N2 | −178.0 (3) | C9—C10—C11—C12 | −0.3 (5) |
| C17—N4—C14—N3 | 2.2 (6) | S1—C11—C12—C13 | 176.9 (3) |
| C14—N4—C17—C16 | 0.1 (5) | C10—C11—C12—C13 | 0.8 (5) |
| C14—N4—C17—C18 | −178.5 (3) | C11—C12—C13—C8 | −0.3 (6) |
| C6—C1—C2—O1 | −179.3 (4) | N3—C15—C16—C17 | 1.7 (6) |
| C6—C1—C2—C3 | 0.4 (6) | C19—C15—C16—C17 | −177.3 (4) |
| C7—C1—C2—O1 | 1.2 (6) | C15—C16—C17—N4 | −1.9 (6) |
| C7—C1—C2—C3 | −179.1 (4) | C15—C16—C17—C18 | 176.6 (4) |
| H··· | ||||
| N1—H1···O1 | 0.78 (4) | 1.88 (4) | 2.569 (5) | 148 (4) |
| O2—H2···O1 | 0.82 | 2.34 | 2.768 (5) | 113 |
| O2—H2···N3i | 0.82 | 2.16 | 2.862 (5) | 144 |
| N2—H2 | 0.86 | 1.94 | 2.790 (4) | 172 |
| C18—H18 | 0.96 | 2.52 | 3.469 (5) | 171 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N1—H1⋯O1 | 0.78 (4) | 1.88 (4) | 2.569 (5) | 148 (4) |
| O2—H2⋯O1 | 0.82 | 2.34 | 2.768 (5) | 113 |
| O2—H2⋯N3i | 0.82 | 2.16 | 2.862 (5) | 144 |
| N2—H2 | 0.86 | 1.94 | 2.790 (4) | 172 |
| C18—H18 | 0.96 | 2.52 | 3.469 (5) | 171 |
Symmetry codes: (i) ; (ii) ; (iii) .