Literature DB >> 22969570

N-(1,5-Dimethyl-3-oxo-2-phenyl-2,3-dihydro-1H-pyrazol-4-yl)-2-[4-(methyl-sulfan-yl)phen-yl]acetamide.

Hoong-Kun Fun, Ching Kheng Quah, Prakash S Nayak, B Narayana, B K Sarojini.   

Abstract

In the title compound, C(20)H(21)N(3)O(2)S, the 2,3-dihydro-1H-pyrazole ring is nearly planar (r.m.s. deviation = 0.023 Å) and forms dihedral angles of 16.96 (6) and 38.93 (6)° with the benzene and phenyl rings, respectively. The dihedral angle between the benzene and phenyl rings is 55.54 (6)°. The mol-ecular conformation is consolidated by an intra-molecular C-H⋯O hydrogen bond, which forms an S(6) ring. In the crystal, inversion dimers linked by pairs of N-H⋯O(p) (p = pyrazole) hydrogen bonds generate R(2) (2)(10) loops. The dimers are linked by C-H⋯O hydrogen bonds into sheets lying parallel to (100).

Entities:  

Year:  2012        PMID: 22969570      PMCID: PMC3435699          DOI: 10.1107/S1600536812034605

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to the title compound and for related structures, see: Fun et al. (2011a ▶,b ▶, 2012a ▶,b ▶). For the stability of the temperature controller used in the the data collection, see: Cosier & Glazer (1986 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C20H21N3O2S M = 367.46 Monoclinic, a = 14.9176 (8) Å b = 6.6527 (4) Å c = 19.5792 (10) Å β = 110.689 (1)° V = 1817.78 (17) Å3 Z = 4 Mo Kα radiation μ = 0.20 mm−1 T = 100 K 0.37 × 0.18 × 0.07 mm

Data collection

Bruker SMART APEXII DUO CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.931, T max = 0.987 19714 measured reflections 5302 independent reflections 4231 reflections with I > 2σ(I) R int = 0.033

