Literature DB >> 22969579

2-[(E)-({4-[(4,6-Dimethyl-pyrimidin-2-yl)sulfamo-yl]phen-yl}iminio)meth-yl]-6-hy-droxy-phenolate.

M Nawaz Tahir, Abdul Haleem Khan, Mohammad S Iqbal, Hazoor Ahmad Shad, Muhammad Yaqub.   

Abstract

The title compound, C(19)H(18)N(4)O(4)S, exists as a zwitterion in the solid state, with nominal proton transfer from a phenol group to the imine N atom. The 2,3-dihy-droxy-benzaldehyde fragment is oriented at a dihedral angle of 35.51 (11)° to the adajacent aniline group and makes a dihedral angle of 76.99 (6)° with the 4,6-dimethyl-pyrimidin-2-amine group. Intra-molecular O-H⋯O and N-H⋯O hydrogen bonds close S(5) and S(6) rings, respectively; the same O atom accepts both bonds. In the crystal, polymeric chains along [001] are formed from mol-ecules joined end-to-end by N-H⋯O and O-H⋯N hydrogen bonds; these feature R(2) (3)(6) loops. The polymeric chains are linked by C-H⋯O inter-actions and there are π-π inter-actions between the pyrimidine rings with a centroid-centroid distance of 3.446 (2) Å.

Entities:  

Year:  2012        PMID: 22969579      PMCID: PMC3435708          DOI: 10.1107/S1600536812034757

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Chohan et al. (2008 ▶); Shad et al. (2009 ▶); Tahir et al. (2012 ▶). For graph-set notation, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C19H18N4O4S M = 398.43 Orthorhombic, a = 24.7506 (12) Å b = 12.1689 (6) Å c = 12.8408 (5) Å V = 3867.5 (3) Å3 Z = 8 Mo Kα radiation μ = 0.20 mm−1 T = 296 K 0.34 × 0.28 × 0.15 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.935, T max = 0.971 16627 measured reflections 3796 independent reflections 1778 reflections with I > 2σ(I) R int = 0.069

