Literature DB >> 22969568

2-[(8-Meth-oxy-carbonyl-4b,8-dimethyl-4b,5,6,7,8,8a,9,10-octa-hydro-phenan-thren-3-yl)amino]-3,5-dinitro-benzoic acid ethyl acetate monosolvate.

Bihai Tong, Ye Zhang.   

Abstract

The title compound, C(25)H(27)N(3)O(8)·C(4)H(8)O(2), has a diterpene skeleton in which the fused cyclo-hexane rings exhibit chair and half-chair conformations. An intra-molecular C-H⋯O hydrogen bond occurs. In the crystal, N-H⋯O, O-H⋯O and C-H⋯O hydrogen bonds are observed.

Entities:  

Year:  2012        PMID: 22969568      PMCID: PMC3435697          DOI: 10.1107/S1600536812032278

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of cis-deisopropyl­dehydro­abietate derivatives, see: Fonseca et al. (2001 ▶); Baleizao et al. (2004 ▶); Feio et al. (1999 ▶). For a related structures, see: Wang et al. (2006 ▶); Hamodrakas et al. (1978 ▶). For uses of dehydro­abietic acid (DAA), see: Bhatnagar (1983 ▶, 1984 ▶). For the geometry of diterpenic compounds, see: Allen et al. (1991 ▶);

Experimental

Crystal data

C25H27N3O8·C4H8O2 M = 585.60 Monoclinic, a = 7.649 (4) Å b = 13.591 (8) Å c = 14.399 (8) Å β = 101.371 (7)° V = 1467.5 (15) Å3 Z = 2 Mo Kα radiation μ = 0.10 mm−1 T = 296 K 0.47 × 0.38 × 0.12 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2002 ▶) T min = 0.954, T max = 0.988 9128 measured reflections 5885 independent reflections 4688 reflections with I > 2σ(I) R int = 0.016