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.116 S = 1.03 5302 reflections 242 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.42 e Å−3 Δρmin = −0.52 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812034605/hb6925sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812034605/hb6925Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812034605/hb6925Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H21N3O2SF(000) = 776
Mr = 367.46Dx = 1.343 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 5722 reflections
a = 14.9176 (8) Åθ = 2.9–30.0°
b = 6.6527 (4) ŵ = 0.20 mm1
c = 19.5792 (10) ÅT = 100 K
β = 110.689 (1)°Plate, yellow
V = 1817.78 (17) Å30.37 × 0.18 × 0.07 mm
Z = 4
Bruker SMART APEXII DUO CCD diffractometer5302 independent reflections
Radiation source: fine-focus sealed tube4231 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.033
φ and ω scansθmax = 30.1°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −20→21
Tmin = 0.931, Tmax = 0.987k = −9→9
19714 measured reflectionsl = −27→27
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.042Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.116H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.058P)2 + 0.594P] where P = (Fo2 + 2Fc2)/3
5302 reflections(Δ/σ)max = 0.001
242 parametersΔρmax = 0.42 e Å3
0 restraintsΔρmin = −0.52 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.90518 (2)1.11552 (8)0.26045 (2)0.03908 (13)
O10.48783 (6)0.70169 (15)0.28728 (5)0.0201 (2)
O20.37745 (6)0.49368 (14)0.45147 (5)0.01838 (19)
N10.54078 (7)0.67806 (17)0.41084 (6)0.0162 (2)
N20.35044 (7)1.00817 (16)0.41536 (5)0.0153 (2)
N30.31713 (7)0.81906 (16)0.42879 (5)0.0155 (2)
C10.67740 (8)0.8798 (2)0.29532 (7)0.0182 (2)
H1A0.61350.92220.28660.022*
C20.73958 (9)1.0064 (2)0.27714 (7)0.0201 (3)
H2A0.71781.13440.25640.024*
C30.83366 (8)0.9474 (2)0.28906 (6)0.0210 (3)
C40.86425 (8)0.7580 (2)0.31933 (6)0.0215 (3)
H4A0.92780.71480.32710.026*
C50.80202 (8)0.6324 (2)0.33817 (7)0.0189 (3)
H5A0.82400.50500.35940.023*
C60.70736 (8)0.6908 (2)0.32626 (6)0.0162 (2)
C70.64106 (8)0.5462 (2)0.34610 (7)0.0184 (2)
H7A0.62510.43230.31130.022*
H7B0.67500.49140.39560.022*
C80.54900 (8)0.64688 (19)0.34457 (6)0.0155 (2)
C90.45856 (8)0.7725 (2)0.41579 (6)0.0153 (2)
C100.43573 (8)0.9695 (2)0.40415 (6)0.0154 (2)
C110.38429 (8)0.6706 (2)0.43345 (6)0.0154 (2)
C120.24277 (8)0.8087 (2)0.45811 (6)0.0158 (2)
C130.18356 (9)0.6400 (2)0.44282 (7)0.0200 (3)
H13A0.19340.53400.41370.024*
C140.10982 (10)0.6290 (2)0.47079 (8)0.0251 (3)
H14A0.06960.51380.46130.030*
C150.09484 (9)0.7850 (2)0.51241 (7)0.0261 (3)
H15A0.04390.77740.53080.031*
C160.15406 (9)0.9525 (2)0.52726 (7)0.0233 (3)
H16A0.14351.05930.55570.028*
C170.22911 (9)0.9648 (2)0.50060 (6)0.0194 (3)
H17A0.27041.07840.51140.023*
C181.02279 (10)1.0805 (3)0.32583 (8)0.0324 (3)
H18A1.06491.18770.32050.049*
H18B1.04780.94990.31770.049*
H18C1.02031.08460.37520.049*
C190.48791 (9)1.1329 (2)0.38237 (7)0.0186 (2)
H19A0.55651.10160.39980.028*