Refinement

R[F 2 > 2σ(F 2)] = 0.054 wR(F 2) = 0.151 S = 1.01 3796 reflections 259 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.21 e Å−3 Δρmin = −0.28 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812034757/hb6908sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812034757/hb6908Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812034757/hb6908Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H18N4O4SF(000) = 1664
Mr = 398.43Dx = 1.369 Mg m3
Orthorhombic, PbcnMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2n 2abCell parameters from 1778 reflections
a = 24.7506 (12) Åθ = 1.7–26.0°
b = 12.1689 (6) ŵ = 0.20 mm1
c = 12.8408 (5) ÅT = 296 K
V = 3867.5 (3) Å3Plate, dark red
Z = 80.34 × 0.28 × 0.15 mm
Bruker Kappa APEXII CCD diffractometer3796 independent reflections
Radiation source: fine-focus sealed tube1778 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.069
Detector resolution: 8.00 pixels mm-1θmax = 26.0°, θmin = 1.7°
ω scansh = −30→29
Absorption correction: multi-scan (SADABS; Bruker, 2005)k = −15→15
Tmin = 0.935, Tmax = 0.971l = −15→14
16627 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.054Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.151H atoms treated by a mixture of independent and constrained refinement
S = 1.01w = 1/[σ2(Fo2) + (0.0534P)2 + 1.0105P] where P = (Fo2 + 2Fc2)/3
3796 reflections(Δ/σ)max < 0.001
259 parametersΔρmax = 0.21 e Å3
0 restraintsΔρmin = −0.28 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.33210 (4)0.16234 (8)0.39452 (7)0.0639 (3)
O10.14274 (12)0.0303 (2)−0.1123 (2)0.0874 (11)
O20.07789 (15)−0.0466 (3)−0.2721 (3)0.1110 (16)
O30.30024 (11)0.2317 (2)0.46012 (18)0.0765 (10)
O40.36264 (12)0.0762 (2)0.43976 (18)0.0799 (10)
N10.19699 (14)−0.0123 (3)0.0534 (3)0.0683 (14)
N20.37120 (13)0.2493 (3)0.3342 (2)0.0719 (11)
N30.42863 (12)0.3128 (3)0.2071 (2)0.0638 (11)
N40.41470 (12)0.1191 (3)0.2320 (2)0.0650 (12)
C10.15104 (16)−0.1524 (3)−0.0429 (3)0.0673 (17)
C20.13077 (16)−0.0756 (3)−0.1170 (3)0.0683 (16)
C30.09721 (18)−0.1143 (3)−0.1978 (3)0.0783 (17)
C40.08434 (18)−0.2239 (4)−0.2017 (4)0.091 (2)
C50.10447 (18)−0.2985 (3)−0.1295 (4)0.0843 (19)
C60.13772 (17)−0.2643 (3)−0.0517 (3)0.0773 (17)
C70.18412 (16)−0.1152 (3)0.0396 (3)0.0700 (17)
C80.22986 (15)0.0266 (3)0.1351 (3)0.0567 (14)
C90.27177 (16)−0.0346 (3)0.1735 (3)0.0667 (16)
C100.30228 (15)0.0054 (3)0.2545 (3)0.0653 (14)
C110.29108 (14)0.1070 (3)0.2961 (2)0.0523 (12)
C120.24920 (16)0.1698 (3)0.2564 (3)0.0633 (14)
C130.21849 (16)0.1290 (3)0.1757 (3)0.0653 (14)
C140.40682 (15)0.2243 (3)0.2534 (3)0.0613 (16)
C150.46458 (16)0.2897 (3)0.1314 (3)0.0663 (16)
C160.47691 (16)0.1837 (3)0.1050 (3)0.0730 (16)
C170.45058 (16)0.0989 (3)0.1559 (3)0.0683 (16)
C180.45913 (17)−0.0204 (3)0.1284 (3)0.0923 (19)
C190.48948 (18)0.3859 (3)0.0768 (3)0.0920 (19)
H10.1840 (16)0.024 (3)0.010 (3)0.0821*
H20.087170.01670−0.259280.1666*
H2A0.369750.316720.353980.0861*
H40.06153−0.24894−0.254130.1089*
H50.09512−0.37230−0.134370.1011*
H60.15163−0.31479−0.004460.0928*
H70.19743−0.166780.086400.0841*
H90.27959−0.102920.144840.0801*
H100.33052−0.036330.281300.0782*
H120.241880.238890.283910.0759*