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.107 S = 1.03 5885 reflections 385 parameters 1 restraint H-atom parameters constrained Δρmax = 0.13 e Å−3 Δρmin = −0.17 e Å−3 Data collection: SMART (Bruker, 2002 ▶); cell refinement: SAINT (Bruker, 2002 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812032278/kp2429sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812032278/kp2429Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812032278/kp2429Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C25H27N3O8·C4H8O2F(000) = 620
Mr = 585.60Dx = 1.325 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 3055 reflections
a = 7.649 (4) Åθ = 2.8–24.0°
b = 13.591 (8) ŵ = 0.10 mm1
c = 14.399 (8) ÅT = 296 K
β = 101.371 (7)°Block, orange
V = 1467.5 (15) Å30.47 × 0.38 × 0.12 mm
Z = 2
Bruker SMART CCD area-detector diffractometer5885 independent reflections
Radiation source: fine-focus sealed tube4688 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.016
ω scansθmax = 27.5°, θmin = 2.8°
Absorption correction: multi-scan (SADABS; Bruker, 2002)h = −9→9
Tmin = 0.954, Tmax = 0.988k = −17→14
9128 measured reflectionsl = −16→18
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.041Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.107H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.058P)2 + 0.0376P] where P = (Fo2 + 2Fc2)/3
5885 reflections(Δ/σ)max = 0.024
385 parametersΔρmax = 0.13 e Å3
1 restraintΔρmin = −0.17 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.4541 (2)0.20663 (15)1.11523 (11)0.0506 (4)
H1S0.41650.23691.15990.061*
N21.1161 (3)0.01668 (16)1.21945 (16)0.0627 (5)
N30.6957 (2)0.1904 (2)0.98090 (13)0.0622 (6)
O10.1533 (2)−0.19460 (12)0.64103 (12)0.0619 (4)
O20.2245 (2)−0.05029 (12)0.58598 (11)0.0553 (4)
O31.1580 (3)−0.01462 (18)1.30023 (15)0.0869 (6)
O41.2085 (3)0.00787 (19)1.16010 (15)0.0920 (7)
O50.6401 (2)0.10646 (14)1.39061 (11)0.0631 (4)
H50.58290.12291.43060.095*
O60.4375 (2)0.19827 (14)1.29741 (10)0.0645 (5)
O70.6592 (3)0.27809 (18)0.97449 (14)0.0812 (6)
O80.7103 (3)0.13644 (19)0.91429 (12)0.0894 (7)
O1S0.3165 (2)0.24418 (17)0.61251 (13)0.0775 (5)
O2S0.4987 (2)0.16498 (16)0.53723 (12)0.0749 (6)
C10.8417 (3)0.08358 (16)1.25915 (15)0.0477 (5)
H10.88240.06331.32140.057*
C20.9446 (3)0.06669 (17)1.19241 (16)0.0493 (5)
C30.8917 (3)0.09838 (17)1.10043 (16)0.0513 (5)
H30.96320.08791.05610.062*
C40.7316 (3)0.14554 (17)1.07577 (13)0.0478 (5)
C50.6150 (3)0.16232 (16)1.13960 (13)0.0440 (5)
C60.6781 (3)0.13053 (16)1.23462 (13)0.0441 (4)
C70.5720 (3)0.14879 (17)1.30933 (14)0.0489 (5)
C80.3398 (3)0.20904 (16)1.02443 (13)0.0446 (5)
C90.2480 (3)0.29477 (18)0.99475 (16)0.0523 (5)
H90.26790.35171.03110.063*
C100.1267 (3)0.29411 (17)0.91050 (16)0.0529 (5)
H100.06140.35090.89170.063*
C110.0978 (2)0.21138 (16)0.85216 (14)0.0439 (5)
C120.1923 (2)0.12511 (15)0.88017 (13)0.0396 (4)
C130.3113 (3)0.12563 (16)0.96844 (13)0.0437 (4)
H130.37240.06820.98960.052*
C14−0.0350 (3)0.21756 (17)0.76050 (15)0.0514 (5)
