Literature DB >> 22969535

4-Bromo-2-[(E)-(2-{2-[(2-{[(E)-5-bromo-2-hy-droxy-benzyl-idene]amino}-phen-yl)sulfan-yl]ethyl-sulfan-yl}phen-yl)imino-meth-yl]phenol.

Hadi Kargar, Reza Kia, Muhammad Nawaz Tahir.   

Abstract

The asymmetric unit of the title compound, C(28)H(22)Br(2)N(2)O(2)S(2), comprises half of a Schiff base ligand, the whole mol-ecule being generated by a crystallographic inversion center located at the mid-point of the C-C bond of the central methyl-ene segment. Intra-molecular O-H⋯N and O-H⋯S hydrogen bonds make S(6) and S(5) ring motifs, respectively. In the crystal, there are no significant inter-molecular inter-actions.

Entities:  

Year:  2012        PMID: 22969535      PMCID: PMC3435662          DOI: 10.1107/S1600536812034071

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For standard bond lengths, see: Allen et al. (1987 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For background to Schiff base ligands see, for example: Kargar et al. (2011 ▶); Kia et al. (2010 ▶).

Experimental

Crystal data

C28H22Br2N2O2S2 M = 642.42 Monoclinic, a = 13.9124 (18) Å b = 5.4112 (7) Å c = 17.409 (2) Å β = 92.444 (7)° V = 1309.4 (3) Å3 Z = 2 Mo Kα radiation μ = 3.28 mm−1 T = 296 K 0.35 × 0.14 × 0.12 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.393, T max = 0.694 10754 measured reflections 2879 independent reflections 1277 reflections with I > 2σ(I) R int = 0.093