H130.190160.170360.148750.0779*
H160.502510.168930.053890.0876*
H18A0.43576−0.040110.071730.1383*
H18B0.45100−0.065370.187780.1383*
H18C0.49606−0.031590.108190.1383*
H19A0.463030.420010.032700.1379*
H19B0.519400.361330.035350.1379*
H19C0.501980.438150.127430.1379*
U11U22U33U12U13U23
S10.0759 (7)0.0645 (6)0.0512 (5)−0.0047 (6)0.0066 (5)−0.0030 (5)
O10.112 (2)0.0531 (16)0.097 (2)0.0023 (16)−0.0265 (17)−0.0057 (15)
O20.141 (3)0.080 (2)0.112 (3)0.012 (2)−0.051 (2)−0.016 (2)
O30.090 (2)0.0805 (18)0.0591 (15)−0.0076 (15)0.0199 (14)−0.0167 (14)
O40.099 (2)0.0790 (18)0.0618 (16)0.0104 (16)−0.0146 (15)0.0079 (14)
N10.083 (3)0.060 (2)0.062 (2)0.0034 (19)−0.0070 (19)0.0035 (18)
N20.081 (2)0.0598 (18)0.075 (2)−0.0124 (17)0.0241 (19)−0.0180 (17)
N30.066 (2)0.068 (2)0.0573 (19)−0.0040 (17)−0.0016 (16)0.0028 (16)
N40.065 (2)0.068 (2)0.062 (2)−0.0039 (17)0.0091 (17)−0.0125 (17)
C10.066 (3)0.062 (3)0.074 (3)−0.001 (2)0.005 (2)−0.007 (2)
C20.071 (3)0.057 (2)0.077 (3)−0.002 (2)−0.001 (2)−0.019 (2)
C30.079 (3)0.070 (3)0.086 (3)0.003 (2)−0.010 (3)−0.015 (3)
C40.090 (4)0.073 (3)0.109 (4)−0.009 (3)−0.010 (3)−0.029 (3)
C50.084 (3)0.059 (3)0.110 (4)−0.011 (2)0.009 (3)−0.017 (3)
C60.080 (3)0.059 (3)0.093 (3)−0.006 (2)0.016 (3)0.000 (2)
C70.071 (3)0.062 (3)0.077 (3)0.003 (2)0.009 (2)0.005 (2)
C80.068 (3)0.051 (2)0.051 (2)−0.003 (2)−0.0007 (19)0.0017 (19)
C90.076 (3)0.051 (2)0.073 (3)0.009 (2)−0.002 (2)−0.004 (2)
C100.072 (3)0.055 (2)0.069 (2)0.008 (2)−0.007 (2)−0.002 (2)
C110.061 (2)0.047 (2)0.049 (2)−0.0016 (18)0.0038 (17)0.0042 (17)
C120.086 (3)0.048 (2)0.056 (2)0.006 (2)0.013 (2)−0.002 (2)
C130.076 (3)0.060 (2)0.060 (2)0.015 (2)−0.001 (2)0.005 (2)
C140.061 (3)0.066 (3)0.057 (2)−0.008 (2)0.002 (2)−0.008 (2)
C150.061 (3)0.087 (3)0.051 (2)−0.006 (2)−0.004 (2)0.006 (2)
C160.071 (3)0.091 (3)0.057 (2)0.001 (2)0.009 (2)−0.004 (2)
C170.068 (3)0.081 (3)0.056 (2)0.002 (2)−0.002 (2)−0.004 (2)
C180.106 (4)0.088 (3)0.083 (3)0.011 (3)0.017 (3)−0.018 (3)
C190.095 (4)0.104 (3)0.077 (3)−0.013 (3)0.018 (2)0.023 (3)
S1—O31.430 (3)C8—C131.380 (5)
S1—O41.417 (3)C9—C101.374 (5)
S1—N21.630 (3)C10—C111.375 (5)
S1—C111.755 (3)C11—C121.385 (5)
O1—C21.324 (4)C12—C131.378 (5)
O2—C31.348 (5)C15—C161.368 (5)
O2—H20.8200C15—C191.497 (5)
N1—C71.304 (5)C16—C171.385 (5)
N1—C81.409 (5)C17—C181.509 (5)
N2—C141.395 (5)C4—H40.9300
N3—C151.347 (5)C5—H50.9300
N3—C141.343 (5)C6—H60.9300
N4—C141.324 (5)C7—H70.9300
N4—C171.343 (5)C9—H90.9300
N1—H10.78 (4)C10—H100.9300
N2—H2A0.8600C12—H120.9300
C1—C21.425 (5)C13—H130.9300
C1—C61.406 (5)C16—H160.9300
C1—C71.413 (5)C18—H18A0.9600
C2—C31.410 (6)C18—H18B0.9600
C3—C41.372 (6)C18—H18C0.9600
C4—C51.390 (7)C19—H19A0.9600
C5—C61.360 (6)C19—H19B0.9600
C8—C91.369 (5)C19—H19C0.9600
O3—S1—O4119.31 (15)N3—C14—N4128.6 (3)
O3—S1—N2102.96 (16)N2—C14—N3114.1 (3)
O3—S1—C11109.37 (16)N3—C15—C19116.5 (3)
O4—S1—N2111.00 (17)C16—C15—C19122.0 (4)
O4—S1—C11108.66 (17)N3—C15—C16121.5 (4)
N2—S1—C11104.50 (15)C15—C16—C17118.7 (4)
C3—O2—H2109.00N4—C17—C18116.0 (3)
C7—N1—C8124.4 (4)C16—C17—C18122.7 (3)
S1—N2—C14126.0 (3)N4—C17—C16121.2 (3)
C14—N3—C15114.7 (3)C3—C4—H4119.00
C14—N4—C17115.2 (3)C5—C4—H4119.00
C7—N1—H1110 (3)C4—C5—H5120.00
C8—N1—H1125 (3)C6—C5—H5120.00