H19B0.47791.26010.40390.028*
H19C0.46381.14500.32910.028*
C200.27706 (9)1.1291 (2)0.36089 (7)0.0188 (2)
H20A0.30651.25110.35020.028*
H20B0.22701.16630.38010.028*
H20C0.24881.05060.31600.028*
H1N10.5810 (13)0.620 (3)0.4501 (10)0.031 (5)*
U11U22U33U12U13U23
S10.02042 (17)0.0570 (3)0.0355 (2)−0.00826 (17)0.00457 (14)0.0233 (2)
O10.0176 (4)0.0252 (5)0.0164 (4)0.0004 (4)0.0046 (3)−0.0015 (4)
O20.0222 (4)0.0140 (4)0.0196 (4)0.0002 (4)0.0083 (3)0.0024 (4)
N10.0167 (4)0.0162 (5)0.0159 (4)0.0036 (4)0.0061 (4)0.0030 (4)
N20.0169 (4)0.0120 (5)0.0180 (4)0.0002 (4)0.0074 (4)0.0023 (4)
N30.0175 (4)0.0124 (5)0.0193 (5)−0.0008 (4)0.0098 (4)0.0018 (4)
C10.0162 (5)0.0194 (6)0.0187 (5)0.0012 (5)0.0058 (4)−0.0004 (5)
C20.0193 (5)0.0208 (7)0.0190 (5)−0.0003 (5)0.0054 (4)0.0011 (5)
C30.0164 (5)0.0305 (8)0.0156 (5)−0.0043 (5)0.0049 (4)0.0005 (5)
C40.0148 (5)0.0324 (8)0.0169 (5)0.0016 (5)0.0051 (4)0.0004 (5)
C50.0181 (5)0.0220 (7)0.0163 (5)0.0031 (5)0.0056 (4)−0.0004 (5)
C60.0166 (5)0.0173 (6)0.0155 (5)−0.0002 (5)0.0067 (4)−0.0020 (5)
C70.0181 (5)0.0166 (6)0.0232 (6)0.0017 (5)0.0104 (4)0.0003 (5)
C80.0155 (5)0.0132 (6)0.0188 (5)−0.0020 (4)0.0071 (4)−0.0012 (5)
C90.0166 (5)0.0157 (6)0.0147 (5)0.0007 (4)0.0068 (4)0.0007 (5)
C100.0161 (5)0.0168 (6)0.0138 (5)−0.0003 (4)0.0058 (4)−0.0001 (5)
C110.0167 (5)0.0155 (6)0.0135 (5)0.0004 (4)0.0050 (4)−0.0002 (4)
C120.0153 (5)0.0188 (6)0.0140 (5)0.0006 (5)0.0060 (4)0.0021 (5)
C130.0210 (5)0.0186 (6)0.0218 (6)−0.0016 (5)0.0092 (4)−0.0007 (5)
C140.0227 (6)0.0248 (7)0.0309 (7)−0.0054 (5)0.0133 (5)0.0023 (6)
C150.0232 (6)0.0341 (8)0.0258 (6)−0.0004 (6)0.0147 (5)0.0036 (6)
C160.0245 (6)0.0299 (8)0.0180 (5)0.0018 (6)0.0108 (5)−0.0033 (5)
C170.0193 (5)0.0220 (7)0.0167 (5)−0.0014 (5)0.0060 (4)−0.0024 (5)
C180.0195 (6)0.0420 (10)0.0339 (7)−0.0062 (6)0.0071 (5)0.0014 (7)
C190.0197 (5)0.0159 (6)0.0227 (6)−0.0010 (5)0.0105 (4)0.0020 (5)
C200.0191 (5)0.0170 (6)0.0199 (5)0.0021 (5)0.0063 (4)0.0036 (5)
S1—C31.7679 (14)C7—H7B0.9900
S1—C181.7844 (14)C9—C101.3534 (18)
O1—C81.2251 (14)C9—C111.4413 (16)
O2—C111.2432 (15)C10—C191.4843 (17)
N1—C81.3617 (15)C12—C171.3898 (18)
N1—C91.4115 (15)C12—C131.3936 (18)
N1—H1N10.878 (19)C13—C141.3933 (17)
N2—C101.3893 (14)C13—H13A0.9500
N2—N31.4112 (14)C14—C151.386 (2)
N2—C201.4690 (15)C14—H14A0.9500
N3—C111.3867 (16)C15—C161.387 (2)
N3—C121.4194 (14)C15—H15A0.9500
C1—C21.3892 (18)C16—C171.3946 (17)
C1—C61.3985 (18)C16—H16A0.9500
C1—H1A0.9500C17—H17A0.9500
C2—C31.3952 (17)C18—H18A0.9800
C2—H2A0.9500C18—H18B0.9800
C3—C41.399 (2)C18—H18C0.9800
C4—C51.3919 (18)C19—H19A0.9800
C4—H4A0.9500C19—H19B0.9800
C5—C61.4024 (16)C19—H19C0.9800
C5—H5A0.9500C20—H20A0.9800
C6—C71.5252 (17)C20—H20B0.9800
C7—C81.5187 (16)C20—H20C0.9800
C7—H7A0.9900
C3—S1—C18103.92 (7)C9—C10—C19129.15 (11)
C8—N1—C9120.41 (10)N2—C10—C19120.82 (11)
C8—N1—H1N1120.2 (12)O2—C11—N3124.27 (11)
C9—N1—H1N1118.4 (12)O2—C11—C9131.34 (11)
C10—N2—N3105.49 (10)N3—C11—C9104.36 (10)
C10—N2—C20118.41 (10)C17—C12—C13120.95 (11)