H14A0.02060.24890.71320.062*
H14B−0.13450.25830.76950.062*
C15−0.1040 (3)0.11764 (17)0.72472 (15)0.0480 (5)
H15A−0.17680.12430.66180.058*
H15B−0.17850.09110.76600.058*
C160.0500 (2)0.04646 (15)0.72138 (13)0.0393 (4)
H160.12790.07870.68420.047*
C170.1646 (3)0.02907 (14)0.82312 (13)0.0402 (4)
C180.0684 (3)−0.04380 (18)0.87898 (15)0.0540 (5)
H18A0.1465−0.05890.93890.065*
H18B−0.0375−0.01240.89270.065*
C190.0150 (4)−0.13884 (19)0.82600 (18)0.0622 (6)
H19A−0.0472−0.18080.86330.075*
H19B0.1209−0.17330.81620.075*
C20−0.1057 (3)−0.11764 (19)0.73048 (18)0.0584 (6)
H20A−0.2146−0.08690.74090.070*
H20B−0.1377−0.17930.69760.070*
C21−0.0177 (3)−0.05074 (16)0.66828 (14)0.0444 (4)
C22−0.1505 (3)−0.0292 (2)0.57444 (17)0.0612 (6)
H22A−0.10350.02200.54050.092*
H22B−0.2626−0.00860.58830.092*
H22C−0.1677−0.08780.53640.092*
C230.1299 (3)−0.10728 (17)0.63367 (14)0.0460 (5)
C240.3485 (3)−0.01273 (18)0.81485 (15)0.0499 (5)
H24A0.40680.03220.77940.075*
H24B0.3330−0.07510.78290.075*
H24C0.4200−0.02130.87700.075*
C250.3532 (4)−0.1005 (2)0.5418 (2)0.0760 (8)
H25A0.4443−0.12890.58970.114*
H25B0.4062−0.05450.50500.114*
H25C0.2946−0.15170.50120.114*
C1S0.4227 (5)0.3569 (3)0.7347 (3)0.1153 (14)
H1S10.41380.41330.69390.173*
H1S20.51310.36830.79010.173*
H1S30.31030.34600.75310.173*
C2S0.4685 (4)0.2728 (3)0.6858 (2)0.1023 (12)
H2S10.50120.21900.73000.123*
H2S20.57010.28780.65720.123*
C3S0.3494 (3)0.19013 (19)0.54227 (16)0.0568 (6)
C4S0.1866 (4)0.1646 (2)0.47246 (19)0.0685 (7)
H4S10.19950.18590.41060.103*
H4S20.08550.19660.48940.103*
H4S30.16930.09460.47210.103*
U11U22U33U12U13U23
N10.0465 (9)0.0698 (13)0.0344 (8)0.0096 (9)0.0056 (7)−0.0083 (8)
N20.0529 (11)0.0655 (14)0.0658 (14)0.0085 (9)0.0023 (10)−0.0114 (10)
N30.0460 (10)0.0995 (19)0.0428 (10)−0.0062 (11)0.0133 (8)−0.0005 (11)
O10.0686 (10)0.0477 (10)0.0715 (11)0.0040 (8)0.0189 (9)−0.0004 (8)
O20.0591 (9)0.0528 (9)0.0593 (9)0.0054 (7)0.0249 (7)0.0035 (7)
O30.0812 (13)0.1000 (15)0.0742 (13)0.0356 (11)0.0025 (10)0.0020 (11)
O40.0618 (11)0.129 (2)0.0892 (14)0.0323 (11)0.0234 (11)−0.0025 (12)
O50.0734 (11)0.0769 (12)0.0417 (8)0.0163 (9)0.0178 (8)0.0080 (8)
O60.0606 (9)0.0897 (13)0.0448 (8)0.0209 (9)0.0144 (7)−0.0002 (8)
O70.0831 (13)0.0916 (17)0.0666 (12)−0.0033 (11)0.0091 (10)0.0213 (11)
O80.0761 (12)0.154 (2)0.0423 (9)0.0142 (13)0.0212 (8)−0.0121 (11)
O1S0.0567 (10)0.1045 (15)0.0693 (11)0.0140 (10)0.0071 (9)−0.0255 (10)
O2S0.0632 (10)0.1121 (17)0.0497 (9)0.0202 (10)0.0117 (8)−0.0045 (9)
C10.0501 (12)0.0453 (12)0.0436 (11)−0.0005 (9)−0.0007 (9)−0.0074 (9)
C20.0429 (11)0.0503 (13)0.0528 (13)0.0018 (9)0.0051 (9)−0.0129 (9)
C30.0452 (11)0.0621 (14)0.0476 (12)−0.0033 (10)0.0115 (9)−0.0154 (10)
C40.0440 (11)0.0609 (14)0.0374 (10)−0.0035 (9)0.0054 (8)−0.0080 (9)
C50.0428 (10)0.0505 (12)0.0376 (10)−0.0016 (9)0.0058 (8)−0.0083 (8)
C60.0459 (10)0.0475 (12)0.0377 (10)−0.0017 (9)0.0057 (8)−0.0073 (9)
C70.0529 (12)0.0546 (14)0.0384 (11)0.0010 (10)0.0070 (9)−0.0061 (9)
C80.0405 (10)0.0557 (13)0.0374 (10)0.0030 (9)0.0072 (8)−0.0016 (9)