C14—N2—H2A117.00C1—C6—H6120.00
S1—N2—H2A117.00C5—C6—H6120.00
C2—C1—C7119.6 (3)N1—C7—H7118.00
C2—C1—C6119.9 (4)C1—C7—H7118.00
C6—C1—C7120.4 (3)C8—C9—H9120.00
C1—C2—C3118.7 (3)C10—C9—H9120.00
O1—C2—C1122.0 (3)C9—C10—H10120.00
O1—C2—C3119.4 (3)C11—C10—H10120.00
C2—C3—C4119.2 (4)C11—C12—H12120.00
O2—C3—C2121.7 (3)C13—C12—H12120.00
O2—C3—C4119.1 (4)C8—C13—H13120.00
C3—C4—C5121.8 (4)C12—C13—H13120.00
C4—C5—C6120.5 (4)C15—C16—H16121.00
C1—C6—C5119.8 (4)C17—C16—H16121.00
N1—C7—C1123.4 (4)C17—C18—H18A109.00
N1—C8—C9121.5 (3)C17—C18—H18B109.00
C9—C8—C13120.7 (4)C17—C18—H18C109.00
N1—C8—C13117.8 (3)H18A—C18—H18B109.00
C8—C9—C10119.8 (3)H18A—C18—H18C109.00
C9—C10—C11120.1 (3)H18B—C18—H18C109.00
S1—C11—C10120.5 (3)C15—C19—H19A109.00
S1—C11—C12119.1 (3)C15—C19—H19B109.00
C10—C11—C12120.3 (3)C15—C19—H19C109.00
C11—C12—C13119.4 (3)H19A—C19—H19B109.00
C8—C13—C12119.8 (4)H19A—C19—H19C109.00
N2—C14—N4117.3 (3)H19B—C19—H19C109.00
O3—S1—N2—C14−173.5 (3)C2—C1—C6—C5−1.6 (6)
O4—S1—N2—C1457.7 (3)C7—C1—C6—C5177.9 (4)
C11—S1—N2—C14−59.3 (3)C2—C1—C7—N11.0 (6)
O3—S1—C11—C10−149.8 (3)C6—C1—C7—N1−178.5 (4)
O3—S1—C11—C1234.1 (3)O1—C2—C3—O21.6 (6)
O4—S1—C11—C10−18.0 (3)O1—C2—C3—C4−179.2 (4)
O4—S1—C11—C12165.9 (3)C1—C2—C3—O2−178.1 (4)
N2—S1—C11—C10100.5 (3)C1—C2—C3—C41.1 (6)
N2—S1—C11—C12−75.6 (3)O2—C3—C4—C5177.8 (4)
C8—N1—C7—C1180.0 (4)C2—C3—C4—C5−1.5 (7)
C7—N1—C8—C934.0 (6)C3—C4—C5—C60.3 (7)
C7—N1—C8—C13−146.0 (4)C4—C5—C6—C11.2 (7)
S1—N2—C14—N3170.9 (3)N1—C8—C9—C10−178.8 (4)
S1—N2—C14—N4−8.9 (5)C13—C8—C9—C101.1 (6)
C15—N3—C14—N2177.7 (3)N1—C8—C13—C12179.3 (4)
C15—N3—C14—N4−2.5 (6)C9—C8—C13—C12−0.7 (6)
C14—N3—C15—C160.3 (5)C8—C9—C10—C11−0.7 (6)
C14—N3—C15—C19179.4 (3)C9—C10—C11—S1−176.4 (3)
C17—N4—C14—N2−178.0 (3)C9—C10—C11—C12−0.3 (5)
C17—N4—C14—N32.2 (6)S1—C11—C12—C13176.9 (3)
C14—N4—C17—C160.1 (5)C10—C11—C12—C130.8 (5)
C14—N4—C17—C18−178.5 (3)C11—C12—C13—C8−0.3 (6)
C6—C1—C2—O1−179.3 (4)N3—C15—C16—C171.7 (6)
C6—C1—C2—C30.4 (6)C19—C15—C16—C17−177.3 (4)
C7—C1—C2—O11.2 (6)C15—C16—C17—N4−1.9 (6)
C7—C1—C2—C3−179.1 (4)C15—C16—C17—C18176.6 (4)
D—H···AD—HH···AD···AD—H···A
N1—H1···O10.78 (4)1.88 (4)2.569 (5)148 (4)
O2—H2···O10.822.342.768 (5)113
O2—H2···N3i0.822.162.862 (5)144
N2—H2A···O1ii0.861.942.790 (4)172
C18—H18A···O4iii0.962.523.469 (5)171
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1⋯O10.78 (4)1.88 (4)2.569 (5)148 (4)
O2—H2⋯O10.822.342.768 (5)113
O2—H2⋯N3i 0.822.162.862 (5)144
N2—H2A⋯O1ii 0.861.942.790 (4)172
C18—H18A⋯O4iii 0.962.523.469 (5)171

Symmetry codes: (i) ; (ii) ; (iii) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  4-(5-Chloro-2-hydroxy-benzyl-idene-amino)-N-(4,6-dimethyl-pyrimidin-2-yl)benzene-sulfonamide.

Authors:  Zahid H Chohan; M Nawaz Tahir; Hazoor A Shad; Islam Ullah Khan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-03-05

3.  4-{[(E)-2,3-Dihy-droxy-benzyl-idene]amino}-N-(5-methyl-1,2-oxazol-3-yl)benzene-sulfonamide.

Authors:  M Nawaz Tahir; Abdul Haleem Khan; Mohammad S Iqbal; Christy Munir; Tariq Aziz
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-06-16

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total

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