N3—N2—C20113.73 (9)C17—C12—N3120.44 (11)
C11—N3—N2110.70 (9)C13—C12—N3118.60 (11)
C11—N3—C12126.05 (11)C14—C13—C12119.11 (13)
N2—N3—C12119.72 (10)C14—C13—H13A120.4
C2—C1—C6121.05 (11)C12—C13—H13A120.4
C2—C1—H1A119.5C15—C14—C13120.34 (13)
C6—C1—H1A119.5C15—C14—H14A119.8
C1—C2—C3120.65 (13)C13—C14—H14A119.8
C1—C2—H2A119.7C14—C15—C16120.13 (12)
C3—C2—H2A119.7C14—C15—H15A119.9
C2—C3—C4118.86 (12)C16—C15—H15A119.9
C2—C3—S1116.94 (11)C15—C16—C17120.30 (13)
C4—C3—S1124.14 (9)C15—C16—H16A119.8
C5—C4—C3120.31 (11)C17—C16—H16A119.8
C5—C4—H4A119.8C12—C17—C16119.15 (13)
C3—C4—H4A119.8C12—C17—H17A120.4
C4—C5—C6121.08 (13)C16—C17—H17A120.4
C4—C5—H5A119.5S1—C18—H18A109.5
C6—C5—H5A119.5S1—C18—H18B109.5
C1—C6—C5118.04 (11)H18A—C18—H18B109.5
C1—C6—C7122.72 (10)S1—C18—H18C109.5
C5—C6—C7119.23 (12)H18A—C18—H18C109.5
C8—C7—C6112.33 (11)H18B—C18—H18C109.5
C8—C7—H7A109.1C10—C19—H19A109.5
C6—C7—H7A109.1C10—C19—H19B109.5
C8—C7—H7B109.1H19A—C19—H19B109.5
C6—C7—H7B109.1C10—C19—H19C109.5
H7A—C7—H7B107.9H19A—C19—H19C109.5
O1—C8—N1122.58 (11)H19B—C19—H19C109.5
O1—C8—C7121.68 (11)N2—C20—H20A109.5
N1—C8—C7115.70 (10)N2—C20—H20B109.5
C10—C9—N1126.34 (11)H20A—C20—H20B109.5
C10—C9—C11109.09 (10)N2—C20—H20C109.5
N1—C9—C11124.57 (11)H20A—C20—H20C109.5
C9—C10—N2110.03 (11)H20B—C20—H20C109.5
C10—N2—N3—C116.12 (12)N1—C9—C10—C191.3 (2)
C20—N2—N3—C11137.50 (10)C11—C9—C10—C19−177.91 (11)
C10—N2—N3—C12166.16 (10)N3—N2—C10—C9−4.81 (12)
C20—N2—N3—C12−62.45 (13)C20—N2—C10—C9−133.47 (11)
C6—C1—C2—C30.30 (19)N3—N2—C10—C19175.01 (10)
C1—C2—C3—C40.31 (19)C20—N2—C10—C1946.35 (16)
C1—C2—C3—S1177.43 (10)N2—N3—C11—O2173.15 (11)
C18—S1—C3—C2146.76 (11)C12—N3—C11—O214.66 (19)
C18—S1—C3—C4−36.29 (13)N2—N3—C11—C9−4.94 (12)
C2—C3—C4—C5−0.98 (19)C12—N3—C11—C9−163.44 (11)
S1—C3—C4—C5−177.88 (10)C10—C9—C11—O2−176.02 (12)
C3—C4—C5—C61.06 (19)N1—C9—C11—O24.7 (2)
C2—C1—C6—C5−0.24 (18)C10—C9—C11—N31.88 (13)
C2—C1—C6—C7−179.19 (11)N1—C9—C11—N3−177.38 (10)
C4—C5—C6—C1−0.43 (18)C11—N3—C12—C17130.20 (13)
C4—C5—C6—C7178.55 (11)N2—N3—C12—C17−26.55 (16)
C1—C6—C7—C8−12.81 (16)C11—N3—C12—C13−50.36 (17)
C5—C6—C7—C8168.25 (11)N2—N3—C12—C13152.89 (11)
C9—N1—C8—O11.55 (19)C17—C12—C13—C14−0.03 (19)
C9—N1—C8—C7179.33 (11)N3—C12—C13—C14−179.46 (11)
C6—C7—C8—O169.15 (15)C12—C13—C14—C150.9 (2)
C6—C7—C8—N1−108.66 (12)C13—C14—C15—C16−0.8 (2)
C8—N1—C9—C10−72.32 (17)C14—C15—C16—C17−0.1 (2)
C8—N1—C9—C11106.81 (14)C13—C12—C17—C16−0.90 (18)
N1—C9—C10—N2−178.87 (10)N3—C12—C17—C16178.52 (11)
C11—C9—C10—N21.88 (13)C15—C16—C17—C120.99 (19)
D—H···AD—HH···AD···AD—H···A
N1—H1N1···O2i0.880 (19)1.956 (19)2.7816 (14)155.7 (19)
C1—H1A···O10.952.383.0185 (16)124
C1—H1A···O1ii0.952.513.2342 (16)133
C7—H7A···O1iii0.992.573.4960 (16)155
C19—H19B···O2iv0.982.553.4470 (17)152
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1N1⋯O2i 0.880 (19)1.956 (19)2.7816 (14)155.7 (19)
C1—H1A⋯O10.952.383.0185 (16)124
C1—H1A⋯O1ii 0.952.513.2342 (16)133
C7—H7A⋯O1iii 0.992.573.4960 (16)155
C19—H19B⋯O2iv 0.982.553.4470 (17)152