C90.0539 (12)0.0534 (14)0.0484 (12)0.0042 (10)0.0075 (10)−0.0078 (10)
C100.0536 (12)0.0484 (13)0.0542 (13)0.0127 (10)0.0048 (10)0.0010 (10)
C110.0396 (10)0.0485 (12)0.0420 (11)0.0067 (9)0.0043 (8)0.0024 (9)
C120.0366 (9)0.0459 (11)0.0363 (9)0.0033 (8)0.0072 (7)0.0033 (8)
C130.0413 (10)0.0502 (12)0.0387 (10)0.0084 (9)0.0059 (8)0.0029 (9)
C140.0490 (12)0.0506 (13)0.0505 (12)0.0127 (10)−0.0005 (9)0.0036 (10)
C150.0405 (10)0.0548 (13)0.0454 (11)0.0089 (9)0.0007 (9)0.0001 (10)
C160.0345 (9)0.0438 (11)0.0392 (10)0.0012 (8)0.0060 (8)0.0031 (8)
C170.0411 (10)0.0419 (11)0.0364 (10)0.0053 (8)0.0048 (8)0.0016 (8)
C180.0690 (14)0.0514 (13)0.0444 (11)0.0034 (11)0.0177 (10)0.0085 (10)
C190.0843 (17)0.0474 (14)0.0618 (15)−0.0087 (12)0.0312 (13)0.0079 (11)
C200.0551 (13)0.0555 (15)0.0683 (16)−0.0136 (11)0.0211 (12)−0.0086 (11)
C210.0388 (10)0.0475 (12)0.0456 (11)−0.0003 (9)0.0055 (8)−0.0004 (9)
C220.0495 (13)0.0671 (16)0.0598 (14)0.0015 (11)−0.0069 (10)−0.0117 (12)
C230.0441 (11)0.0488 (13)0.0430 (11)−0.0010 (9)0.0033 (9)−0.0014 (9)
C240.0423 (11)0.0553 (13)0.0485 (12)0.0117 (9)0.0004 (9)−0.0027 (10)
C250.0725 (17)0.0785 (19)0.088 (2)0.0140 (14)0.0429 (16)0.0006 (14)
C1S0.100 (3)0.107 (3)0.142 (3)−0.026 (2)0.031 (2)−0.049 (3)
C2S0.077 (2)0.136 (3)0.083 (2)0.019 (2)−0.0077 (17)−0.041 (2)
C3S0.0628 (14)0.0618 (15)0.0457 (12)0.0060 (12)0.0103 (10)0.0077 (11)
C4S0.0693 (16)0.0697 (17)0.0609 (15)−0.0036 (12)−0.0010 (12)0.0105 (12)
N1—C51.353 (3)C14—H14B0.9700
N1—C81.423 (3)C15—C161.532 (3)
N1—H1S0.8600C15—H15A0.9700
N2—O41.217 (3)C15—H15B0.9700
N2—O31.221 (3)C16—C211.562 (3)
N2—C21.461 (3)C16—C171.570 (3)
N3—O71.223 (3)C16—H160.9800
N3—O81.230 (3)C17—C241.543 (3)
N3—C41.472 (3)C17—C181.550 (3)
O1—C231.202 (3)C18—C191.515 (4)
O2—C231.338 (3)C18—H18A0.9700
O2—C251.445 (3)C18—H18B0.9700
O5—C71.316 (3)C19—C201.525 (4)
O5—H50.8200C19—H19A0.9700
O6—C71.213 (3)C19—H19B0.9700
O1S—C3S1.314 (3)C20—C211.523 (3)
O1S—C2S1.461 (4)C20—H20A0.9700
O2S—C3S1.209 (3)C20—H20B0.9700
C1—C21.376 (3)C21—C231.528 (3)
C1—C61.387 (3)C21—C221.550 (3)
C1—H10.9300C22—H22A0.9600
C2—C31.376 (3)C22—H22B0.9600
C3—C41.365 (3)C22—H22C0.9600
C3—H30.9300C24—H24A0.9600
C4—C51.420 (3)C24—H24B0.9600
C5—C61.425 (3)C24—H24C0.9600
C6—C71.491 (3)C25—H25A0.9600
C8—C131.383 (3)C25—H25B0.9600
C8—C91.384 (3)C25—H25C0.9600
C9—C101.374 (3)C1S—C2S1.422 (5)
C9—H90.9300C1S—H1S10.9600
C10—C111.395 (3)C1S—H1S20.9600
C10—H100.9300C1S—H1S30.9600
C11—C121.394 (3)C2S—H2S10.9700
C11—C141.501 (3)C2S—H2S20.9700
C12—C131.410 (3)C3S—C4S1.479 (4)
C12—C171.534 (3)C4S—H4S10.9600
C13—H130.9300C4S—H4S20.9600
C14—C151.510 (3)C4S—H4S30.9600
C14—H14A0.9700
C5—N1—C8127.69 (16)C24—C17—C18109.75 (18)
C5—N1—H1S116.2C12—C17—C16111.36 (16)
C8—N1—H1S116.2C24—C17—C16109.47 (15)
O4—N2—O3123.7 (2)C18—C17—C16110.21 (17)
O4—N2—C2118.3 (2)C19—C18—C17113.07 (18)
O3—N2—C2118.0 (2)C19—C18—H18A109.0
O7—N3—O8125.2 (2)C17—C18—H18A109.0
O7—N3—C4118.2 (2)C19—C18—H18B109.0
O8—N3—C4116.6 (3)C17—C18—H18B109.0