Refinement

R[F 2 > 2σ(F 2)] = 0.052 wR(F 2) = 0.106 S = 0.93 2879 reflections 163 parameters H-atom parameters constrained Δρmax = 0.38 e Å−3 Δρmin = −0.55 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812034071/su2486sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812034071/su2486Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812034071/su2486Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C28H22Br2N2O2S2F(000) = 644
Mr = 642.42Dx = 1.629 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 2098 reflections
a = 13.9124 (18) Åθ = 2.5–28.8°
b = 5.4112 (7) ŵ = 3.28 mm1
c = 17.409 (2) ÅT = 296 K
β = 92.444 (7)°Needle, light-yellow
V = 1309.4 (3) Å30.35 × 0.14 × 0.12 mm
Z = 2
Bruker SMART APEXII CCD area-detector diffractometer2879 independent reflections
Radiation source: fine-focus sealed tube1277 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.093
φ and ω scansθmax = 27.1°, θmin = 1.5°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −17→17
Tmin = 0.393, Tmax = 0.694k = −6→4
10754 measured reflectionsl = −22→22
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.052Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.106H-atom parameters constrained
S = 0.93w = 1/[σ2(Fo2) + (0.0347P)2] where P = (Fo2 + 2Fc2)/3
2879 reflections(Δ/σ)max = 0.001
163 parametersΔρmax = 0.38 e Å3
0 restraintsΔρmin = −0.55 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br10.55873 (4)1.84843 (11)0.63714 (3)0.0707 (3)
S10.08346 (11)0.7463 (2)0.57293 (8)0.0622 (4)
O10.2265 (3)1.2258 (6)0.51696 (19)0.0684 (11)
H10.20921.13030.55660.103*
N10.2327 (3)0.9977 (8)0.6512 (2)0.0479 (10)
C10.2994 (4)1.3675 (9)0.5463 (3)0.0502 (13)
C20.3336 (4)1.5574 (10)0.5026 (3)0.0633 (16)
H20.30481.58890.45440.076*
C30.4094 (4)1.7013 (9)0.5286 (3)0.0577 (15)
H30.43221.82770.49810.069*
C40.4522 (3)1.6562 (9)0.6015 (3)0.0492 (13)
C50.4185 (3)1.4704 (9)0.6453 (3)0.0483 (13)
H50.44801.44040.69340.058*
C60.3408 (3)1.3230 (8)0.6206 (2)0.0439 (12)
C70.3043 (4)1.1325 (9)0.6696 (3)0.0510 (13)
H70.33521.10760.71740.061*
C80.1967 (3)0.8149 (9)0.7006 (3)0.0436 (12)
C90.2299 (4)0.7718 (10)0.7752 (3)0.0672 (16)
H90.27970.86710.79680.081*
C100.1892 (4)0.5876 (10)0.8175 (3)0.0692 (17)
H100.21090.56150.86810.083*
C110.1171 (4)0.4423 (10)0.7861 (3)0.0616 (15)
H110.09110.31570.81480.074*
C120.0836 (4)0.4857 (10)0.7114 (3)0.0595 (15)
H120.03380.38930.69030.071*
C130.1228 (3)0.6697 (9)0.6678 (3)0.0447 (12)
C140.0071 (4)0.4938 (9)0.5431 (2)0.0567 (14)
H14A0.03680.33790.55820.068*
H14B−0.05430.50630.56710.068*
U11U22U33U12U13U23
Br10.0767 (5)0.0794 (5)0.0547 (4)−0.0273 (3)−0.0120 (3)0.0093 (3)
S10.0652 (11)0.0659 (11)0.0537 (9)−0.0180 (7)−0.0170 (7)−0.0023 (7)
O10.059 (3)0.091 (3)0.053 (2)−0.020 (2)−0.0163 (19)0.0036 (18)
N10.042 (3)0.054 (3)0.047 (2)−0.011 (2)−0.006 (2)−0.007 (2)
C10.049 (3)0.059 (4)0.042 (3)0.000 (3)−0.008 (2)−0.008 (3)
C20.060 (4)0.085 (5)0.043 (3)0.002 (3)−0.014 (3)0.016 (3)
C30.060 (4)0.070 (4)0.042 (3)−0.008 (3)−0.008 (3)0.010 (3)
C40.048 (3)0.057 (4)0.042 (3)−0.009 (3)0.001 (2)−0.003 (3)
C50.046 (4)0.060 (4)0.038 (3)−0.007 (3)−0.009 (2)0.003 (3)
C60.042 (3)0.052 (4)0.037 (3)0.001 (3)−0.001 (2)0.003 (3)
C70.056 (4)0.057 (4)0.039 (3)−0.007 (3)−0.006 (3)0.003 (3)
C80.039 (3)0.047 (4)0.045 (3)−0.008 (3)0.001 (2)−0.001 (3)
C90.064 (4)0.084 (5)0.052 (4)−0.023 (3)−0.009 (3)0.007 (3)
C100.068 (5)0.083 (5)0.056 (4)−0.011 (3)−0.002 (3)0.013 (3)
C110.060 (4)0.061 (4)0.064 (4)−0.008 (3)0.004 (3)0.013 (3)
C120.048 (4)0.067 (4)0.062 (4)−0.014 (3)−0.007 (3)0.001 (3)
C130.036 (3)0.047 (3)0.051 (3)0.003 (3)−0.002 (2)0.000 (3)
C140.048 (3)0.060 (4)0.062 (3)−0.009 (3)−0.003 (3)−0.005 (3)
Br1—C41.894 (5)C6—C71.444 (6)
S1—C131.766 (5)C7—H70.9300
S1—C141.793 (5)C8—C91.379 (6)
O1—C11.354 (5)C8—C131.397 (6)
O1—H10.9026C9—C101.376 (6)
N1—C71.265 (5)C9—H90.9300
N1—C81.416 (5)C10—C111.369 (7)
C1—C21.377 (6)C10—H100.9300
C1—C61.413 (6)C11—C121.383 (6)
C2—C31.373 (6)C11—H110.9300
C2—H20.9300C12—C131.379 (6)
C3—C41.399 (6)C12—H120.9300
C3—H30.9300C14—C14i1.508 (8)
C4—C51.358 (6)C14—H14A0.9700
C5—C61.396 (6)C14—H14B0.9700
C5—H50.9300
C13—S1—C14104.3 (2)C9—C8—C13120.1 (5)
C1—O1—H1104.8C9—C8—N1125.2 (5)
C7—N1—C8123.0 (4)C13—C8—N1114.7 (4)
O1—C1—C2119.0 (4)C10—C9—C8119.8 (5)
O1—C1—C6121.3 (5)C10—C9—H9120.1
C2—C1—C6119.7 (5)C8—C9—H9120.1
C3—C2—C1121.3 (5)C11—C10—C9120.9 (5)
C3—C2—H2119.3C11—C10—H10119.5
C1—C2—H2119.3C9—C10—H10119.5
C2—C3—C4119.4 (5)C10—C11—C12119.3 (5)
C2—C3—H3120.3C10—C11—H11120.3
C4—C3—H3120.3C12—C11—H11120.3
C5—C4—C3119.7 (5)C13—C12—C11121.0 (5)
C5—C4—Br1120.4 (4)C13—C12—H12119.5
C3—C4—Br1119.9 (4)C11—C12—H12119.5
C4—C5—C6122.0 (4)C12—C13—C8118.8 (4)
C4—C5—H5119.0C12—C13—S1124.8 (4)
C6—C5—H5119.0C8—C13—S1116.3 (4)
C5—C6—C1117.7 (4)C14i—C14—S1107.8 (4)
C5—C6—C7120.8 (4)C14i—C14—H14A110.2
C1—C6—C7121.5 (4)S1—C14—H14A110.2
N1—C7—C6123.7 (5)C14i—C14—H14B110.2
N1—C7—H7118.1S1—C14—H14B110.2
C6—C7—H7118.1H14A—C14—H14B108.5
D—H···AD—HH···AD···AD—H···A
O1—H1···N10.901.812.641 (5)151
O1—H1···S10.902.743.436 (4)135
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O1—H1⋯N10.901.812.641 (5)151
O1—H1⋯S10.902.743.436 (4)135
  4 in total

1.  A short history of SHELX.

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3.  4,4'-Dimeth-oxy-2,2'-[2,2-dimethyl-propane-1,3-diylbis(nitrilo-methanylyl-idene)]diphenol.

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4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total

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