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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2.  N-(3,5-Dichloro-phen-yl)-2-(naphthalen-1-yl)acetamide.

Authors:  Hoong-Kun Fun; Ching Kheng Quah; B Narayana; Prakash S Nayak; B K Sarojini
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-10-12

3.  N-(4-Bromo-phen-yl)-2-(naphthalen-1-yl)acetamide.

Authors:  Hoong-Kun Fun; Ching Kheng Quah; B Narayana; Prakash S Nayak; B K Sarojini
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-10-12

4.  N-(2,6-Dichloro-phen-yl)-2-(naphthalen-1-yl)acetamide.

Authors:  Hoong-Kun Fun; Ching Kheng Quah; Prakash S Nayak; B Narayana; B K Sarojini
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-04-13

5.  N-(1,3-Thia-zol-2-yl)-2-(2,4,6-trimethyl-phen-yl)acetamide.

Authors:  Hoong-Kun Fun; Ching Kheng Quah; Prakash S Nayak; B Narayana; B K Sarojini
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-07-18

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
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  5 in total

1.  2-(2,4-Dichloro-phen-yl)-N-(1,5-dimethyl-3-oxo-2-phenyl-2,3-dihydro-1H-pyrazol-4-yl)acetamide.

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-12-08

2.  N-(1,5-Dimethyl-3-oxo-2-phenyl-2,3-di-hydro-1H-pyrazol-4-yl)-2-phenyl-acetamide.

Authors:  Manpreet Kaur; Jerry P Jasinski; Brian J Anderson; H S Yathirajan; B Narayana
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-11-06

3.  2-(3,4-Dichloro-phen-yl)-N-(1,5-dimethyl-3-oxo-2-phenyl-2,3-dihydro-1H-pyrazol-4-yl)acetamide.

Authors:  Aneeka Mahan; Ray J Butcher; Prakash S Nayak; B Narayana; H S Yathirajan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-02-20

4.  2-(2,6-Dichloro-phen-yl)-N-(1,5-dimethyl-3-oxo-2-phenyl-2,3-dihydro-1H-pyrazol-4-yl)acetamide.

Authors:  Ray J Butcher; Aneeka Mahan; P S Nayak; B Narayana; H S Yathirajan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-12-08

5.  N-(1,5-Dimethyl-3-oxo-2-phenyl-2,3-di-hydro-1H-pyrazol-4-yl)-2-(4-nitro-phen-yl)acetamide.

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