C23—O2—C25115.90 (19)H18A—C18—H18B107.8
C7—O5—H5109.5C18—C19—C20110.4 (2)
C3S—O1S—C2S117.3 (2)C18—C19—H19A109.6
C2—C1—C6120.7 (2)C20—C19—H19A109.6
C2—C1—H1119.7C18—C19—H19B109.6
C6—C1—H1119.7C20—C19—H19B109.6
C1—C2—C3121.4 (2)H19A—C19—H19B108.1
C1—C2—N2119.9 (2)C19—C20—C21112.58 (18)
C3—C2—N2118.7 (2)C19—C20—H20A109.1
C4—C3—C2118.41 (19)C21—C20—H20A109.1
C4—C3—H3120.8C19—C20—H20B109.1
C2—C3—H3120.8C21—C20—H20B109.1
C3—C4—C5123.6 (2)H20A—C20—H20B107.8
C3—C4—N3115.45 (18)C20—C21—C23109.39 (18)
C5—C4—N3120.53 (19)C20—C21—C22109.59 (19)
N1—C5—C4124.00 (18)C23—C21—C22102.13 (17)
N1—C5—C6120.19 (17)C20—C21—C16111.04 (17)
C4—C5—C6115.80 (19)C23—C21—C16112.97 (16)
C1—C6—C5120.14 (18)C22—C21—C16111.35 (18)
C1—C6—C7119.03 (19)C21—C22—H22A109.5
C5—C6—C7120.83 (19)C21—C22—H22B109.5
O6—C7—O5122.96 (19)H22A—C22—H22B109.5
O6—C7—C6123.90 (19)C21—C22—H22C109.5
O5—C7—C6113.13 (19)H22A—C22—H22C109.5
C13—C8—C9119.86 (18)H22B—C22—H22C109.5
C13—C8—N1120.96 (18)O1—C23—O2122.0 (2)
C9—C8—N1119.06 (19)O1—C23—C21125.1 (2)
C10—C9—C8118.7 (2)O2—C23—C21112.64 (19)
C10—C9—H9120.6C17—C24—H24A109.5
C8—C9—H9120.6C17—C24—H24B109.5
C9—C10—C11122.41 (19)H24A—C24—H24B109.5
C9—C10—H10118.8C17—C24—H24C109.5
C11—C10—H10118.8H24A—C24—H24C109.5
C12—C11—C10119.49 (18)H24B—C24—H24C109.5
C12—C11—C14121.58 (18)O2—C25—H25A109.5
C10—C11—C14118.94 (18)O2—C25—H25B109.5
C11—C12—C13117.52 (18)H25A—C25—H25B109.5
C11—C12—C17123.47 (16)O2—C25—H25C109.5
C13—C12—C17118.90 (16)H25A—C25—H25C109.5
C8—C13—C12121.94 (18)H25B—C25—H25C109.5
C8—C13—H13119.0C2S—C1S—H1S1109.5
C12—C13—H13119.0C2S—C1S—H1S2109.5
C11—C14—C15112.35 (17)H1S1—C1S—H1S2109.5
C11—C14—H14A109.1C2S—C1S—H1S3109.5
C15—C14—H14A109.1H1S1—C1S—H1S3109.5
C11—C14—H14B109.1H1S2—C1S—H1S3109.5
C15—C14—H14B109.1C1S—C2S—O1S109.5 (3)
H14A—C14—H14B107.9C1S—C2S—H2S1109.8
C14—C15—C16111.05 (18)O1S—C2S—H2S1109.8
C14—C15—H15A109.4C1S—C2S—H2S2109.8
C16—C15—H15A109.4O1S—C2S—H2S2109.8
C14—C15—H15B109.4H2S1—C2S—H2S2108.2
C16—C15—H15B109.4O2S—C3S—O1S122.1 (2)
H15A—C15—H15B108.0O2S—C3S—C4S124.9 (2)
C15—C16—C21111.52 (17)O1S—C3S—C4S113.0 (2)
C15—C16—C17110.93 (16)C3S—C4S—H4S1109.5
C21—C16—C17113.55 (16)C3S—C4S—H4S2109.5
C15—C16—H16106.8H4S1—C4S—H4S2109.5
C21—C16—H16106.8C3S—C4S—H4S3109.5
C17—C16—H16106.8H4S1—C4S—H4S3109.5
C12—C17—C24108.83 (16)H4S2—C4S—H4S3109.5
C12—C17—C18107.17 (15)
D—H···AD—HH···AD···AD—H···A
N1—H1S···O60.862.022.654 (3)129
O5—H5···O2Si0.821.872.676 (3)168
C4S—H4S3···O20.962.543.332 (4)139
C15—H15B···O80.972.533.326 (4)140
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1S⋯O60.862.022.654 (3)129
O5—H5⋯O2S i 0.821.872.676 (3)168
C4S—H4S3⋯O20.962.543.332 (4)139
C15—H15B⋯O80.972.533.326 (4)140

Symmetry code: (i) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Antimicrobial activity of diterpene resin acid derivatives.

Authors:  S Savluchinske Feio; B Gigante; J C Roseiro; M J Marcelo-Curto
Journal:  J Microbiol Methods       Date:  1999-04       Impact factor: 2.363

  2 in total

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